Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                     <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)                                                  <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)                                                  --------->ARR14(2)                                                --------->MYB52(2)                                                <---------DEAR3(2)                                                xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)                                               xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)                                               xxxxxxxxxxxxxxxx>smallRNA(s)                                             <-----------HVH21                                            <xxxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)                                    <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)                                    <---------ARR14(2)    --------->CCA1(2)                               ------>ZmHOX2a(1)xxxxxxxxxxxxxxxx>smallRNA(s)                         =============HOX2a_HOX2a <---------ARR14(2)                        <---------ARR11(3)  --------->ANAC58       <---------ATERF1(1)                        <---------ARR14(2)  <---------At4g35610   <-------TEIL                        --------->ARR14(2)  --------->At4g35610   <---------ZAT18                       <---------GLK1(1)    xxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)                    --------->LBD16 --------->KAN4(2)     --------->GLK1(1)                   <---------ANAC46 --------->ARR14(2)    <---------GLK1(1)                  <---------LBD16  <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)                  --------->At4g35610       --------->ANAC58    --------->ARR14(2)                ------>ZmHOX2a(2)  <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)                ======================HOX2a_HOX2a<---------At4g35610<------NtERF2               =======================HOX2a_HOX2a--------->At4g35610<---------At4g35610 --------->SPL7<---------GLK1(1)   xxxxxxxxxxxxxxxx>smallRNA(s) <---------ARR14(2) ----->ALFIN1  --------->GLK1(1)   <---------GLK1(1)     xxxxxxxxxxxxxxxx>smallRNA(i) ---MYC3       <---------At4g35610 <----------TaMYB80    <---------ARR11(3)    <---------ARR11(3) -->PIF4       <------ZmHOX2a(2)  --------->ARR14(2)  --------->LBD16          --------->ARR11(3) ---PIF4      <---------ARR14(2)  <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)        <-----------ARR10 -->MYC4      --------->ARR14(2)  <---------ARR11(3) <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3) ---MYC2      --------->ARR14(3)  <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)  --------->LBD16 -->MYC3      <---------ARR11(3) <xxxxxxxxxxxxxxxxsmallRNA(s)   <-----------HVH21 -->MYC2      --------->ARR11(3) xxxxxxxxxxxxxxxx>smallRNA(i)xxxxxxxxxxxxxxxx>smallRNA(i) ---PIF5      <---------ARR14(3) xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)   <xxxxxxxxxxxxxxxxsmallRNA(s) ---MYC4    <xxxxxxxxxxxxxxxxsmallRNA(i) xxxxxxxxxxxxxxxx>smallRNA(i)   <---------ANAC46           xx -->PIF5 <---------LBD16--------->ARR11(3)  <------MYB83 --------->ARR11(3)    --------->ARR14(2)<--- ----TGA1a --------->LBD16------>ZmHOX2a(2) <------MYB46(1) <xxxxxxxxxxxxxxxxsmallRNA(i)        ----- ----O2  --------->SPL7--------->GLK1(1)xxxxxxxxxxxxxxxx>smallRNA(s)--------->At4g35610  <---------ICU4 --->O2<---------SPL7 ----------->ARR10 <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)  <---------ARR14(2)<--- --->TGA1a<---------LBD16<------ZmHOX2a(2)  --------->bZIP60(2)xxxxxxxxxxxxxxxx>smallRNA(s) <xxxxxxxx ----->OsbHLH66--------->At4g35610<---------ARR14(2)xxxxxxxxxxxxxxxx>smallRNA(s)        <xxxxxxxxxxxx >TEIL <-----------HVH21<xxxxxxxxxxxxxxxxsmallRNA(i)<xxxxxxxxxxxxxxxxsmallRNA(s)     ------>ZmHOX2a(1)   tggtacctccgtccgggatctgcggagatcgtcctggatattcggcaggtcagttccgagatatcaggtccgctccgtgaatatctcctcatcagttcct  14199700                                                                                       <xxxxxxxxxxxxx                                         ----------->RAV1(2)                           <------MYB83                               xxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)                     xxxxxxxxxxxxxx            <---------CCA1(2) xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)                    <------MYB46(1)     <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)                                            <---------AtMYB61     xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)                                            <---------TOE1(2)   <---------YAB1          xxxxxxxxxxxxxxxx>smallRNA(s)                             xxxxxxxxxxxxxxxxx  <-------GAMYB            --------->ANAC55(2)    --------->ANAC58                 <---------ANAC58 ----------->GT1           <---------At4g35610    --------->ANAC58                 <---------ANAC58 --------->MYB111(2)       --------->At4g35610   <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)----------->ARR10 xxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3) <----------DOF2                              <xxxxxxxxxxxxxxxxsmallRNA(le3) xxxxxxxxxxxxxxxxxxxxx>smallRNA(si3) <---------ANAC58                  <---------At4g35610  ------>ZmHOX2a(1) <---------MYB46(3)        <---------ANAC55(2)   <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3) --------->SPL7 xxxxxxxxxxxxxxxxxxxxx>smallRNA(i2)  <---------ANAC58         <---------ANAC46 <---------At4g35610 ------TOE1(2)           <-----------RAV1(2)   <xxxxxxxxxxxxxxxxxxxxsmallRNA(s2)  <-------TEIL ->ZmHOX2a(1)         --------->REM1(1) <---------ARR14(2)    <---------ANAC58 --------->ZAT2 ------TOE2(2) <-----------GT1xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)    --------->At4g35610 <xxxxxxxxx xxxxxxxxxxxxxxxsmallRNA(se3)----------->HVH21<xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)<---------ANAC46 xxxxxxxxxxxsmallRNA(i2)xxxxxxxxxxxxxxxx>smallRNA(s)          <---------ANAC58 --------->At4g35610   aggttgttattcgcttatctcccttcatcaggtgactgggcttatctggcccaagtacccattcgcgtatgtgagctcattagctgcgtaggtcctctac  14199800               <----------DOF2           <---------ZAT18     <------MYB83        <------MYB46(1)        <------MYB46(1)                <---------ARR14(2)        <------MYB83        <---------ANAC46                 <---------GLK1(1)       --------->ALFIN1     <---------ANAC58         ------>ZmHOX2a(1)               <---------ALFIN1       <---------AtMYB61  <------MYB83               --------->HSFB2a(2)  <xxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)      <----------DOF2  <---------ANAC58              <---------HSFB2a(2)----------->RAV1(1)     <---------ANAC58  <---------ANAC58             <---------LBD16--------->ZAT2  <---------ALFIN1     <---------ANAC58  <-------GAMYB             <---------GLK1(1) <---------At4g35610  <---------ZAT18 <-----------RAV1(1)           <---------ARR14(2) --------->At4g35610         <----- xxxxxxxxxxsmallRNA(se3)  <------MYB46(1)       --------->ARR14(2) <---------ZAT2 --------->ANAC46 xxxxxxxxx>smallRNA(si3)<--------P          ------->PIF5   <xxxxxxxxxxxxxxxxsmallRNA(i)        <----- xxxxxx>smallRNA(le3) <---------MYB46(3) <-----------RAV1(2) --------->GLK1(1)    ------>NtERF2<----- xxxxxxxxxxxxxsmallRNA(se3) <---------ANAC58<-------PIF5<---------ANAC46<xxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)   ttggtgggcttggtgggcttttgtgggttggcttggtatttttgcaggtggattcctggagggaaatccagctccaacatttgccccccagcccattgag  14199900                                                                                               <-----                                                                                             <-------                                 <---------ANAC55(2)                                         <-------                                --------->MYB59                                       <---------DEAR3(2)                               <-----------RAV1(2)                                    <------MYB83                             <-----------HVH21                                        <------MYB46(1)                          <xxxxxxxxxxxxxxxxsmallRNA(i)                           <xxxxxxxxxxxxxxxxsmallRNA(i)                    ------>NtERF2----------->GT1               <---------YAB1   <------ZmHOX2a(2)                   --------->ZAT18              --------->ARR11(3)              xxxxxxxxxxxxxxxx>smallRNA(s)        <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)   <---------AHL20(1)              ===================== ----ANAC58        <---------ZAT18 <--------P   --------->AHL20(1)             --------->ARR11(3) ----ANAC58      <---------At4g35610            <---------ARR11(3)             <---------ARR11(3) ----ANAC46      --------->At4g35610 <---------YAB1<---------YAB1 <---------WOX13(1) xxxxxxxxxxxxxxxx   tgagtaggcgaactcgatgagcggacatataggtcaggtaagattgcgaaaatattcttgatgagatgatagatgtgataagatcagtcggttttgagga  14200000                                                       --------->ANAC55(2)                                                       <---------ANAC55(2)                                                       --------->ANAC58                                                       --------->ANAC46                                                       --------->ANAC58                                                      <-------TEIL                                                     --------->CCA1(2)                                                     --------->ARR14(1)                                                    --------->ARR14(2)                                         --------->ARR11(3)                                   ------->GAMYB    --------->ARR11(1)                                --------->MYB52(1)  <---------ARR14(2)                              ------>ZmHOX2a(1)    <---------GLK1(1)                               <x         --------->MYB52(1)  <---------ANAC55(2)  ----------->ARR10                               <-- --------->ANAC46            --------->TOE1(3)   <------ZmHOX2a(1)                --------->MYB46(3) -ZmHOX2a(1)                 --------->TOE2(3)<---------HSFB2a(2)              *TSS              <xxx --TOE1(3)                --------->GLK1(2)   --------->HSFB2a(2)           <---------ANAC46    <---- --TOE2(3)               <---------GLK1(2)    <---------LBD16           <---------ANAC46        <---- =HOX2a_HOX2a           <---------At4g35610  <---------ANAC46          <---------At4g35610 --------->ALFIN1 >smallRNA(i)      <---------GLK1(1)     <---------ARR11(3)        <---------MYB46(3)    <xxxxxxxxxxx   taaactcaacaaaacgatttgatttcagattccttaaccgaaagatttcgaggagatacgcgagataagtcgttgctgatgtgaacgactgagatggagc  14200100           --------->ANAC58           --------->ANAC58          --------->SPL7                        <---------GLK1(1)         <---------ALFIN1                       --------->GLK1(1)        <---------ZAT18                         <------ZmHOX2a(2)        --------->ZAT18                <------NtERF2        --------->ZAT14               <xxxxxxxxxxxxxxxxsmallRNA(s)        <---------ZAT14               --------->LBD16        <---------ABI4(2)            <------NtERF2                                       <-----------GT1      <---------At4g35610           ------>NtERF2------>ZmHOX2a(2)             ------>NtERF2      --------->At4g35610      <-----------RAV1(2)                           --------->RAP2.6(3) xxxxxxxxxxxxxxxsmallRNA(i)  <---------AGP1    --------->ARR11(3)          ----------->TGA1 -------CCA1(2)    <-----------GT1  <---------LBD16        <---------HSFB2a(2)<---------RAP2.6(2) xxxxxxxxxxxxxsmallRNA(s) <---------HSFB2a(2) --------->GLK1(1)    <---------ICU4 <----------DOF2 -----ANAC58      ----------->HVH21<---------ANAC46  --------->ZAT14       ----------->HVH21      <-- -----ANAC58--------->DEAR3(1)<------ZmHOX2a(2)<---------ARR11(3)  --------->YAB1 =================== xxxxxxxxxxxxsmallRNA(si3)--------->HSFB2a(2) <---------GLK1(1)  --------->ARR11(3) --------->AHL20(2)   gtctcttcagcgcaccgcatttgacggtctagatcaggcgcggagaagagatctctgcaatctcgaaaatcatggtgatgacggctttaaataacttccc  14200200             --------->TGA2(2)            <-----------HVH21            <-----------TGA1           --------->O2           --------->TGA1a           --------->bZIP60(2)           <---------O2           <---------TGA1a  --------->ANAC46           ====================MYC_MYB           --------->ANAC55(2)           --------->bZIP60(1)           <---------TGA2(1)======================================bZIP_DOF           --------->TGA2(1)--------->TGA1a           <<<<<<<<<<HY5    --------->ANAC58           <---------bZIP60(1)                                              <---------MYB52(1)           --------->ANAC46 --------->ANAC58                     <---------At5g28300    ----------->GT1        ----------->HVH21 --------->ANAC46                      <-----------GT1        --------->CCA1(2)      --------->O2     ------->GAMYB <---------TOE1(3)      --------->AHL20(2)    ---------->DOF2   -    <---------ALFIN1   ===============MYC_MYB              <---------YAB1 <---------ANAC58    <------ -------CCA1(2)    --------->MYB46(3)<---------TOE2(3) <----------DOF2    <---------ANAC58    ------- ====================bZIP_DOF    <-----------HVH21  ------>ZmHOX2a(1)     <---------ANAC46    -------   atctctccacttgacgtcacaacaactcacacgactgtcaaggtaacttctctcctcctttattatttactgtgtttcgttttgtaaagatagaaaaatc  14200300         <----------DOF2                                  xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(i2)      <-----------GT1                                    ------>ZmHOX2a(2)  <----------DOF2                                      <---------ARR14(2)                      ------ --------->ID1                                         --------->ARR14(2)          <---------At4g35610 ---ARR11(3)                                        --------->HSFB2a(2)       <----------DOF2  <----- -->ARR11(3)           <---------TOE1(2)            <---------HSFB2a(2)  <----------DOF2    --------- -->GLK1(2)           ------>ZmHOX2a(1)         <----------DOF2  <----------DOF2   <---------CCA1(2)   tcgtcttttttcttttgctatctccttcgtttctctactagtactcccctctttctcgatctgccctcttttgctcttttctttcatctctctcgtcctt  14200400                                                                   <-----------HVH21                                                                <---------bZIP60(2)                                             --------->ANAC46   <---------O2                                             --------->ANAC58   <---------ANAC55(1)                                             --------->ANAC58   <---------ANAC58                                           ---------->DOF2      <---------TGA1a                                           ===============================bZIP_DOF                                     --------->LBD16            --------->TGA1a                                    --------->HSFB2a(2)         <---------ANAC55(2)                                    <---------HSFB2a(2)         --------->ANAC55(2)                                   <---------LBD16              <---------ANAC58                               <---------ARR14(2)          ---------->DOF2           ------>MYB46(1)     --------->KAN4(2)   --------->AtMYB61         <---------STY1(1)           ------>MYB83        --------->ARR14(2)  =======================MYC_MYB        --------->ANAC58       <---------GLK1(2)   ------->GAMYB--------->O2 --------->STY1(1)   <---------ETT(2)           <---------HSFB2a(1)  ----------->RAV1(1)    --------->ZAT6 >ZmHOX2a(1) <---------ATHB12 --------->HSFC1(2)  --------->MYB46(3) --------->YAB1                 - -----DOF2 --------->MYB52(1) <---------HSFC1(2) =========================MYC_MYB                 <-- ->ID1  --------->ANAC58      --------->HSFB2a(1)-------->P===============bZIP_DOF       <---------PCF2   ttctgtcgaaacccaacgatgagcgacttcgaagattcccagaataaaagcaaccacagtacaaagacgtgtcataaccctaggcgaaatgggtccaatt  14200500         -------->P                                          --------->ANAC46                       <        --------->WOX13(1)                                   --------->ANAC58                --------       --------->MYB46(3)                                    --------->ANAC58   <---------ZAT2-------  ------>NtERF2                                           --------->ATERF1(1)--------->DEAR3(1)     -  <------NtERF2                               --------->ANAC58     ----------->HVH21         <------- --------->RAP2.6(2)                          --------->ANAC58   --------->At4g35610        <-------- --------->ANAC58                             --------->AtLEC2   <---------At4g35610  <---------ETT(2) --------->ANAC58                    --------->DAG2       <------NtERF2     --------->At4g35610   <-- --------->ANAC46             >>>>>>>>>TBF1   --------->ANAC46  --------->DEAR3(1)    --------->ETT(2) -------->SPL7         --------->At4g35610------>NtERF2<------ZmHOX2a(1) ---------->DOF2    xxxxxxxxx -------SPL7  --------->ARR14(2)   ---------->DOF2   --------->ALFIN1   --------->MYB52(1)--------->AtMYB61   cgtccgccatcaaccagagccgattagccgaagaagaaaaaggctgccaagcaaggaggaggcacgccgatgacgaacagcgacctggtcgacctccgga  14200600  Previous    Next  AGI:  At1g37190.1    Description:  transposable element gene. pseudogene, hypothetical protein, contains similarity to hypothetical proteins from (Arabidopsis thaliana) Range:  from: 14200079    to: 14202578    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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