Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                            <---------ARR14(2)                                                                          --------->ARR14(2)                                                                       <---------------AGL15                                                                      <-----------------AGL3                                                                      ----------------->AGL2                                                                      <-----------------AGL2                                                                      <-----------------AGL1                                                                      ----------------->AGL1                                                                      ----------------->AG                                                                      <-----------------AG                                                                      ----------------->AGL3                                                                   ------>ZmHOX2a(2)                                                                  <---------HSFB2a(1)                                                                  --------->HSFB2a(1)                                                                  <------ZmHOX2a(2)                                                                  <---------HSFC1(2)                                                                  --------->HSFC1(2)                                                                 --------->ARR11(3)                                                                 <---------ARR11(3)               <---------YAB1                                    <---------ARR14(2)     <---------GLK1(1)                          ------>ZmHOX2a(1)--------->ARR14(2)           -------     --------->GLK1(1)                          ==========================HOX2a_HOX2a         <------    --------->ARR11(3)                 <---------YAB1         --------->LBD16                 <------    --------->ARR14(2)     ----------->HVH21    =========================HOX2a_HOX2a          -------    <---------ARR11(3)   <------MYB46(1) <----------DOF2      <---------TOE1(2)      <---------YAB1    <---------ARR14(2)   <------MYB83 <---------ARR11(3)     <---------LBD16        --------->ARR11(3)   <---------HSFB2a(1)  <---------DEAR3(1)     --------->TOE1(3) <---------ARR14(3) --------->ARR14(2)   --------->HSFB2a(1)  <---------MYB46(3)     --------->TOE2(3) --------->ARR14(3) <---------ARR11(3) ------HSFB2a(2)        <---------DREB2C(2)  <---------YAB1 <---------LBD16         <---------ARR14(2) ----->HSFB2a(2)--------->TOE2(3)     --------->ARR11(3)   <---------ANAC46       <xxxxxxxxxxxxxxxxxx ------LBD16<---------MYB52(1)     <---------GLK1(2)  <---------GLK1(2)--------------->AGL15  <------   tcggaagatttccagttatcttagagtcggtgatagagattatctttatccttagagaatttcgcgggatcttccatattcggcaatatccttggagatt  14370400                                                                           --------->HSFC1(2)      <-                                                                           <---------HSFC1(2)      <-                        ======================HOX2a_HOX2a                  --------->HSFB2a(1)    ---         --------->ARR14(2)                                                <---------HSFB2a(1)   <---         <---------ARR14(2)                                            --------->ANAC46     xxxxxxxxx     <---------YAB1  <---------LBD16                                   --------->ANAC58     ---------    --------->ARR11(3)  <------ZmHOX2a(1)                              --------->ANAC58    <---------    <---------ARR11(3)--------->LBD16  ================================HOX2a_HOX2a       --------->LBD16 -->ARR11(3)         --------->HSFB2a(2)                          ----------->HVH21    <---------LBD16 ---ARR11(3) --------->LBD16           ------>ZmHOX2a(2)         --------->TOE2(1)    --------->ZAT2 ---GLK1(2)<---------LBD16           --------->ARR11(3)          --------->TOE1(1)    <---------ZAT2 -->ARR14(2)<---------ANAC46         <---------ARR11(3)         <---------HSFB2a(2)  --------->ANAC46 xxxxxsmallRNA(se3)  <---------HSFB2a(2)                        ------>ZmHOX2a(1)    --------->ANAC58 ---ARR14(2)<---------LBD16   <---------ZAT6                    --------->HSFB2a(2)  --------->ANAC58   ttccaatatcatttccgggttttccaggaatagtgtttcgatcttacatcggttctaagtcttctcctcggacacgaagtttctcccaagccgggtcaag  14370500                      --------->At4g35610                      <---------At4g35610                      --------->ATERF1(1)                      <------NtERF2                     ------>NtERF2                     <---------ATERF1(1)                     <---------DEAR3(2)                     <---------ORA47(2)                     <---------RAP2.3(1)                    <---------DEAR3(1)                    <---------RAP2.3(2)                    <---------RAP2.3(3)                    --------->ATERF1(2)                                                 <---------HSFB2a(2)          <---------MYB46(3)    ------>ZmHOX2a(1)                                       --------->HSFB2a(2)    <---------LBD16 <---------ATERF1(2)                                    <---------ANAC58    ------>ZmHOX2a(1)<---------ERF1                           <---------PCF2       --------->ZAT2 -----MYB83       <---------ATERF1(1)                         --------->PCF5    <---------ANAC58 -----MYB46(1)   <---------SPL7 --------->HSFB2a(2)           --------->TCP16(1)<---------ANAC58 ------>MYB59 <-----------HVH21 <---------HSFB2a(2)          <---------TCP16(2)------>NtERF2 -----P  <--------P--------->ATERF1(1)               ----------->HVH21     <---------ANAC58 xxxxxxxxxxxxxx>smallRNA(se3)  <---------LBD16 --------->At4g35610    <---------ANAC58 <---------LBD16 >WRKY18(1) <---------AtMYB61 ----------->RAV1(2)    <---------ZAT6   <---------ANAC58<---------LBD16 --HVH21 --------->ALFIN1  <---------At4g35610 <---------At4g35610--------->LBD16  <---------ZAT2   ttggtcctcgggttgtggtcgggcggctcatctcctggatgtatggctgagccgagtgatagtggtcccgaggcgtttcgaggcctgcttcgggatggct  14370600                                       xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)                                     <---------ATERF1(1)                                  <------ZmHOX2a(1)                               <-----------RAV1(2)                            <------NtERF2<---------REM1(2)                            <---------ZAT2<---------ALFIN1                           ------>NtERF2 <---------ZAT14                           <---------ATERF1(1)                           <---------DEAR3(2)                          --------->RAP2.6(2)                           <---------ZAT2                          <---------RAP2.6(2)                           --------->ZAT2                          <---------ATERF1(2)                           <---------STY1(2)                          --------->ATERF1(2)              <---------ANAC58           <----------DOF2       ------>NtERF2      <---------DEAR3(1)               <---------ANAC58<---------LBD16      <----   ----------->HVH21     --------->RAP2.6(3)  --------->At5g28300       --------->STY1(2)     -------   ctgaaatgacgcccgaaccatttcaaggccggctcaggacgactccacggtgatgtctgaggcgtttcaaggctagctcgggatggctctttgaaatgat  14370700                           <------MYB83                           <------MYB46(1)                          xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)                          <---------AtMYB61                          --------->ALFIN1                         <--------P                     <---------LBD16                  --------->ZAT2                  <---------ZAT2                                                     --------->At4g35610                  --------->ATERF1(1)                                                <------NtERF2                  <------NtERF2 <----------DOF2                                     <---------DEAR3(2)                 ------>NtERF2  ------>ZmHOX2a(1)                                  <---------DEAR3(1)                 <---------RAP2.6(3)                                               --------->ETT(1)                 <---------DEAR3(2)                                               <---------ORA47(1)                 <---------ATERF1(1)                                              --------->RAP2.6(3)                --------->RAP2.6(2)                                               *TSS            <--                <---------DEAR3(1)                    <---------MYB55(2)         <-----------HVH21<--                --------->ATERF1(2)                   <---------MYB46(2)     ------>ZmHOX2a(1)    ---                <---------RAP2.6(2)                   <---------MYB111(2)<---------ARR14(2)       <--               --------->ATERF1(1)                    <---------MYB52(2)--------->GLK1(1)     <------ --------->LBD16<---------ATERF1(2)    --------->ICU4 --------->MYB46(3)<---------GLK1(1)     <------ -----GLK1(1)  --------->RAP2.6(3)     <---------ATHB12------->GAMYBxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3) -->YAB1      ------>NtERF2<---------MYB46(3)         <---------MYB111(1)--------->ARR14(2)   <------   acccgaggtgttttgaggccggctcggggtggtcctttgaaatgatgcccgagccaactaacatggccttaggcatttcctctggtcggctcgattactt  14370800       <---------ETT(1)   <---------GLK1(1)   --------->GLK1(1)                                                   --------->At4g35610 -------ANAC58                                                         <-------GAMYB -------ANAC46                                                         <---------At4g35610 -------->GT1                                                     <-------MYC3 -------ANAC58                                                    ------->MYC3     --------->DAG2 ---ANAC58                                                        ------->MYC2    ---------->DOF2 ---ANAC46                                     <------ZmHOX2a(1)  <-------MYC2  <xxxxxxxxxxxxxxxxsmallRNA(i) ---ANAC58          --------->TOE2(3)      ---------->DOF2--------->ANAC46    >>>>>>>>>TBF1   gggtgaaatccgaccccaataaccttgttaacaaaaacatcgacacaaaggacatgctcgacgaagcatatgcagttgaagaagaaaagttgcccttgta  14370900             -------->ATHB1             --------->ATHB51                                     <---------ARR11(3)             --------->AHL20(2)                                   --------->ARR11(3)     <---------YAB1             <---------AHL20(2)                                --------->DAG2         xxxxxxxxxxxxxxx             <--------HAHB4                                --------->AHL20(2)       --------->AtMYB61            --------->ICU4                               --------->YAB1             <---------ICU4            <---------ATHB12                           --------->AHL20(2)          xxxxxxxxxxxxxxxxxx            <---------ATHB51     ------>ZmHOX2a(2)     <---------AHL20(2)  --------->At4g35610          --------->WOX13(1) <---------YAB1     <-------TEIL  ---------->DOF2   --------->ZAT18   tgcgaatttagtcaattatttagtaagtggtatgatcccaagagtttggatgcatataaaaataaaaagttcttatgagatgtccaccattactattggg  14371000                                                                                                 ----                                                                                                -----                                        <------ZmHOX2a(1)                        xxxxxxxxxxxxxxxxxxxx                              ----------->GT1                                   --------->HSFB2a(1)                            <---------ANAC46                                    <---------HSFB2a(1)    <----------DOF2      ----------->HVH21  --------->ALFIN1           --------->ARR14(2)       <xxxx ------->TEIL   ---------->DOF2      <---------LBD16----------->HVH21  <---------ARR14(2)    <xxxxxxx xxxxxxxx>smallRNA(fl3)  --------->ALFIN1 xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)xxxxxxxxxxxxxxxxxxxxxx xxx>smallRNA(i2)--------->DAG2      <-----------RAV1(2) <------ZmHOX2a(1) <---------HSFB2a(2)<------   atgagccttttttgtataaaaagggaagtgatgggttattcaggaggtgtgtctctgaaggagaagttcaagggatactggaacattgccatggctccac  14371100                                                                    --------->ICU4                                                                <------NtERF2                                                               --------->ANAC58                                                               --------->ANAC58                                                              <---------LBD16                                                             --------->PCF5  --------->ARR14(2)                                                            --------->PCF2   <---------ARR14(2)                                                            ----------->TCP11(1)                                                            <------NtERF2    <---------ARR11(3)                                                            --------->ATERF1(1)        <---------GLK1(1)                                                            <---------PCF5   <---------GLK1(2)  <------ZmHOX2a(1)                                    <---------AtMYB61    xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3) ----->AtMYB61                                         <-----------RAV1(1)<---------TOE2(3) ---->ANAC46   <---------ALFIN1                      --------->MYB52(2)  ---------->DOF2 xx>smallRNA(fl3)          --------->DEAR3(1)  <xxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)     --------->GLK1(1) xxxxxxxxxxxxsmallRNA(i)   --------->RAP2.6(2)<xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)  <------ZmHOX2a(1) xxxxxxxxxxxxxxxxsmallRNA(le3)              <---------ATERF1(2)--------->ANAC46    <xxxxxxxxxxxxxxxxxsmallRNA(si3) x>smallRNA(se3)------>NtERF2      --------->DAG2<------MYB83<---------ANAC46--------->ARR11(3) ---ALFIN1     --------->DEAR3(1) ---------->DOF2<------MYB46(1)--------->LBD16   <---------LBD16   ctaaggagggcatttcgccaccttcaagaccgcccaaaaagtattgcaggcaggtttgtggtggcccgcaatgtttaaagatactcaggaattcatagcg  14371200                                            --------->At4g35610                                            <---------At4g35610                                <---------HSFC1(1)                                                <--                                --------->HSFB2a(2)                   --------->ALFIN1  <---------ANAC46                                <---------HSFB2a(2)                <---------AtMYB61   --------->ALFIN1             ---------->DOF2 <---------ARR14(2)                <---------ANAC58      --------->ALFIN1         --------->ANAC46    --------->ARR11(3)                <---------ANAC58    <---------ANAC46         --------->AtLEC2   <---------CCA1(2)    ----------->RAV1(1)<---------ANAC46 <---------ANAC46   aaatgcaatccatgccaaagagtcggaaacatatctagaaggaatgagatgccacaaaatcccatgcttgaggtggaagtttttgatgtgtggggaagtt  14371300  Previous    Next  AGI:  At1g38240.1    Description:  transposable element gene. gypsy-like retrotransposon family, has a 1.1e-20 P-value blast match to GB:BAA84458 GAG-POL precursor (gypsy_Ty3-element) (Oryza sativa)gi|5902445|dbj|BAA84458.1| GAG-POL precursor (Oryza sativa (japonica cultivar-group)) (RIRE2) (Gypsy_Ty3-family) Range:  from: 14370782    to: 14372071    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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