Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                            <----------DOF2   <--------                                                                         <---------DAG2    <-------TEIL                ---------->DOF2                                        ---------->ID1    --------->ARR14(2) <---------ALFIN1                                                     <---------WRKY18(1)<---------ARR14(2) -->GAMYB     <---------AHL20(2)--------->ARR11(3)            ---------->DOF2      --------->ANAC46 ----GT1------>ZmHOX2a(1)   ---------->DOF2      --------->At4g35610 ----------->HVH21   <---------GLK1(2)   gcccaacttcctgtattaaaaagacatattcaaagttattgtttcattctctgcttaagagaaacaaagacttgaccttttcaatacacaagattcacta  13901600                --------->YAB1        ------>ZmHOX2a(2)        =======================HOX2a_HOX2a       --------->CCA1(2)               --------->GLK1(2)       <------ZmHOX2a(2)   <---------ARR11(3)      <---------ARR11(3)   --------->ARR11(3)      --------->ARR11(3)  <---------CCA1(2)      --------->AGP1    <---------------AGL15      <---------AGP1    ------>ZmHOX2a(1)                                                      ------     --------->RVE1(1) --------->TOE2(3)                         ---------->DOF2             --------  ---------->DOF2  --------->YAB1 ---------->DOF2           ----------->GT1    <-----------GT1 ------ ---GT1========================HOX2a_HOX2a                <---------ZAT14   <---------ICU4   <-------   attcaaaagatctaacaacaataatcctaaatcttgaaaagaatcaagaacccataagagaacagagaaaagtttcaatatttacaatctgaaaacctaa  13901700                                                                      --------->ANAC58                                                                     --------->GLK1(1) --------->At4g35610                       --------->YAB1            --------->WOX13(1) <---------At4g35610                      <---------ATHB12      --------->ALFIN1 >MYB46(1)                  <---------AHL20(2)              --------->YAB1           ---------->DOF2 ->TOE2(3)              <----------DOF2  ------>MYB83    --------->YAB1  --------->TOE2(3) >MYB83             <---------CCA1(2)    ------>MYB46(1)--------->ICU4--------->ANAC58 --MYB59         <---------ATHB12       --------->WOX13(1)  <---------ICU4  --------->AHL20(2)     <-   ttcagcataaacgaatcaaatcatctcttttttattcaaaaccaatcaaatctaagaaataatcatgtgggcaatccataaaatcgataaagaaactaaa  13901800                          ---------->DOF2                                        <---------TOE1(1)                       --------->YAB1                               <------ZmHOX2a(1)                       --------->AHL20(2)                          ----------->GT1                    --------->WOX13(1)            <---------At4g35610        ----------->HVH21          <------ZmHOX2a(2)                       --------->At4g35610<---------KAN4(2) ----------GT1   --------->GLK1(2)    <----------DOF2    ---------->DOF2--------->GLK1(2)   >>>>>>>>>TBF1   tttacaaatcggatcaaagaatcaattaaaaaggaagaagctttaccttgtaagatgagaaaagaagggaggataatctctgaacgaggttgaagaagaa  13901900                                                                          --------->AHL20(2)                                                                      <---------AHL20(2)         <------NtERF2        <---------YAB1                         --------->ARR11(3)        <---------RAP2.3(1) <---------ICU4                --------->ARR11(3)       <---------DEAR3(1)   --------->YAB1            --------->CCA1(2)   <---------AHL20(2)        -       <---------ANAC46----------->GT1           ---------->DOF2     <---------ARR11(3)            <-      <---------At4g35610  --------->ICU4    --------->ANAC58        <---------AHL20(1)          ----  --------->MYB52(2)--------->CCA1(2)        --------->ANAC58 <---------ANAC46                  <----   acgtttgtagcggcgataagagagatggaataatgagagaaacagcgaagcaaaagagatgattttgtggatatatttatatataagaaggaagagaagg  13902000                                                                                     <---------AHL20(1)                                                                                     <---------AHL20(2)                                                                                     --------->AHL20(2)                                                                                  --------->AHL20(1)                                                                                 --------->YAB1                                                                                 --------->AHL20(2)                                                                                 <---------ICU4                                                                                 -------->ATHB1                                                                                 <---------AHL20(2)                                                                                 <--------HAHB4                                                                                 --------->ATHB51                                                 <----------DOF2                <---------ATHB12                                                 ------>ZmHOX2a(1)              --------->ICU4                                                --------------->AGL15           <---------ATHB51     <---------At4g35610                   <-------TEIL                      ------------>ATHB5     --------->At4g35610                <---------MYB46(3)                  ------------>CBF  <------ZmHOX2a(1)               --------->ATHB12                     <---------ANAC55(1)  --------->ATERF1(1)          --------->ANAC55(2)                     <---------ANAC46 -------->ALFIN1               <---------ANAC46 <---------------AGL15  --------->ANAC55(2)  <-------- -----ZmHOX2a(1)               <---------ANAC58<-----------------AGL1  <---------ANAC58    <---------YAB1 ----->ALFIN1                  <---------ANAC55(2)                     <---------ANAC58 <---------YAB1 --ZmHOX2a(1)                  <---------ANAC58----------------->AGL1  <---------ANAC55(2)<---------AHL20(2)   aggaggaggctgagaaactagaaatgagaagacgcgtgattgtggttcatccttttagggcaaactcatcgtttcgtgtccaattattttatttttattt  13902100                                                                                         <---------AHL20(2)                                                                                  <-------GAMYB                                                                                 <---------MYB46(3)                                                                                 <------MYB46(1)               <------------CBF                                                  <---------DEAR3(2)              <---------AHL20(2)                                          <---------AtLEC2         <---------AHL20(2)                               --------->HSFB2a(2)   <---------DEAR3(1)       <----------DOF2                              ---------->DOF2  ------->TEIL<------MYB83 <---------MYB52(1)    ---------->DOF2     ---------->DOF2<---------HSFB2a(2)   <---------DREB2C(2) -AHL20(2)   <---------AHL20(2)         ----------->RAV1(1)  ---------->DOF2  <-----------HVH21   tttgttagtcttttatttattgtataaaagaaaaaaatcagacaacaaaggaagaaaagtctagaaagatgaatttgcaaggtcggttgatataaatcga  13902200                                                                                            <--------                                                                                            ---------                                                           <----------DOF2                  ---------                                                       ------->TEIL                         <--------                                                       --------->GLK1(2)                    ---------         ----------->GT1                               <---------ARR14(2)                   <--------      --------->YAB1                                --------->ANAC46                       --------->AHL20(2)     <---------YAB1                                 --------->ANAC58                    <---------AHL20(2)    --------->AHL20(1)                              --------->ANAC58                   --------->AHL20(2)    --------->AHL20(2)                      <---------AHL20(2)                      ----------->GT1    <---------AHL20(2)                      --------->AHL20(2)                   ---------->DOF2   --------->YAB1                        ----------->GT1   ------>ZmHOX2a(1)<---------------AGL15  --------->ICU4     ------->TEIL       --------->ICU4 --------->ARR14(2)   --------------->AGL15   tgaaattataatagtgaaacatgaaactttgttcatctagtaatagttaaatacacgaatcctttctagtcaagttaactaaaaaaagattaaatatatt  13902300                                           <---------YAB1                                          <---------AHL20(2)                                          --------->AHL20(2)                                         --------->YAB1                                    --------->AHL20(2)                                    <---------AHL20(2)                                <---------AHL20(2)                               <---------AHL20(1)     --------->ANAC58          --------->AHL20(1)     --------->ANAC58          --------->AHL20(2)                                   --------->ATHB51 -ARR11(3)                     <---------AHL20(2)                               <---------AHL20(2) >AHL20(1)             --------->YAB1<---------AHL20(2)                         <---------YAB1 >ARR11(3)    <---------DAG2   --------->ARR11(3)                 --------->YAB1--------->AHL20(2) -AHL20(2)    <----------DOF2  <---------ARR11(3)        ------>ZmHOX2a(2)   <----------DOF2        - >AHL20(2) <---------ARR11(3) --------->AHL20(2)      --------->ATHB12  <---------AHL20(2)    <------ -AHL20(1)<---------ATHB12--------->AHL20(2)       <---------AtLEC2  <---------ICU4<---------YAB1<---   agtcgaaacccaataacttttctatttataaaatatattttaattttaatagtgcatgatcgatgtaatcatatttattctttttattattgtattttac  13902400                                         <---------YAB1                                       <--------ATHB1                                       --------->YAB1                                       <---------ICU4                                       <---------AHL20(1)                                       --------->AHL20(2)                                       <---------AHL20(2)                                      <---------YAB1                                      --------->ICU4                                    --------->YAB1       --------->AHL20(1)           <---------ICU4       <---------AHL20(1)          --------->ICU4       <---------AHL20(2)          <---------YAB1          --------->YAB1       --------->AHL20(2)        --------->YAB1           ---------->ID1          ---------->ID1       --------->ARR11(3)       <---------YAB1        <----------DOF2      <---------AHL20(2)       <---------ARR11(3)       --------->ICU4   <------MYB46(1)           --------->AHL20(2) ---------->GT1               <---------ICU4     <------MYB83             --------->AHL20(2) -----GT1                     --------->YAB1 <-----------RAV1(1) <---------AHL20(2) -------DOF2       --------->YAB1<---------ICU4 <---------AtMYB61--------->AHL20(2)   ttttgttaatatatttctaaatagtaatctaataataataataatttttgttggtgttttatcgtatttttttaaaaaaaatttgtagttattttttgca  13902500  Previous    Next  AGI:  At1g36730.1    Description:  eukaryotic translation initiation factor 5, putative / eIF-5, putative. Identical to Probable eukaryotic translation initiation factor 5-1 [Arabidopsis Thaliana] (GB:Q9C8F1;GB:Q93ZX3); similar to eukaryotic translation initiation factor 5, putative / eIF-5, putative [Arabidopsis thaliana] (TAIR:AT1G77840.1); similar to hypothetical protein [Vitis vinifera] (GB:CAN64883.1); contains InterPro domain Armadillo-type fold; (InterPro:IPR016024); contains InterPro domain Translation initiation factor IF2/IF5, N-terminal; (InterPro:IPR016189); contains InterPro domain Translation initiation factor IF2/IF5; (InterPro:IPR002735); contains InterPro dom Range:  from: 13899422    to: 13902043    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At1g36732.1    Description:  CPuORF19 (Conserved peptide upstream open reading frame 19) Range:  from: 13899422    to: 13902043    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
	printer-friendly version