Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                           <---------MYB46(3)                                                                         --------->ATHB12                                                                        <---------YAB1                                                                     --------->ALFIN1                                --------->ARR11(3)                 --------->ZAT2                          <---------HSFB2a(2)                      <---------ZAT2                      <-------GAMYB                               <---------TOE1(2)                     <---------ANAC58                            <-----------RAV1(2)                     <---------ANAC46                           xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)                     <---------ANAC58                           xxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)                    xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)      xxxxxxxxxxxxxxxxxxxxx>smallRNA(i2)               --------->ARR14(2)                            xxxxxxxxxxxxxxxx>smallRNA(s)   xxxxxxxxx        xxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)       <--------P        xxxxxxxxxxxxxxxx>smallRNA(s)    <---------HSFB2a(2) --------->YAB1            ----------->GT1       xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)---------->DOF2 <---------ICU4           --------->ALFIN1  xxxxxxxxxxxxxxxx>smallRNA(i)  <---------ARR11(3)       --------->WOX13(1)        <---------O2 -GLK1(1)      <---------ARR14(2)  <----------DOF2      <xxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)<---------GLK1(2) >GLK1(1)   xxxxxxxxxxxxxxxx>smallRNA(s)--------->HSFB2a(2)<---------ATHB12<---------WOX13(1)   catttctgagtcttgcagttctggcgttggagaagaactttgctagaaaagccttcttgcaatcatcccaggtggtgattgagtcatgtggtagattctt  14130200                   <------NtERF2                  ------>NtERF2                ---------->ID1               <-----------HVH21              <-----------RAV1(1)            <----------DOF2         <xxxxxxxxxxxxxxxxsmallRNA(s)       <---------ANAC58                 --------->ANAC58       xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)                                       <------MYB83       <---------ANAC58               --------->MYB52(1)                           <------MYB46(1)      xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)                             <---------AHL20(2)      xxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)--------->ANAC46               --------->AHL20(2)      xxxxxx      xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(i2)                       --------->bZIP60(1)     ---------->DOF2     xxxxxxxxxxxxxxxx>smallRNA(i)   --------->MYB46(3)        ----------->HVH21   --------->MYB59    xxxxxxxxxxxxxxxx>smallRNA(i)    <---------MYB52(2)    <---------REM1(2)       --------->MYB46(2)   --------->At4g35610   --------->YAB1 --------->ANAC58  <---------ZAT14       <<<<<<<<<MYB98xxxxxxx   <---------At4g35610  <xxxxxxxxxxxxxxxxsmallRNA(s)      --------->ZAT14       <---------MYB52(1) xxxxxxxxxxxxxx>smallRNA(i2)   ----------->GT1       <xxxxxxxxxxxxxxxxsmallRNA(i) --------->MYB111(1)   ctctcagatgtgtgctttgtcgcccaaggagaatggaaacaaacggaacttaaatccgtcttcactgacaccattaatttttgttaggttgtaaagccta  14130300                        <---------HSFB2a(1)                        <---------HSFC1(2)                        --------->HSFC1(2)                        --------->HSFB2a(1)                       <---------KAN4(2)                       <---------ARR14(2)                       --------->ARR14(2)                       --------->GLK1(2)             <---------MYB46(3)            --------->ALFIN1                       ---------->ID1            <---------AtMYB61         <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)                     <---- xxxxxxxxxxxxxxxxx>smallRNA(fl3)    <xxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)         --------->YAB1------- xxxxxxxxxxxxx>smallRNA(le3)       xxxxxxxxxxxxxxxx>smallRNA(s)     xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)   tcgaattcatcaaggtggtcgagggaatcttccattggcagaccatggaatttgttcccatgagtcatcgagatgagaccactcttaatcttgaagttgt  14130400                                              --------->ALFIN1                                     --------->At5g28300                                   <---------DEAR3(1)                                ----------->HVH21                              <---------At4g35610                      <-----------ARR10     <---------ANAC46                      <---------ARR11(3)  ------>ZmHOX2a(2)                 --------->ZAT18----------->TGA1             --------->ALFIN1 --------->At4g35610   ------->TEIL          <------NtERF2  <---------HSFB2a(2) --------->ARR11(3)--------->ARR11(3) <---------At4g35610  --------->HSFB2a(2) <---------AHL20(1)<---------ARR11(3) --------->At4g35610 <---------LBD16 <-------TEIL ===================HOX2a_HOX2a           <xxxxxxxxxxxxxxxxsmallRNA(i) -----YAB1  <------ZmHOX2a(1) ------>ZmHOX2a(1)   <-------TEIL    <-----------RAV1(1) ---->GT1   =====================================HOX2a_HOX2a      <xxxxxxxxxxxxxxxxsmallRNA(i)   tattctggatagaaggaggtgcaatatctttcctctgacggtgatctcgtggtgcatcttcagcaccaatgttggcagggccattctattgattttgttc  14130500                      ----------->GT1                     <---------TOE2(3)                 <-------GAMYB                --------->MYB55(2)                                                               ----                --------->MYB111(1)                                                              ----                <---------MYB46(3)                                                             ------                --------->MYB111(2)                                                            ------               <--------P                <xxxxxxxxxxxxxxxxsmallRNA(fl3)                        <-----             <---------MYB46(3)  <---------WRKY18(1)                                           <-----            --------->ALFIN1    --------->WRKY12                    --------->ANAC55(2)      <------ZmHOX2a(1)            <---------AtMYB61   --------->WRKY38(1)                 <---------ANAC46         ========        <---------ANAC58    <---------TOE2(3)  <----------DOF2    --------->CCA1(2) <-------GAMYB<---        <---------ANAC58    --------->DAG2 <-----------GT1       --------->ARR14(2)<---------ANAC46 <  <---------ATHB12   <---------TOE1(3)  xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)      <---------MYB46(3)   gtcaaccatttcgagtggttgttagggtaaaaggttgactgtgtttctcctttctctgagttcgcgagttacgcggtcgaagttgtcgttgaagaggagg  14130600         <---------At4g35610 --------->ZAT2         <-------GAMYB       <---------ZAT2        <---------MYB46(3)   --------->At4g35610   <--------P                *TSS ----->GLK1(2)               <---------At4g35610 ----->ARR14(2)             ----------->RAV1(1) --->HSFB2a(1)              ========================RAV --->HSFC1(2)            --------->AtLEC2     <------ZmHOX2a(2)           <---------MYB52(1) ----HSFC1(2)          <---------ANAC58  xxxxxxxxxxxxxxxxxxxxx>smallRNA(se3) ----HSFB2a(1)         <---------ANAC58  <---------LBD16     xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)--- =====================HOX2a_HOX2a       ----------->RAV1(2) --------->ANAC58                <-------- ------ARR14(2)        <---------AtLEC2------->TEIL         --------->ANAC58           ----------->GT1 ---------YAB1 ------>ZmHOX2a(2)    <---------REM1(1)  <----------ID1--------->ANAC46<------------CBF   ttctggttgtctgttgatcgagtttgcatgcagcagagttgtacctggatcaagaagacaacaagaaaaacacacagttagtaactgaattgaaaattga  14130700                                                               --------->DEAR3(1)                                                              --------->RAP2.3(1)                                                             ------->GAMYB                                                             <---------RAP2.3(1)                                                             <---------ATERF1(1)                                                       <xxxxxxxxxxxxxxxxsmallRNA(s)                                                 <xxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)                                                --------->ANAC46                                                --------->ANAC58 <------NtERF2                                                --------->ANAC58------>NtERF2                                               <xxxxxxxxxxxxxxxxxxxsmallRNA(le3)                                             <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)                                           <xxxxxxxxxxxxxxxxsmallRNA(i)                                         xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)                                       <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)                                      <---------MYB52(2)    <---------DEAR3(1)                   ----------->GT1    --------->MYB46(3)  --------->MYB52(1)             --------->ANAC58         <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)             --------->ANAC46        <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)          ------>ZmHOX2a(2)          <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)                         ---  --------->ARR11(3)                 <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)                         ===  <---------ARR11(3)             ----------->GT1<xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)          ------ ------->DOF2--------->ANAC58  <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)   ----------->GT1        <------ ----CBF<---------ARR11(3) --------->TOE2(3) xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)          ---------   aaaagaacttgatctaagcaagtgtgaaatctcaaatgtaacaaacaaacacccaattggcaacggcgccaaatggataataggtttttaagaagcatga  14130800                             <---------ARR14(2)                            <------ZmHOX2a(1)                    --------->ANAC55(2)                    <---------ANAC46  --------->ANAC58  <---------ANAC55(2)  --------->ANAC58 <---------LBD16 --->ZmHOX2a(2)   --------->MYB52(1)                            <---------TOE2(2) ==================================HOX2a_HOX2a           <---------ALFIN1 --->ATHB12      <---------SPL7                          --------->AtMYB61             ------->TEIL < ---YAB1        <---------ANAC58                      <------ZmHOX2a(1)     ----------->HVH21      -- >YAB1          <---------ANAC58          --------->ARR11(3)    <---------TOE1(2)      <-----------GT1   tcgcaagaatgccacaaggcttacgggagaggatgctggataatggtcttgatcaaggaccactccttggtttatcttatgacccgatgtatccatttct  14130900                                                  <---------ARR14(2)                                                  --------->ARR14(2)                                                  <-----------ARR10                                                  --------->ARR11(3)                     --------->ZAT14             <---------ARR14(1)                     <---------ZAT14             <---------CCA1(2)                     <---------ZAT18             --------->GLK1(1)              --------->ARR14(2)           ---------->DOF2              <---------ARR14(2)          --------->YAB1          --------->TOE1(3)      --------->ARR14(2)          --------->TOE2(3)      --------->ARR11(3)            <---------MYB52(1)         ----------->RAV1(2)     <---------ARR14(2)          --------->HSFB2a(2) --------->ZAT6 ====================RAV         <---------GLK1(2)<---------ARR11(1)         <----------DOF2 ----------->RAV1(1) <-------TEIL<---------ARR14(3)      <---------ZAT14 --------->ANAC58      ====== ---------ALFIN1<---------LBD16  --------->ARR14(3)      --------->ZAT14 --------->ANAC58      ====== ------->MYB46(3) --------->LBD16<---------ARR11(3)     <---------ZAT6   <---------ALFIN1      ------   caccaccataaacctgaatccggttcactatagaagattttcaataaaagcatatctagtgttctggtatttggcacacctttacactattggtgtcctt  14131000              --------->At4g35610           <---------GLK1(1)           <------ZmHOX2a(2)           --------->GLK1(1)          <---------AGP1          --------->GLK1(2)          --------->ARR11(3)          <---------ARR14(2)          --------->ARR14(2)          <---------ARR11(3)          <-----------ARR10         <------ZmHOX2a(1)                               <---------ICU4      --------->DAG2                                    ------>ZmHOX2a(1)     ---------->DOF2                         <xxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)             <------- =================HOX2a_HOX2a            <---------WRKY18(1)    --------->ANAC46  ----------->HVH21 - ==================HOX2a_HOX2a      ------->TEIL        --------->ICU4           <---------ANAC46   - >ZmHOX2a(1)------>ZmHOX2a(2)     <-------TEIL          <---------YAB1          --------->At4g35610<-   gttcacaaaaaggatctgcttcaatacttggcgaagtgcatcttgaccagaagaagtcctcattacatgctactatacaagtggctgacattgtttaaca  14131100  Previous    Next  AGI:  At1g37100.1    Description:  transposable element gene. gypsy-like retrotransposon family (Athila), has a 5.2e-203 P-value blast match to GB:CAA57397 Athila ORF 1 (Arabidopsis thaliana) Range:  from: 14127247    to: 14130629    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
	printer-friendly version