Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                  ------->TEIL        <---------At4g35610        <---------ZAT2                                                                           ----        --------->ZAT2                     --------->ANAC55(2)                                   <---        --------->At4g35610      xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)                 ------>ZmHOX2a(1)        <------NtERF2     --------->ARR14(2)                                          ---------------       <<<<<<<<<AtERF-3   <---------ARR14(2)                                          <--------------       <<<<<<<<<AtERF-4  --------->ATHB12<xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(i2)        <---------------    <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3) <xxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)         ---------------- -------ALFIN1  xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(s2)--------->bZIP60(2)--------->ARR11(3)       ----- -------->RAV1(1)<-----------RAV1(1)   <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)         ---------------- -------------AGL1  <xxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)                <---------ARR11(3) <---------YAB1 --->ANAC46    xxxxxxxxxxxxxxxx>smallRNA(s)<---------ANAC55(2)        <xxxxxxxxxxxxxxxxsmallRNA(i) -ARR14(2)   <---------YAB1    xxxxxxxxxxxxxxxx>smallRNA(s)          ------>MYB83    <--------------- >ARR14(2)   <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)  --------->ANAC46 ------>MYB46(1) ----------------   ccacattggcagctcatgaatgttgcaagattggccaattccatcaagtattccacatcaccacaaataccaagctcttgcatcgtttccttatgagggt  14104400                                                                                                <----                                                                                                <----                                                                                               <-----                                                                                               ------                                                                                               ------    <---------ZAT18                                                                            ------ ----->ARR14(2)                                                                                <----- ------ARR14(2)                                    <------MYB83                                ------ >AGL15                                            <------MYB46(1)                             <----- -AGL15                                           <---------DEAR3(1)                          <------ --AGL1                                          <---------MYB52(1)                   ----------->RAV1(1) ->AGL1                            --------------->AtSPL8                            xxxxxxxxxxxxxxxx ---->GLK1(1)                    --------->YAB1  <--------P               <---------MYB52(1)  <------ ->AG                           <---------YAB1  <-------GAMYB            <---------DEAR3(2) <-------- --AG                  ------>ZmHOX2a(1)       <---------MYB46(3)  ------>ZmHOX2a(1)xxxxxxxxxxxxxxxxx ->AGL3            <xxxxxxxxxxxxxxxxxxxxxsmallRNA(i2)           ------>ZmHOX2a(1) xxxxxxxxxxxxxxxxxxx   atctagttccctcaaacttcaactccttcaaatattgatagtactcgctcggttggctctctcttcctcctaggccggtttcttctcccaacaggggttg  14104500 --MYB83 --------->LBD16 --MYB46(1) ----DEAR3(1) --->MYB111(1) --->MYB46(2) --->MYB111(2) ----AtMYB61                 ------>ZmHOX2a(1)                                       ------->GAMYB --->MYB55(2)   ====================HOX2a_HOX2a                                <----------DOF2 ----MYB46(3)   ------>ZmHOX2a(2)                            xxxxxxxxxxxxxxx>smallRNA(si3)  <-------- --P   <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)           xxxxxxxxxxxxxxxx>smallRNA(i)  --------->MYB46(3) xxxxxxx>smallRNA(fl3)      --------->TOE2(3)  ---------->DOF2               --------->At4g35610 ---MYB55(1)  --------->ARR11(3)  <---------ARR14(2) <-------TEIL            <---------At4g35610 -MYB46(3)    <---------ARR11(3)  --------->ARR14(2)--------->ALFIN1   <<<<<<<<<TBF1<---------MYB52(2) xxxx>smallRNA(se3)   <xxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)   <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3) xxxx>smallRNA(i2)  <xxxxxxxxxxxxxxxxsmallRNA(i) --------->DAG2xxxxxxxxxxxxxxxxxxxxx>smallRNA(i2)----   gtgtatcatccccgatgatctcaacctcttcctcagaaaccgcttcttcaaaaggtgcttcttcatggtgttcttcttcagcttcaacgaccctctttcc  14104600                               <---------ANAC58                               <---------ANAC58                                             xxxxxxxxx                            <---------RAP2.6(2)                                            <---------ANAC58                           <---------At4g35610                                             <---------ANAC58                       xxxxxxxxxxxxxxxx>smallRNA(i)                                  --------->ARR14(2)                     --------->ATHB12                                                --------->GLK1(2)                  <---------AtLEC2                                          --------->ZAT2 <---------ANAC46                  xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(s2)                      <---------ZAT2---------->ID1                  <---------ANAC58  <---------At4g35610                    <xxxxxxxxxxxxxxxxsmallRNA(i)      xxxxxxxxxxxxxxxxxxxxxx>smallRNA(i2)                             <---------DEAR3(1)  <xxxxxxxxxx    xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(s2)                      <----------DOF2        <---------ARR14(2)  <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(i2)   <---------ALFIN1    ------>ZmHOX2a(2)  xxxxxxxxxxxxxxxx>smallRNA(i) --DOF2           <---------ANAC58  --------->At4g35610    --------->ARR11(3)<---------ANAC58     --- -->ZmHOX2a(1)<----------DOF2  <---------ANAC46            <---------ARR11(3)<---------ANAC58   <xxxx   tcgagctacttcttctctttgcatggttgagcggcttgagcttccaccttgaatcaagcttgatctttgagcacggcgagcttggcgaatttggcgttca  14104700                                                           --------->ALFIN1                                              --------->ARR14(2)                                              --------->GLK1(2)                                              <---------ARR14(2)                                              <---------ARR11(3)              <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)        <-------PIF5            <xxxxxxxxxxxxxxxxsmallRNA(s)      --------->ARR11(3)           <-----------HVH21   <---------ICU4 <---------ARR14(3)       <---------ATHB12       ------>ZmHOX2a(1) ------>ZmHOX2a(2)                                 <xx --------->ANAC58--------->ANAC46             <-----------ARR10<---------ZAT18                  <---- --------->AtLEC2--------->ANAC58            <------ZmHOX2a(1) --------->ZAT14               <------MYB46(1) --------->ANAC58------->GAMYB========================HOX2a_HOX2a                           <-------- xxxxxxxxxxxxx>smallRNA(fl3)  =========================HOX2a_HOX2a                        <---------- xxxxxxxxxxxxxsmallRNA(se3)  --------->TOE2(3)--------->ARR14(3)                         *TSS<------MYB83 ------>WRKY18(1)--------->ANAC58   <---------YAB1        ------->PIF5               --------->AtLEC2 xxxxxxxxxxxxxxxxxxxsmallRNA(se3)--------->ICU4<------ZmHOX2a(2)                    xxxxxxxxxxxxxxxxx   gtcatgccactcatgtcaaacgcctcaacttcctcattatcaatagaggatcttcttgcccgtggtgaactcttccttcttgaatccatggagattggtg  14104800     ----------->HVH21   <----------DOF2 --------->At4g35610 <---------At4g35610 xxxxxxxxxxxxxxxxxxxxxsmallRNA(se3) -----MYB46(3) --------->ANAC58 -AtMYB61      --------->ANAC58           ---------->DOF2 --CBF     <------ZmHOX2a(1) <---------HSFB2a(2)                <----------DOF2                <----- xxxxxx>smallRNA(i2)         --------->HSFB2a(2)            <----------DOF2                  --------   gtgagctttgacaggacaaacaagaacacttctctaagagctatcaaaggggaagggaatcgctttctttggtgatgaaattttgagcttgaaactgatt  14104900                                                                                <---------ANAC46        =========================HOX2a_HOX2a   --------->YAB1        --------->REM1(2)        <------ZmHOX2a(1)                     --------->ICU4      <---------ANAC58      <---------TOE2(3)                       <---------YAB1      <---------ANAC46  <---------ANAC58                          <---------ICU4        <---------ANAC58  <---------ANAC58                          --------->YAB1     --------->ARR14(2) --------->ATHB12                    ----------->GT1    xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3) ----WOX13(1)                     <----------DOF2   <xxxxxxxxxxxxxxxxxxxxxsmallRNA(i2)          <---- ->ATHB12    ------->TEIL ------>ZmHOX2a(2)--------->ICU4      <---------ARR14(2)       <----------DOF2   gaatgcttgaggatgaacttggaagtgatcgagtgactttggtgaattatgatgaagtgagaacgaattcgtgaagagtttggagtgaaactttgaagct  14105000                                                                                         xxxxxxxxxxxx                                                             ---------->ID1     <------ZmHOX2a(1)                                                       <------MYB83            xxxxxxxxxxxxxxxxxxx>smallRNA(fl3)             xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(i2)      <------MYB46(1)        <---------ANAC46     <-            --------->ARR11(3)    ---------->DOF2    --------->ALFIN1      --------->ALFIN1  <------MYB46(1)     --------->CCA1(2)       --------->ICU4       --------->DAG2         <---------ANAC46<---------MYB46(3) ------DOF2 <---------ARR11(3)  <---------YAB1   ---------->DOF2        <---------MYB46(3)   <------MYB83   ttgtgagagatggagattttgcgaaaatgagatgatgaaagagagagtttcaaaagtgggtttgtcgaattcaatgggtggaggagaatggtgtttggtt  14105100                                                                   ---------->DOF2                                                                <---------ANAC46                      <---------ANAC46                       <---------MYB52(1)                --------->DAG2                              <-------GAMYB --------->ALFIN1         <------ZmHOX2a(1)                                  <---------At4g35610     ---------->DOF2 --------->ATHB12                       --------->At4g35610 xxxxxxxxx>smallRNA(se3)            <---------ANAC46       <---------MYB46(3)  <---------LBD16 ---------DOF2 ---------->DOF2     --------->ALFIN1  <----------DOF2      <---------ZAT6      <------ZmHOX2a(2)   tctttgggaaaggatagaaaagttgattgtaaatggtgaggggcatgggtaatctctttgtccgttgagtaaaggagtgtttggggagcaagttggatca  14105200                                                             --------->ALFIN1                                                       <---------HSFB2a(2)                                                 --------->ARR14(2)                                                 <---------ARR14(2)                                                 --------->GLK1(2)                                                 <-----------ARR10        <---------ANAC58                         <---------ARR11(3)        <---------ANAC58             ---------->DOF2   --------->HSFB2a(2)        <---------ANAC46     <---------ZAT2      --------->ARR11(3)                      <---------ARR14(2)  --------->ARR14(2)         --------->At4g35610<---------CCA1(2)                  --------->ALFIN1  <---------ARR14(2)    <---------YAB1    --------->GLK1(2)  ----------->GT1  --------->MYB52(1)    <   cgaagttatgccttggtcttcgaaatatgagagctcgagtaaagaatcgagtatcttcttgaagtgtgaaatacttcatcaaacggtggagaatacttct  14105300  Previous    Next  AGI:  At1g37063.1    Description:  transposable element gene. transposase-related, weak similarity to Tam3-transposase (Antirrhinum majus) GI:16064, PIR|A39652 Hobo element transposase HFL1 (Drosophila melanogaster) Range:  from: 14104034    to: 14104789    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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