Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                   <---------ICU4                                                                 --------->YAB1                                                                <---------YAB1                  <----                                                               --------->AHL20(2)    <xxxxxxxxxxxxxxx                                                               <---------AHL20(2) <---------ALFIN1                                                              --------->YAB1     --------->ANAC46----     <---------TOE2(3)                --------->ALFIN1       <---------YAB1<---------DAG2 --------->ARR11(3) --------MYB52(1)                  --------->DAG2           --------->AHL20(2) <-----------GT1 ------ -------RAP2.6(3)                ---------->DOF2      <-----------GT1      <----------DOF2<---------ARR11(3)   cggtattgatgttgaagggattgcatttacagaatgaaaggtggagagcgtttttttaacaatattataatcactcacttttcaccacataatatcatcc  13999800                                    <---------ALFIN1                                   -------->P                           <---------ICU4                           --------->YAB1                          <---------YAB1                         --------->AHL20(2)                      <-----------GT1                        --------->YAB1 <----------DOF2   --------->LBD16                       --------->ICU4  <---------DAG2  <---------LBD16 <---------At4g35610<------NtERF2  ------>MYB46(1)    --------->MYB52(1)          <----------DOF2 -----LBD16        --------->LBD16 ------>MYB83      --------->ARR14(2)          <---------DAG2 xxxxxxxxsmallRNA(fl3) <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(i2)  --------->ARR11(3)  <----------DOF2 -->ZmHOX2a(1)    <---------ANAC46----------->RAV1(1)<---------ARR14(2) --------->YAB1 ----->RAV1(2)   <---------LBD16 --------->AtMYB61  --------->MYB46(3) <---------ATHB12   tggaggtgatttcgaacatggcggaattataatcaccaacacttttgcaatccaagaaccggagatttagccattcatgtctgccttttggcaaaatcac  13999900                                                                                                  ---                                                                                               <-----                                                                                               <-----                                                                                               <-----                                      <------ZmHOX2a(2)                                        <-----                                      --------->CCA1(2)                                       <------                                     <---------ARR11(3)                                   --------->ATHB12                                     --------->ARR14(2)                                  <---------YAB1                                     <---------ARR14(2)                                  --------->ICU4                            <---------WOX13(1)                                  <---------YAB1-------                       --------->ANAC55(2)    <---------ARR11(3)               <-----------HVH21<----                --------->GLK1(2)    --------->AGP1                       <---------AHL20(2)  -------         ------>ZmHOX2a(2)--------->ATHB12    --------->ARR11(3)         <---------AHL20(2)   <------     <---------YAB1<----------DOF2   --------->ARR11(3)  <---------YAB1  --------->AHL20(2) <--------   atatgttatgatcgaaacaatctttaagtgattgccatagatccacatgatattctcttatgatgtattcattttttaaattgtcatcgagatgattgcg  14000000     <---------YAB1    --------->ARR11(3)    <---------ARR11(3) ------>SPL7 ----ANAC58 ----ANAC55(2)                                     <-----------RAV1(1) ----ANAC46                                      <---------At4g35610 ----ANAC58 <----------DOF2                     ------->TEIL ---------AtSPL3                    <---------ANAC58                                     xxxxxxxxxxxx -------->AtSPL8                    <---------ANAC58                                 ------->TEIL -----SPL7 <---------ANAC58         <---------ANAC46 <-----------RAV1(1)           <-------TEIL -------->AtSPL3    <---------AtMYB61         <-------TEIL                  ------>ZmHOX2a(2) ---------AtSPL8  <----------DOF2  ---------->ID1--------->At4g35610      <---------ARR11(3)     ---- -WOX13(1) <---------ANAC58      <-----------RAV1(1) --------->ALFIN1     --------->ARR11(3)---------   tacgaatatcatggctttagctttggtctcatcttatgtcgttttagatgcatctgtggtgctcagaaacctatttgatcttagatgcatcttaacatca  14000100                                                                                                 <---                                                                                                 <---                                                                                                 ----                                                                                                 ----                                                                                                <----                            <---------AHL20(2)                                                  -----                           <---------AHL20(1)                                             --------->WOX13(1)                           --------->AHL20(1)                                            <---------ICU4                           --------->ARR11(3)                                           <---------YAB1                           <---------ARR11(3)                      --------->ICU4       <---------ATHB12                   <-----------GT1       ------->GAMYB             <---------YAB1     --------->YAB1               <---------YAB1           --------->ANAC58      ----------->HVH21    --------->YAB1----            <---------AHL20(2)          --------->ANAC58   <---------ARR14(2)    <---------AHL20(2)            --------->AHL20(2)        <xxxxxxxxxxxxxxxxxxxxsmallRNA(s2)*TSS      --------->AHL20(2)     --------->bZIP60(2) <---------ARR11(3)                <---------GLK1(2)   ----------->TBP  <---- xxxxxxxxxxx>smallRNA(si3)--------->CCA1(2)                --------->ARR14(2)  <---------AHL20(2)---- ----->At4g35610<---------ICU4       xxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)     ----------->TBP--------- >YAB1<-----------HVH21  --------->ARR14(2)       xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3) --------->ICU4   tatgcccatgtcatataatttttgccagatatatttagggcaacgacatcgaatttagccagatttgacatgattatctatataaaaataatcattcaat  14000200       <-----------TBP     --------------->AGL15     <---------------AGL15    <-----------------AGL3    <-----------------AGL2 -----HAHB4 ------ICU4 ---->ATHB1 ----->ATHB51 -----ATHB12                         --------->ATHB12 ---->ICU4                        --------->WOX13(1) ----->AHL20(2)          ----------->GT1         <------ZmHOX2a(1) -----ATHB51        ---------->DOF2  --------->YAB1                                               --- ----->YAB1       <---------AHL20(2)<---------ATHB12<------ZmHOX2a(1)                ------->TEIL <-- --->CBF   <---------TOE2(3)---------->DOF2    <---------TOE2(3)           --------->YAB1    <-------   tattaagctatttatggtattttaaagaagtaaagtctatcatttgattaaggaggagacatagtctcatactccaaaaataacatgtatgttattttat  14000300        --------->AHL20(2)        <---------AHL20(2)       --------->AHL20(2)   <---------AHL20(2)   <---------AHL20(1)                                       <---------AHL20(2)   --------->AHL20(1)                                      --------->AHL20(2)   --------->AHL20(2)                                      <---------AHL20(2)  <---------AHL20(2)        <---------AHL20(2)<---------AHL20(1)  --------->AHL20(2)        --------->AHL20(2)<---------ARR11(3)              <xxxxxxxxxxxxxxxxxxxxxx ------>AHL20(2)     --------->YAB1           --------->AHL20(1)             <-----------GT1   ------ -------AHL20(2)   <-----------GT1            --------->ARR11(3)       ------>ZmHOX2a(2)    --------- --AHL20(2)      --------->AHL20(2)        --------->AHL20(2)      ------>ZmHOX2a(2)    ---------->DOF2   ataaataaattaaaatcaatataacataatttaaatgttacttcaaaaaatatttgaacaaataaatgatcgatctgttataccatcactcaaagtgttg  14000400                              <---------YAB1                             <---------AHL20(1)                             --------->AHL20(1)                             <---------AHL20(2)                            --------->AHL20(2)                            --------->YAB1                           <---------YAB1                        --------->AHL20(2)                     --------->AHL20(2)                     --------->ANAC55(1)                     <---------AHL20(2)                     --------->ANAC58            --------->GLK1(2)                     --------->AHL20(1)                     --------->ANAC55(2)        <---------GLK1(2)                     <---------AHL20(1)                     <---------ANAC55(2)      ----------->ARR10       --------->ANAC58 <---------AHL20(2)   <---------AHL20(2)                  ----------->GT1       --------->ANAC58 <---------YAB1     <---------AHL20(2)                  <---------ZAT14 xsmallRNA(i2)       <---------ARR11(3)    --------->AHL20(2)                  --------->ZAT14 ----->GT1           --------->ARR11(3)  <---------AHL20(2) --------->ANAC58   --------->ZAT18  <---- >ALFIN1            --------->AHL20(2)   --------->AHL20(2)<-----------------------TaNAC69(2)   <----   taaaatagaacgcataaacaaaatatattattatatttgatatatatatatatgaagggaagacgtaagagaaatggagagtgaagtaagattcttcact  14000500                              <---------AHL20(2)                             <---------AHL20(1)                             --------->AHL20(1)                             <---------ARR11(3)                             --------->ARR11(3)                    ----------->RAV1(1)               <---------AHL20(2)       ----------->GT1               --------->AHL20(2)    <------ZmHOX2a(1)                         ----------->GT1        <---------AHL20(2)  --------->CCA1(2)                                --------->MYB52(1) ------DOF2 --------->YAB1 <---------ARR11(3)                     ---------->DOF2       <-----------GT1 -----DAG2 <---------YAB1  --------->ARR11(3)         <------ZmHOX2a(1) --------->AHL20(2)         <-   ttttctacattttataataaaacaacatagatatatttaggagagaaaaacttggaggataagtgcctcaaagaaaaaataagggaaatttgactctata  14000600             --------->AHL20(2)            <---------------AGL15                               <---------ANAC46     <---------AHL20(2)                           <---------CCA1(1)                             -----    --------->AHL20(2)                            <---------RVE1(1)              --------->ALFIN1   <    <---------AHL20(2)    --------->MYB52(1)     --------->ARR11(3)        xxxxxxxxxxxxxxxx>smallRNA(i) ------>MYB46(1)        <---------MYB52(2)       <---------ARR11(3)     ---------->DOF2         <---- ------>MYB83<---------AHL20(2)                  <---------ARR14(2)     <---------ICU4         <----- --------MYB59     <---------TOE2(3)  ---------->DOF2 <-----------GT1  --------->ICU4       <--------   accaaattttttttataaattaagaaactaacacatcaaaaaaaggaagaagatattatctatattttgtgtaataaagacaggtttggccttggtgtga  14000700  Previous    Next  AGI:  At1g36936.1    Description:  transposable element gene. pseudogene, similar to Putative copia-type polyprotein, blastp match of 43% identity and 2.1e-28 P-value to GP|15209144|gb|AAK91877.1|AC091665_3|AC091665 Putative copia-type polyprotein {Oryza sativa} Range:  from: 13999200    to: 14000171    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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