Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                    <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)                 <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)            <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)          --------->ZAT18           <------ZmHOX2a(1)          <---------ZAT14       ------>ZmHOX2a(1)          <xxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)         --------->AtMYB61     --------->TOE2(3)                     --------->ARR14(2)  ------>MYB83         <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)                     <---------ICU4         ------>MYB46(1)       <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)              <---------ANAC58             --------->DEAR3(1)      xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)     xxxxxxxxxxxxxxxxxxxxxx>smallRNA(s2)   <---------At4g35610    <------ZmHOX2a(1)      <---------ALFIN1  <-----------GT1     <---------YAB1       --------->At4g35610    xxxxxxxxxxxxxxxxxxxxx>smallRNA(le3) ----------->GT1   <---------ANAC58          <-----------GT1  <---------TOE2(3)       <xxxxxxxxxxxxxxxxsmallRNA(s)    <---------ANAC46 <----------DOF2          <   gattaaggagaccacactattcgattaccccatccttaggaatagtttatccattcgattgcctgttatcatttctgctttgttattcacctccctgcta  14236600                                                                          xxxxxxxxxxxxxxxx>smallRNA(s)                                                                          xxxxxxxxxxxxxxxx>smallRNA(i)                                                                        <---------ANAC58                                                              ------->GAMYB                                                             <---------MYB55(2)                                                             <---------MYB52(2)                                                             --------->MYB46(3)                                                            --------->ANAC58                                                            --------->ANAC58                                                            ------>MYB46(1)                                                            -------->P  <---------ANAC58                                                            ------>MYB83<---------AtLEC2                                                          <xxxxxxxxxxxxxxxxsmallRNA(i)                                                          --------->AtMYB61                                                          <---------MYB111(1)                                                         --------->DEAR3(2)                                                         --------->MYB46(3)  <---------ANAC58       <                   <XXXXXXXXXXXXXXXXXXXXMIR1886.1 <-------GAMYB   <----------DOF2         <----------DOF2            <---------MYB52(1)                <------ZmHOX2a(1) ------>MYB83 <---------ANAC58     ---           <----------DOF2                 xxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)     <xxxxxxxxxxxxxxxx ---------YAB1    <-------TEIL <-----------HVH21 <---------ZAT6 ------>MYB46(1) <---------WRKY18(1)xx   ttgtcatttcttcctttagtttcatttcatttctgtcattgcatactaggactgttagaaccaaccaactttctgcttggcttgacttagagctttctga  14236700                          <---------ARR14(2)                        --------->LBD16                       <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)                       <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)                      <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)                      <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)                xxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)               <---------AtLEC2 <---------WOX13(1)               <---------ZAT6        <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)                <---------ARR11(3)        <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(i2)                 --------->ARR11(3)                  <xxx       <---------At4g35610--------->ARR14(2)          <----------ID1                             xxxx <-----------ARR10<xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)------->GAMYB<----------DOF2             <xxxx <---------ARR11(3)   <---------LBD16    ------>ZmHOX2a(1) --------->ANAC58        ----------->GT1 --------->ARR11(3)  --------->MYB52(1) --------->TOE2(3)  --------->ANAC58   --------->ATHB12------>ZmHOX2a(1) ---------CCA1(2)<xxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)   -------- ------>YAB1 <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3) xxxxxxxxxxxxxxxxxxxx>smallRNA(se3)       xxxxxxxxxx xxxxsmallRNA(le3)<---------ALFIN1     <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3) --------->AHL20(2) <xxxx xxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)  <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)  <---------AHL20(2)xxxxxx   tcatatctcatctgtttgcatcacaccggattggattgacatcctaaaatactacaacgacaagatagtgttttagggattaattgagtaaaaatcctac  14236800                       <---------ANAC58                       <---------ANAC46                       <------MYB46(1)                       <------MYB83                      --------->MYB111(2)                      <---------AtMYB61                    <---------MYB52(1)                   <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)                 xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(i2)             <---------MYB52(1)            <-------GAMYB           --------->DEAR3(1)          --------->ATERF1(1)          --------->RAP2.3(1)         ------>NtERF2--------->MYB46(2)         <---------RAP2.3(1)        <---------DEAR3(1)                                --------->TOE1(3) <xxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)                       --------->TOE2(3) <xxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)            --------->ATHB12 xxxxxxxxxxxxxxxxxxxxsmallRNA(i2)              <------ZmHOX2a(2) xxxxxxxxxxxxxxxxxxx>smallRNA(i2)              <---------YAB1 xxxxxxxxxxxxxxxxxxxsmallRNA(i2)               --------->ICU4          <-------TEIL ->TOE1(2)<------NtERF2<---------ANAC58       --------->ARR11(3)--------->ARR11(3)             <----- xxxxxxxxxxxxx>smallRNA(i2)                   <---------ARR11(3)<---------ARR11(3)             <----- xxxxxxxxxxxxxxxxxxxsmallRNA(se3)  <-----------------AGL3----------->GT1                    xxxxxxxxx xxxxxxxxxxxxx>smallRNA(se3)<xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)<------ZmHOX2a(2)         xxxxxxxxxx   tatcaatttggcgccgttgccagtttggtgtttgtttgctatatttgagatcattagaaacgttaagatcaagttcgtttttgttactcaagttactaac  14236900                                                  --------->ANAC58                                     <---------HSFC1(2)                                     --------->HSFC1(2)                                     <---------HSFB2a(1)                                     --------->HSFB2a(1)<----------DOF2                         <---------At4g35610   --------->LBD16                               <-------                        <---------------AtSPL8 <---------SPL7                                <-------               xxxxxxxxxxxxxxxx>smallRNA(s)  <---------LBD16                                 <-------     <----------DOF2   <-----------RAV1(2)<----------DOF2                      <---------At4g35610    <---------DAG2  xxxxxxxxxxxxxxxx>smallRNA(i)  --------->ANAC58             --------->At4g35610  < ----YAB1      <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3) ------->TEIL              --------->LBD16    *TSS ----TOE2(3)  <----------DOF2   --------->AtLEC2 --------->SPL7               <---------ALFIN1 ------ xxxxxxxxxxxxx>smallRNA(i2)   <---------ANAC58--------->HSFB2a(2)   <-------GAMYB            <------- xxxxxxxxxxxxx>smallRNA(si3)  <---------ANAC58<---------HSFB2a(2)  <---------MYB46(3)   <-----------RAV1(1)   attgtgccttttctgtctttgtgtttcaggtaccttgcaaccttctttccggacgcatctttgattcgtctgttatagccccgctgctatctgttgcatg  14237000                                                         --------->ANAC46                                                         --------->ANAC58                                                xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)                                            --------->WRKY12                                      <--                                            --------->ETT(2)                                      <--                                            --------->DEAR3(1)                                   ----                  <---------ICU4            --------->WRKY38(1)                                ------     <-----------HVH21                      <---------ETT(2)     --------->MYB52(1)            ------ --AtLEC2         --------->YAB1       <---------DOF5.7(2)   ------>NtERF2                   <------- --ANAC46        <---------ATHB12      xxxxxxxxxxxxxxxx>smallRNA(i)                          <------- --ANAC58      --------->GLK1(1)     --------->DOF5.7(2) --------->ANAC58                   <-------- -------TEIL   <---------GLK1(1)    --------->TOE2(3)  <---------ANAC58           --------->DEAR3(2) --->AtLEC2--------->ANAC58         --------->YAB1     <---------ANAC58           --------->MYB46(3) --ANAC58  --------->ANAC58 ------>ZmHOX2a(1)  xxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3) ----------->RAV1(1)   catacatggtcacaaggaaatcataacctcctattcaacgataacgtcgaccgtattgctcgccaactaagagaacagacagaaaccgacacaatgggtg  14237100                              xxxxxxxxxxxxxxxxxxxx>smallRNA(le3)                           ------>MYB46(1)                           ------>MYB83                          ----------->RAV1(1)                         xxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)                         xxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)                        --------->MYB46(3)                       ------>MYB46(1)                       -------->P                       ------>MYB83<---------At4g35610  --------->TOE2(3)                      --------->MYB55(1)                ------->GAMYB        <xxxxxxxxxxxxxxxxsmallRNA(i)<---------ANAC58  <xxxxxxxxxxxxxxxxxxxxsmallRNA(s2)  <xxxxxxxxxxxxxxxxsmallRNA(s)xxxxxxxxxxxxxxxxxxxxx>smallRNA(le3) <-----------TGA1 -------ANAC46       <---------MYB111(1)           <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(s2) -------bZIP60(2)    <---------MYB46(2)    <---------ANAC58   ------->GAMYB ------->STF1        <---------MYB59<---------ANAC58--------->MYB46(3)                     <---------ZAT14 ----->TGA1          --------->AtMYB61     <---------ANAC58  --------->MYB46(3)            --------->ZAT14 ----->HVH21        xxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)--------->AtMYB61            <xxxxxxxxxxxxxxx --ANAC58           --------->MYB46(3)<---------At4g35610 --------->MYB46(3)     <---------ALFIN1   - --ANAC58          -------->Pxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)   <-----------HVH21 --------->AtMYB61 -MYB46(3)        <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)--------->MYB46(3) <xxxxxxxxxxxxxxxxxxxxsmallRNA(i2)   acgttgtagatgagcaagagcaacctaccaacattggtgctggtgacttccctcacaaccacaaccagcgtcatggaattgttccacctccagtacagaa  14237200                                                                                     <---------ICU4                                                                            <---------MYB52(1)                                                                        <------ZmHOX2a(2)                                                                       <---------ARR14(2)                                                                       --------->GLK1(2)                                                                       --------->ARR14(2)                                          xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3) <---------ARR11(3)                                          xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3) --------->ARR11(3)                                       --------->LBD16                <------ZmHOX2a(1)                                      <---------ANAC46        <xxxxxxxxxxxxxxxxsmallRNA(i)           <------ZmHOX2a(2)       <-----------HVH21     <---------ANAC58  <-----------HVH21 <-------    <----------DOF2              <---------MYB46(3) <---------AtLEC2  ==================HOX2a_HOX2a xsmallRNA(i) ---------->DOF2   <---------ATHB12   <-------TEIL  <---------ATHB12<------ZmHOX2a(2)  - -------->MYB46(3)     <---------YAB1<-----------RAV1(2) <---------ANAC58------>ZmHOX2a(2)   --------   caacaactttgagatcaaaagcggtctcattgcaatggttcaggggaacaagtttcatggcctgccaatggaggatccgttagatcatcttgacgaattc  14237300                                                             <-----------GT1                                                        <---------ANAC58                   <---------                                                        <---------ANAC58                   ==========                                                 <---------TOE1(3)                       ----------->RAV1(2)      <-----------RAV1(1)                 ----------->GT1<---------TOE1(2)           <xxxxxxxxxxxxxxx --ARR14(2)               xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)                   --------->DAG2 -------->DAG2            xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(s2)                   ---------->DOF2  --- ->ARR14(2)               xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)          <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)   gaaaggctctgtggccttactaaaatcaatggagttagtgaagatggttttaagcttcgcttgtttccattttcacttggagataaagcccatctgtggg  14237400                            --------->TOE1(2)                         <xxxxxxxxxxxxxxxxsmallRNA(s)                        --------->ANAC58                        --------->ANAC58                      --------->YAB1                      <---------ICU4                     xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)                     xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)            --------->LBD16----------->RAV1(2)                                               --------           <---------LBD16 --------->ZAT2                                                   ---------       -------->P xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)                                     <--------   --------->ANAC58  <---------ATHB12               <---------ANAC58           <---------ARR14(2)   --------->ANAC46--------->WOX13(1)               <---------ANAC58           --------->ARR14(2)   --------->ANAC58xxxxxxxxxxxxxxxx>smallRNA(i)  <----------DOF2               <xxxxxxxxxxxxxxxxsmallRNA(s) --RAV1(1) <-----------RAV1(2)             ---------->DOF2                   --------->LBD16--------- ======================RAV<xxxxxxxxxxxxxxxxsmallRNA(i)                      <---------HSFB2a(2) xsmallRNA(i)    <------ZmHOX2a(2)  --------->RAP2.6(3)                     --------->HSFB2a(2) ------->DOF2   xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)               --------->HSFB2a(2)    <---------LBD16   aaaagacgctaccccagggatcaatcacgacctgggatgactgcaaaaaggctttcttggcaaaattcttctccaactccagaactgcaagactccggaa  14237500  Previous    Next  AGI:  At1g37471.1    Description:  transposable element gene. gypsy-like retrotransposon family (Athila), has a 3.0e-262 P-value blast match to GB:CAA57397 Athila ORF 1 (Arabidopsis thaliana) Range:  from: 14236998    to: 14239610    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
	printer-friendly version