Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                                 <---------ARR14(2)                                                                --------->HSFB2a(1)                                                                <---------HSFB2a(1)                                                               <---------HSFB2a(1)                                                               --------->HSFB2a(1)                                                           <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)                                                        --------->ALFIN1       --------->ARR14(2)                                                       <------NtERF2       <---------LBD16         --------->At5g28300                          --------->LBD16      --------->LBD16       --------------->AtSPL3                        <---------ANAC46    <---------LBD16  <xxxxxxxxxxxxxxxxsmallRNA(i)                       <---------LBD16   -------->P <------NtERF2                                      <---------LBD16   <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3) ---------HSFB2a(2)                                <---------ANAC58  ------>ZmHOX2a(1) ---------LBD16                                    <---------ANAC58 <---------ANAC58 --------DEAR3(1)                                  <---------ANAC46 <---------ANAC58     <---------ALFIN1 --------MYB46(3)                             <---------TOE1(2)--------->HSFC1(2)      <----------DOF2 --------HVH21                          --------->GLK1(1) --------->ALFIN1--------->ANAC46 --------->ANAC46 >ZmHOX2a(2)                           <------ZmHOX2a(1)<---------ANAC46 xxxxxxxxxxxxxxxx>smallRNA(i) --ARR14(2)                   <---------ZAT2 ------>ZmHOX2a(1) <---------HSFC1(2)  <---------ZAT18 ->ARR14(2)    <-----------HVH21      <xxxxxxxxxxxxxxxxsmallRNA(s)<xxxxxxxxxxxxxxxxsmallRNA(i)   gtcggggagacggtacctgtcaaatctatgggaactgggcaggaatcctagtttcgcggggtgggaacttccttacccgcggtatcgcgctctacctcat  14208400                                          <---------ANAC46                                         <------NtERF2                                         ------>NtERF2                                        <---------RAP2.3(1)                                       <---------RAP2.3(2)                                       <---------RAP2.6(2)                                       <---------RRTF1(3)                                       <---------DEAR3(1)                                        <---                                       <---------ANAC46                                          ----          <---------ZAT18              <---------RRTF1(2)                                       <----          <---------ZAT14             <---------LBD16          <---------ANAC58                ------          --------->ZAT18      ----------->RAV1(1)      --------->LBD16                        <-----          --------->ZAT14   --------->PCF2--------->DEAR3(1)   <---------ANAC58               -------         --------->ALFIN1 ----------->HVH21            --------->ANAC58                      <-------   --------->ANAC46     <---------At4g35610            --------->ANAC58                      --------   --------->ANAC58     --------->At4g35610            --------->ANAC55(2)                <-------TEIL   --------->ANAC58  <----------DOF2xxxxxxxxxxxxxxxx>smallRNA(i)                  >>>>>>>>>>WRKY26   gtcccaagcgagtggagtcgcatctttgctgacccacaattgcggcgaggttgcgatgcgcaatttcttggtttttggttaagttgatcaagttcatgat  14208500        --------->ZAT2        <---------GLK1(1)        --------->At4g35610       --------->LBD16        <---------ZAT2           <------NtERF2      <------NtERF2              <---------ANAC46     --------->LBD16            <---------LBD16    --------->ANAC46            <------NtERF2    <----------CDC5          <-----------HVH21   <---------LBD16          <------MYB46(1)   --------->LBD16          <------MYB83  <---------ANAC46          --------->ZAT2  <---------ANAC58      <-----------HVH21                  -------->ZAP1                    <--------  <---------ANAC58     --------->ATERF1(2)              --------->WRKY12                    <-------- ------ICU4            <---------ATERF1(2)              --------->WRKY38(1)                 <-------- ----->ATHB12          ----------->HVH21                --------->WRKY45                    <-------- -----YAB1           --------->At4g35610    --------->ATHB12                             ----------->HVH21 --->ARR11(3)    <---------ARR14(2)        --------->ICU4  <---------LBD16               ----------->TGA1 ----ARR11(3)    --------->ARR14(2)<------NtERF2        ----------->HVH21              <---------ANAC58 -->YAB1--------->GLK1(1)<------NtERF2   <---------At4g35610 --------->LBD16    <-------GAMYB --YAB1 <---------At4g35610 <---------ZAT2<---------MYB59<---------WRKY18(1)   <---------MYB46(3) ->ICU4<-----------ARR10------>NtERF2  <---------PCF2  <--------P   <-----------GT1    <---------ANAC58   cattgcgcggagctcagccaattcgctggcaggtcgcggagggacctgattagacgggttgaccgggttatctccatttggaggttgtatcgtgacgttt  14208600                                            --------->LBD16                                           <---------HSFB2a(2)                                           --------->HSFB2a(2)                                        --------->AGP1                                        <---------ARR14(2)                                        --------->ARR14(2)                                        --------->ARR11(3)                 <---------ANAC58      <---------At4g35610                 <---------ANAC46      --------->At4g35610     ------>NtERF2--------->LBD16  <-----------HVH21    --------->ANAC46xxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)                   --------->LBD16    <---------ALFIN1--------->ALFIN1  ----------->ARR10                   --------->ANAC46    --------->DEAR3(1)    ----------->GT1<------ZmHOX2a(2)               <---------LBD16 -ANAC58         <---------ANAC58 <------MYB46(1)                       ------>ZmHOX2a(1) -bZIP60(2)     <---------LBD16   <------MYB83                   --------->At4g35610             ---- -ANAC46     <---------ANAC58    --------->MYB59                 <---------At4g35610  <xxxxxxxxxxxxxx -ANAC58     <---------ANAC58--------->ATHB12 <xxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)  <----------DOF2 --   tgttctccgccccttgtttgcggagggggagtgatttggtcagatccagaagaattcgagttttgggagatgtcctccgcatcagcgttatggacagcat  14208700                                --------->ALFIN1                               --------->ATERF1(1)                              <------MYB46(1)                              <---------ATERF1(1)                              <---------At4g35610                              --------->At4g35610                              <------MYB83                             <---------DEAR3(1)                             <---------AtMYB61                             --------->ALFIN1                          xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)                          <---------MYB46(3)                          --------->MYB55(2)                         xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)                <---------ARR14(2)                         xxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)                 <---------ARR11(3)                     ------>ZmHOX2a(2)        <-----------TGA1----------->HVH21                     <-------TEIL            --------->bZIP60(1)              --------->ARR14(2)                     <-----------------------TaNAC69(2)      ------>ZmHOX2a(2)--------->AGP1                    <------ZmHOX2a(2)        <---------bZIP60(1)              <---------ARR14(3)                   --------->ARR11(3)        --------->ANAC55(2)              --------->ARR11(3)                   <---------ARR11(3)   --------->ANAC46    <---------At4g35610   --------->LBD16                   --------->ARR14(2)   <---------ANAC55(2) --------->At4g35610<------ZmHOX2a(2)                   xxxxxxxxxxxxxxxx>smallRNA(i)--------->TGA2(2)        --------->ANAC58                   <---------ARR14(2)   --------->ANAC55(2)<---------ARR14(2) --------->ARR14(3)                  --------->GLK1(1)    --------->SPL7      --------->ARR14(2)--------->At4g35610 ----->MYB46(3)   <---------GLK1(1)    <xxxxxxxxxxxxxxxxsmallRNA(s)   <--------P------>ZmHOX2a(2) xxxxxxxxxsmallRNA(fl3) <---------MYB52(1)<---------MYB52(1)<------ZmHOX2a(2)<---------At4g35610 ------>P        ----------->ARR10   <---------SPL7  <---------MYB52(1) --------->ANAC58   caaccctggttcggagagggagatccgttgggaggtgcccgtccgtaacgtcatcgtttgggatctgaactggtaagccagatcccgatgaattggatga  14208800                                                                                 <xxxxxxxxxxxxxxxxxxx                                                                               <xxxxxxxxxxxxxxxxxxxxx                                                                               <xxxxxxxxxxxxxxxxxxxxx                                                                              ----------------->AGL3                                                                              <------NtERF2                                                                              <-----------------AGL3                                                                             ------>NtERF2                                                                            --------->DEAR3(1)                                                                           <------NtERF2                                                                           --------->ATERF1(1)                                                                           --------->RAP2.3(1)                                                                           --------->RRTF1(1)                                                                          <---------RRTF1(1)                                                                          <---------DEAR4(2)                                                                          <---------ATERF1(1)                                                                          <---------RAP2.3(1)                                                                          <---------ORA47(2)                                                                         <---------RAP2.3(2)                                                                     xxxxxxxxxxxxxxx>smallRNA(se3)                                                                     xxxxxxxxxxxxxxx>smallRNA(le3)                                                                     xxxxxxxxxxxxxxx>smallRNA(fl3)                                                                     xxxxxxxxxxxxxxx>smallRNA(si3)                                                                    xxxxxxxxxxxxxxxx>smallRNA(se3)                                                                    xxxxxxxxxxxxxxxx>smallRNA(si3)                                                                    xxxxxxxxxxxxxxxx>smallRNA(s)                                                                    xxxxxxxxxxxxxxxx>smallRNA(i)                                                                    xxxxxxxxxxxxxxxx>smallRNA(fl3)                                                                    xxxxxxxxxxxxxxxx>smallRNA(le3)                                                                    xxxxxxxxxxxxxxxxx>smallRNA(si3)                    ------------>CBF                               xxxxxxxxxxxxxxxxx>smallRNA(se3)                <------MYB83                                       xxxxxxxxxxxxxxxxx>smallRNA(si3)                <------MYB46(1)                                    xxxxxxxxxxxxxxxxx>smallRNA(le3)              <---------MYB52(1)                                   xxxxxxxxxxxxxxxxx>smallRNA(fl3)             <-------GAMYB                        <---------KAN4(1)xxxxxxxxxxxxxxxx>smallRNA(s) <<<<<            *TSS<---------MYB46(3)    <---------At5g28300          <---------ALFIN1<-----------RAV1(1)            <---------MYB46(3)    --------->MYB111(1)             xxxxxxxxxxxxxxxxxx>smallRNA(si3)            ------>ZmHOX2a(2)     --------->MYB52(2)              xxxxxxxxxxxxxxxxxx>smallRNA(se3)           <---------YAB1         --------->MYB46(2)--------->ARR11(3)   <---------DEAR3(1)    <xxxxx          <---------ARR11(3)    <---------MYB52(1)--------->KAN4(1)----------->RAV1(1)         ------     ------>ZmHOX2a(2)         ------------>MYB.PH3(2)------>ZmHOX2a(2)  --------->ANAC46      <-----     <-------TEIL  <xxxxxxxxxxxxxxxxsmallRNA(i)  <---------KAN4(2)xxxxxxxxxxxxxxxxxx>smallRNA(le3)    <------ZmHOX2a(2)   xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(i2)      xxxxxxxxxxxxxxxxxx>smallRNA(fl3)   <---------ARR14(2)  <------------CBF   --------->ALFIN1      --------->PCF2<xxxxxxxxxxxxxxxxxxxxsmallRNA(se3)   --------->ARR14(2)<---------YAB1  <-----------GT1<---------ARR11(3)   <---------RAP2.3(3)<xxxxxxxx   attgggatccatgatcgttggtcacaattgatgtgttagttacggtgttggaatgatctatttctgtccccacagacggcgccaaatgtgggttctgaaa  14208900                                            <------ZmHOX2a(2)                                           --------->ARR11(3)                                           --------->ARR14(3)                                           --------->ARR14(2)                                           <---------ARR11(3) --------->ZAT6                            <---------ARR14(3) --------->ANAC46                          <---------ARR14(2) xxxxsmallRNA(le3)             xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(s2) xxxsmallRNA(si3)         <---------YAB1   <---------AGP1 xxsmallRNA(l2)        --------->GLK1(2)   --------->AGP1 <<<<<GATA-1           --------->ICU4     <---------CCA1(2) xxxxxxxxxxxxxxxxxxsmallRNA(se3)  xxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)                    <---------DAG2 --->GLK1(1)          <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)                              <----------DOF2 ----GLK1(1)  <---------YAB1  ---------->DOF2------>ZmHOX2a(2)                         ------->TEIL-- xxxxxxxxsmallRNA(s)<---------TOE2(3)    ----------->ARR10     ----------->GT1   xxxxxxxxxxxxxxxxxxxx   tccacactagagatttgtaattgagattatgagaaaggagggctagatcttcacagaaaccttgagagttatattgctaagaacgaatggactttttgta  14209000                                                                                                    <                                                                                                   --                                                                                                   --                                                                                                   --                                                                                             <xxxxxxx                                                                                           <xxxxxxxxx                                                                                           xxxxxxxxxx                                                                                         xxxxxxxxxxxx                                                                                     <---------------AGL15        ---------->DOF2         <XXXXXXXXXXXXXXXXXXXXMIR403                          --------------->AGL15       xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)                                        ----------------- ------->YAB1              ---------->DOF2       --------->YAB1                     <---------------- xxx>smallRNA(si3)     <---------ZAT6           --------->At4g35610           ------>ZmHOX2a(1) <----   ttgataatgtgaaaggagattacaagtgtaaaagtatgtgtgtgaatataagcagaattgaatgtgtcttccaagttgtccttgctcccttatataggtc  14209100                                                                           <---------ATERF1(1)                                                                           <xxxxxxxxxxxxxxxxsmallRNA(i)                                                           <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)                                                          <---------ARR14(2)                                                          <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)                                                        --------->MYB52(2)<-------TEIL                                                        <---------DEAR3(2)<---------ZAT18              <xxxxxxxxxxxxxxxxsmallRNA(i)              xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)             xxxxxxxxxxxxxxxx>smallRNA(i)              xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)          <---------ZAT2                               xxxxxxxxxxxxxxxx>smallRNA(s)          <---------At4g35610                        <-----------HVH21    <xxxxxxxxxxxxxxxxsmallRNA(s)          --------->At4g35610    =============HOX2a_HOX2a --------->ARR14(2)--------->At4g35610          --------->ZAT2        --------->ARR14(2)  xxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)         <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)       --------->ANAC58      <xxxxxxxxxxxxxxxxsmallRNA(i)     --------->ALFIN1   ======================HOX2a_HOX2a<---------At4g35610<------NtERF2    <xxxxxxxxxxxxxxxxxxxxsmallRNA(le3)      --------->KAN4(2)     <---------GLK1(1)    ------->MYC4       --------->At4g35610  <---------ARR14(2)    --------->CCA1(2)    <-------MYC4       <---------GLK1(1)    --------->ARR14(2)    --------->GLK1(1)    <-------PIF5       =======================HOX2a_HOX2a--------->At4g35610<---------At4g35610    ------->PIF5       --------->GLK1(1)    <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)    ------->PIF4       <---------At4g35610 <---------GLK1(1)     xxxxxxxxxxxxxxxx>smallRNA(i)    ------->MYC2      --------->ARR11(3)   <----------TaMYB80    <---------ARR11(3)    --------->ARR14(2)    xxxxxxxxxxxxxxxx>smallRNA(i)<xxxxxxxxxxxxxxxxsmallRNA(i)  --------->LBD16          <---------ARR14(2)    <-------PIF4      <---------ARR14(3)   xxxxxxxxxxxxxxxx>smallRNA(s)   xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)    <-------MYC3      <---------ARR14(2)  <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)        <-----------ARR10    <-------MYC2      --------->ARR14(2)  --------->ARR14(2) <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)    ------->MYC3      --------->ARR14(3)  <---------ARR11(3)xxxxxxxxxxxxxxxx>smallRNA(s)   ==============MYC_MYB------>ZmHOX2a(2) <---------ARR14(2)<xxxxxxxxxxxxxxxxsmallRNA(s)   --------->O2       <---------ARR11(3)  <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)  --------->HSFB2a(2)   <---------O2  <---------LBD16<---------ARR14(2)  <------MYB46(1) <xxxxxxxxxxxxxxxxsmallRNA(i)   <---------TGA1a  <xxxxxxxxxxxxxxxxsmallRNA(i)    <------MYB83 --------->ARR11(3)    <---------ARR11(3)   --------->TGA1a --------->LBD16     ------>ZmHOX2a(1)xxxxxxxxxxxxxxxx>smallRNA(s)   --------->ARR11(3)  ------------>OsbHLH66<------ZmHOX2a(2) <xxxxxxxxxxxxxxxxsmallRNA(s)   <---------ARR14(2)  ------->TEIL--------->DEAR3(1)<---------ARR11(3)  --------->bZIP60(2) <-----------HVH21 xxxxxxxxxxxxxxxxsmallRNA(s)   --------->GLK1(1)    --------->ANAC58<xxxxxxxxxxxxxxxxxxsmallRNA(si3) ------->ANAC58  --------->SPL7<---------GLK1(1) xxxxxxxxxxxxxxxx>smallRNA(i)    ------>NtERF2 ------->ANAC58<---------SPL7 ----------->ARR10 xxxxxxxxxxxxxxxx>smallRNA(s)xxxxxxxxxxxxxxxx>smallRNA(s) ------->ANAC46<-----------HVH21--------->ARR11(3)  <---------At4g35610 --------->ARR14(2) xxxxxxxxxxxxxsmallRNA(fl3) --------->LBD16<xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3) --------->LBD16 xxxxxxxxxxxxsmallRNA(le3)<---------LBD16xxxxxxxxxxxxxxxx>smallRNA(i)xxxxxxxxxxxxxxxx>smallRNA(i) xxxxxxxxxxxxx>smallRNA(s2)<---------ANAC46<xxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3) <---------ANAC46 <--- xxxxxxxxxxx>smallRNA(fl3)--------->At4g35610   <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3) <---------CCA1(2) >AGL3  <--------P<---------LBD16<------ZmHOX2a(2)  <xxxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)   ------>ZmHOX2a(1) -AGL3xxxxxxxxxxxxxxxx>smallRNA(i)------>ZmHOX2a(2) --------->At4g35610xxxxxxxxxxxxxxxx>smallRNA(i) < -----WRKY12 xxxxxxxxxxxxxxxx>smallRNA(s)xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3) <---------LBD16  <xxxx   tacgcacgtggtagctccgtccgggatctgcggagatcgtcctggatattcggcaggtcagttccgagatatcaggtccgctccgcgaatatctcctcat  14209200                    <---------CCA1(2)             <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)             xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)                             <---------PCF2  <-----          <-------GAMYB                                                      --------->ZAT18   xxxxxx         --------->MYB111(2)            <---------WOX13(1)                   <---------ZAT18   <-----         ----------->GT1           --------->At4g35610                   <---------ARR14(2)    <xxxxx         <---------MYB46(3)        <---------ANAC55(2)                 xxxxxxxxxxxxxxxx>smallRNA(i) -         xxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)                          <---------ANAC58        <------         xxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)             --------->ANAC58   <---------RAP2.3(3)   <x       xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(i2)<---------ANAC46           <---------ANAC46     <---------ANAC58     <---------TOE1(2)             --------->ANAC55(2)    --------->ANAC58<-----------RAV1(1) -------     <---------TOE2(2)             <---------At4g35610   <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)<------    ------>ZmHOX2a(1)  <-----------GT1<---------MYB46(3) <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3) ------- ------ICU4<---------YAB1     --------->REM1(1)  ----------->RAV1(2)  <---------ANAC58--------->MYB52(2) xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3) --------->ATHB12 <xxxxxxxxxxxxxxxxxxxxsmallRNA(s2)   <---------ANAC58 xxxxxxxxxxxxxxxxxxxsmallRNA(i2) <-----------RAV1(2)  <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)<---------ANAC46   cagttcctaggttgttattcgcttatctcccttcatcaggtgattgggtttatctggcccaagtacccattcgcgtatgtgggctcattagttgcgtagg  14209300  Previous    Next  AGI:  At1g37200.1    Description:  transposable element gene. gypsy-like retrotransposon family, has a 1.3e-185 P-value blast match to GB:AAD11615 prpol (gypsy_Ty3-element) (Zea mays) Range:  from: 14203495    to: 14208812    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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