Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                  --------->ANAC58            --------->ARR11(3)                                          <-------MYC3                      <---------AHL20(1)                        ----------->HVH21 ------->MYC3                      --------->AHL20(1)               --------->REM1(1)         <---------O2  ---------->DOF2   --------->AHL20(2) -AHL20(2)     --------->ANAC46  --------->YAB1 --------->ANAC58  <----------ID1           ----------   atttgtctcagacttctacatcatatgtgactgaatcaaaaaaacgtggcaagacataaaagaggtttaagacaaaaaaatattgaaacaaaatagtaga  14052500                                          --------->CCA1(2)                                          --------->GLK1(1)                                         --------->ARR11(3)                                         <---------ARR11(3)                                     ---------->DOF2                      --------->ANAC58                              --------->ANAC58                            --------->ANAC58                              --------->ANAC46                   --------->ANAC58                            <---------AtLEC2                     --------->AtLEC2 ->GT1         --------->YAB1 --------->ANAC58                   --------->ANAC58   aaacataagtgactgaatcaaaaaaacgttgcaagacacaaaagatatcaagtctaatagcttaaacatgcaaaacaagacaatagaagaggtttaagtc  14052600                                                                                      --------->ZAT2                           --------->ANAC58                                           ----------->RAV1(2)                           --------->ANAC58                                           ===============                          --------->DAG2                                              <---------ZAT2                     <---------HSFB2a(2)                 <---------ANAC46             --------->TGA1a                     --------->HSFB2a(2)         ------>NtERF2                   <-----------GT1               <---------CCA1(2)                --------->ANAC58           <---------CCA1(1)             <---------ANAC58                   --------->ANAC58           <---------RVE1(1)             <---------ANAC58                   --------->ANAC46  <---------ALFIN1 <---------ETT(1)          <---------bZIP60(1)    <---------AHL20(2)      <---------ANAC58 --------->ARR11(3)<--------          --------->bZIP60(1)    --------->AHL20(2)      <---------ANAC58 <---------ARR11(3)---------      <---------TOE2(3) ---------->DOF2     <------ZmHOX2a(2)    <---------ZAT14<-----------GT1   taaaaattgatgatgtcgtctctctcgaaaggcaattttttgggcgatcgacgccatttgcttgttctccactggagatttttttccgacctgagatgtt  14052700                            <---------MYB52(1)                           <---------DEAR3(2)                                                 -------                         <---------LBD16                                                      -------                        ------->GAMYB                   --------->ICU4                  --------->TOE2(3)                       --------->ANAC46               --------->MYB111(1)               <-----------HVH21   <---------GLK1(1)   --------->DEAR3(1)             <---------MYB46(3)         <------MYB46(1)   --------->GLK1(1)<XXXXXXXXXXXXXXXXXXXMIR866-3P    <--------P                  <------MYB83-------- ===============================MYC_MYB            --------->YAB1           --------->ANAC55(2) -ARR11(3) --------->HSFB2a(2)               <<<<<<<<<<<<<<<<<LFY       <----------DOF2--------->YAB1 >ARR11(3) <---------HSFB2a(2)               --------->YAB1<---------YAB1  <---------LBD16 --------->WOX13(1)   cgcagaattccttctagagtcttcaacgccggtttttgtctgccaaatgacaatggtagttattcttctcccctctttacgggaggtaatcgtcaaccaa  14052800                                                                                             <-------                                                                                           --------->YAB1                                                                                           <---------ICU4                                                                                          --------->ICU4                                                                                          <---------ATHB12                                                                                          <---------ATHB51                                                                                        --------->WOX13(1)          <---------KAN4(1)                                                            --------->AHL20(2)          --------->KAN4(1)                                                           ------------>CBF  <---------MYB52(1)            --------->YAB1                                        <---------ATHB12 <---------RAP2.6(3)           <---------ATHB12                    ------>MYB46(1)  --------->WOX13(1) <-----------HVH21       <----------DOF2                           ------>MYB83    --------->MYB46(3) <-----------TGA1   <-----------GT1       <----------DOF2          -------->P     ------------>CBF -->AtMYB61        <-----------GT1        <---------DAG2      <-----------GT1     ------>MYB46(1) >GAMYB  <------ZmHOX2a(2) ------------>CBF           <---------ALFIN1            ------>MYB83  *TSS ->MYB46(3)--------->KAN4(2) --------->WOX13(1)      --------->MYB46(3)        --------->MYB46(3)   aaccgtcatggatcattctatttaaccctttcaatcatctattcctttttctctcaccactgttttaccaactcgacaaaaaccaacaatcaattatgag  14052900                         ------>ZmHOX2a(2)                         <-----------------AG                         <-----------------AGL2                         <-----------------AGL3                                                 <----                        <------ZmHOX2a(2)                                                       -----                        --------->CCA1(2)                            <---------GLK1(1)         <-----                       --------->ARR14(3)                    ----------->HVH21          <---------At4g35610                       <---------AGP1                       <-----------HVH21          --------->MYB52(2)                       <---------ARR14(3)                  ------>ZmHOX2a(1)       <---------ANAC58                       <---------ARR14(2)                <---------ANAC58          <---------ANAC58                       --------->AGP1 --------->DEAR3(2) <---------ANAC58      <-----------RAV1(2)                       --------->ARR14(2)              <-----------GT1      ----------->HVH21 <------                       --------->ARR11(3)            <<<<<<<<<CBP60g --------->GLK1(1)--------->SPL7 --YAB1                <---------ARR11(3)            <<<<<<<<<SARD1<------ZmHOX2a(1)<---------SPL7   tgattttctaagaaagtttgtccaagatctgaatttgggaatcgacgatgctccaaatttcctgtcacaggaattcgtctcacaggcgttcgctgttaac  14053000                                                                                                <----                                                                                               ------                                                                                               <-----                                                                                              <------                                                                                              <------                                                                                              <------                               --------->LBD16                                            <---------ANAC58                              --------->ANAC46        <---------ATHB12                    <---------ANAC58                              --------->LBD16       --------->WOX13(1)                 --------->ARR14(2)            <-----------HVH21--------->LBD16     --------->TOE2(3)                     <---------GLK1(2)            <-----------TGA1 <---------HSFB2a(2) <-------GAMYB                         <---------ARR14(2)    --------->ZAT6          <---------LBD16     ----------->GT1                       <------NtERF2<- --------MYB.PH3(1)      <---------ARR14(2)------>MYB46(1)                          <---------ANAC46 ---->MYB46(3)  --------->ANAC58         --------->TOE2(2)                          <---------ANAC58 ----At5g28300  --------->ANAC58         --------->TOE1(2)                          <---------ANAC58 -----GT1  --------->YAB1--------->ARR14(2)------>MYB83 --------->WOX13(1)         <---------LBD16<--   cgcttctcactaatcgtcacaccagtgaatccccgaaaaaaaacctacgagcgttaatcagtcaaatgcctagagtttagggactggcggattcttgcgt  14053100      --------->ATHB12    --------->GLK1(2)                                                        --------->WOX13(1)    <---------ARR14(2)                                                  --------->ALFIN1    --------->ARR14(2)                                                <---------ANAC46 -----MYB52(1)                                                        <---------O2 --------------->WRI1                                                 --------->TGA1a --GAMYB                                                           ----------->HVH21 ---ANAC58                                              ------->TEIL  --------->O2 ---ANAC46                                           <---------ATHB12 <---------bZIP60(2) ---ANAC58              <-------TEIL               --------->WOX13(1) <---------TGA1a             --- --------ANAC46     --------->DAG2              ------->TEIL     ------>ZmHOX2a(1)  --------->ATHB12 -------MYB46(3)  ---------->DOF2          --------->At4g35610  --------->TOE1(2)  <---------ATHB12 <   tgggcgaatcgttggcaatggaaaggtgcaattcaagttccaaacagatgaatcaatgaacttggtcctgcgacgtggtcattcaatgactggatgttgt  14053200             --------->At4g35610                    <---------LBD16    <---------ATHB12                            <----------DOF2       --------->GLK1(1)  --------->WOX13(1)                     <---------ARR11(3)           <---------GLK1(1)   --------->MYB46(3) ------>WOX13(1)                         --------->ARR11(3)        <---------TOE1(2) --------->TOE2(3) ---------ATHB12                  --------->At4g35610      --------->AHL20(2)    <----------DOF2   caatcaatcgatggtacctgaatatcacagagaatgagatgaagataattcttttctgggtttaaatccaaggtatccctcttcttttcttaaccaatgc  14053300          --------->At4g35610          <-------GAMYB               --------->ARR11(3)          <---------At4g35610    <---------REM1(1)          <---------ZAT2      <-----------RAV1(1)         <---------MYB46(3) --------->GLK1(1)                                    <---------ZAT6         --------->MYB55(2) <---------GLK1(1)                                   <---------TOE2(3)       <---------ZAT18      --------->CCA1(2)                              --------->ATHB12 <--------      ------------>AtMYB77 --------->ARR14(2)                             <-------TEIL      <--------  <---------ANAC58         <---------ARR14(2)                          <------ZmHOX2a(1)    <--------  <---------ANAC58        <------ZmHOX2a(1)     <---------YAB1 <---------ATHB12 <---------TOE1(3)   aatggctagggcagttggaaacagactaggatatgttgtagatgttgattttgatgagaacacaaatcaactaggattcattagggttaagttggcttga  14053400  Previous    Next  AGI:  At1g37030.1    Description:  transposable element gene. non-LTR retrotransposon family (LINE), has a 5.1e-17 P-value blast match to GB:NP_038605 L1 repeat, Tf subfamily, member 30 (LINE-element) (Mus musculus) Range:  from: 14052896    to: 14058759    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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