Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                                        <xxxxxxxxxxxxxx                                                                                      xxxxxxxxxxxxxxx                                                                                    <xxxxxxxxxxxxxxxxsmallRNA(i)                                                                                    xxxxxxxxxxxxxxxx>smallRNA(i)                                                                                   <xxxxxxxxxxxxxxxxsmallRNA(i)                                                                                   <xxxxxxxxxxxxxxxxx                                                                                  xxxxxxxxxxxxxxxx>smallRNA(i)                                                                                  xxxxxxxxxxxxxxxx>smallRNA(s)                                                                                  <xxxxxxxxxxxxxxxxxx                                                                                  xxxxxxxxxxxxxxxxxx>smallRNA(fl3)                                                                                 <xxxxxxxxxxxxxxxxxxx                                                                                 xxxxxxxxxxxxxxxx>smallRNA(i)                                                                                <---------ANAC58                                                                             xxxxxxxxxxxxxxxx>smallRNA(i)                                                                             xxxxxxxxxxxxxxxx>smallRNA(s)                                                                           <---------AtLEC2                                                                           <---------ANAC58                                                                       xxxxxxxxxxxxxxxx>smallRNA(i)                                                                      xxxxxxxxxxxxxxxx>smallRNA(i)                                                              <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)                                                         <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)                                                        xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)                                                        xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)                                              <------ZmHOX2a(1)       <xxxxxxxxxxxxxxxxsmallRNA(s)                                        xxxxxxxxxxxxxxxx>smallRNA(i) <---------MYB52(1)                                    <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)  <---------ANAC46                                    <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)  <---------ANAC58         <                          <---------MYB52(1)xxxxxxxxxxxxxxxxxxxxxx>smallRNA(i2) <---------ANAC58   xx                   <------------------------ANAC81      <---------GLK1(1) --------->ATHB12      <xxxx               -------->ATHB1      <xxxxxxxxxxxxxxxxxxxxxxxxsmallRNA(i2)<xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)               --------->YAB1    <---------AtLEC2 <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)  xxxxxxxxxxxx               --------->ATHB51  <---------ANAC58 <-------GAMYB      <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)              <---------YAB1     <---------ANAC58<---------ZAT6      <---------YAB1<---------WRKY18(1)   tgattttagtgattctattattgtttctgttttttgcatgttcgcttaggactgttagaaaccccaaaactgttattgcttggcttgacttagtgacttc  13796300                                                              <---------YAB1                                                          ------->GAMYB          <---------At4g35610                            xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)      xxxxxxxxxxxxxxxx>smallRNA(s)                      xxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)     <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)               xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)   xxxxxxxxxxxxxxxx>smallRNA(i)                         xxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3) xxxxxxxxsmallRNA(si3)                                xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3) xxxxxxx>smallRNA(fl3)                     --------->TOE1(3)xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3) xxxxxxsmallRNA(se3)                     <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3) xxxxxsmallRNA(fl3)                      <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3) xxxxsmallRNA(le3)                     <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3) xxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)<xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)      <-------TEIL xxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3) <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3) <---------TOE2(3) xxxxxxxxxxxxxxxxxxxsmallRNA(i2)<xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)  <----------DOF2              < xxxx>smallRNA(i) <---------AtLEC2 <---------WOX13(1)xxxxxxxxxxxxxxxxxxxx>smallRNA(se3)            --   tgatcacatctcatctgtttgcatcacactcatttggattgacaaccttcagtactacaacgacatgatagtgctttaggttcaattgactgaaaaacct  13796400                          ---------->DOF2                         --------->LBD16                   <---------ALFIN1                  <---------ZAT14                  <---------ZAT18                  --------->ZAT18                  --------->ZAT14   <XXXXXXXXXXXXXXXXXXXXMIR845A                                                                    --  --------->YAB1<---------ZAT14                                           --------->CCA1(2)        <- <---------YAB1 <---------ZAT18                  --------->YAB1         <<<<<<<<<RAP2.2           --- XXXXXXXXXXXXXXXXXXXXXXXMIR829.1                <---------ATHB12    <----------DOF2    <-----------HVH21 ------->YAB1   --------->ZAT14            --------->ZAT6   <----------DOF2         <---------MYB52(1)   attatcatgtggtatcagagcacactccgaaagttgagttctctatctctatcattttgtgtcttttcatctttagatatgtgtccgtctgtcaccttga  13796500                      --------->ZAT18                     <---------ANAC46                     <---------ANAC58                     <---------ANAC58                 <---------ANAC58                 <---------ANAC58            <---------AHL20(2)            --------->ATHB51            --------->ATHB12            <---------ICU4            --------->AHL20(2)                   --------->ANAC55(2)           --------->ICU4                        <---------ANAC55(2)           <---------YAB1                        <---------ANAC46         <---------ICU4                         <---------LBD16      --------->ANAC55(2)                     ----------->HVH21        --------->AHL20(1)    <-----------GT1 <-------TEIL             <-----------HVH21         <---------AHL20(2) ------->AHL20(2)<------MYB46(1)            ------->GAMYB  ---------->DOF2 ----------->GT1 --------AHL20(2)<------MYB83              <------------AtMYB77        --------->ARR11(3) ------>AHL20(2)<-----------RAV1(1)       --------->At4g35610          <---------AHL20(1)   tttaatttacataattatttggtgcgtgctaaaatttcgaaatcaactgtcacgggttcgaaaaagagtctaatattttgtaaaattgtttctgaaattt  13796600                                                                               <---------ANAC58                                                                               <---------ANAC58                   <-----------GT1                 <---------TOE2(3)           <---------ANAC46               --------->ICU4                --------->ICU4                    <---------ANAC55(1)          --------->YAB1                   --------->YAB1              ----------->GT1         <---------YAB1         ----------->GT1 --------->ICU4    ----------->HVH21             -----    --------->HSFB2a(1) --------->At4g35610----------->GT1      <---------At4g35610         ---------    <---------HSFB2a(1) <---------At4g35610<---------ANAC46     --------->At4g35610  --------->MYB52(2)   ttgggaacgttttgataatttttagcatctgaacaagtgaaactgtcgtaattagggttctatggcatctgaagggttatttcgtgtttgtttcaaaaga  13796700                                                                                    ------->GAMYB                                                                                <----------ID1                                                         <------ZmHOX2a(1) --------->YAB1                                               --------->GLK1(2)       <---------MYB52(2)      <-----------RAV1(1)                      <---------ARR14(2)    ----------->RAV1(1)<----------DOF2     <---------ANAC46             ---------->DOF2     <------ZmHOX2a(1)--------->MYB46(3)           x ---->ARR11(3)            <----------DOF2      --------->ARR14(2) --------->ANAC58 --------->MYB46(3) ->DOF2          <-----------RAV1(1)       *TSS------->TEIL       --------->ANAC58 <---------MYB52(2)   actagttactggtgttgttttgttgtctcttttgcagaaagaatggctgaatctgaggaggaagagactagcaacaatcgaaacaacaaacttttggtag  13796800                        ------>MYB46(1)                        --------->MYB52(1)                        ------>MYB83                      --------->AtMYB61                      <---------MYB111(2)                      <---------MYB46(2)                     --------->ANAC58               <---------WOX13(1) <---------DAG2             --------->ATHB12     <----------DOF2             -------->HAHB4      <---------ANAC58            --------->ICU4       <---------ANAC58                 --------->ALFIN1               <---  <----------DOF2    --------->ANAC58            <-------TEIL    --------->ALFIN1 ------>ZmHOX2a(1) xxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)      ---------->DOF2     <---------ZAT6     <---------HSFB2a(2)   aagcctttgagaaaatgatggacaccaaactgaatgcttttcgccaaaagtttcatgagaaactagagttggggcagactcgtcctggagaacaaatgag  13796900                                                                                     ----------->RAV1(1)                                                                                   <------NtERF2                                                                            ---------->DOF2                                                                           <---------WRKY45                                                               --------->At4g35610 --------->ATERF1(1)                                    ========================HOX2a_HOX2a    <---------WRKY12                           ------->TEIL                        <---------At4g35610<---------ATERF1(1)                        <---------REM1(1)                   <XXXXXXXXXXXXXXXXXXXXMIR830      <-------                      --------->CCA1(2)                 <---------ALFIN1   <---------WRKY38(1)                 ---------->DOF2    <------ZmHOX2a(2)<------ZmHOX2a(1)  --------->YAB1<------NtERF2 ------ZAT6 <xxxxxxxxxxxxxxxxsmallRNA(i)          <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)      <-------   agttaatgagccgcttgagcaaagagatgaagctacagatcagtactatggcataggagcacttcatctcacaatagtcaaaggaggcaccatagacgtg  13797000                      --------->ANAC58                                              <---------ANAC58                      --------->ANAC58                                              <---------ANAC58                    <---------AtLEC2                                          <---------HSFB2a(2)               <----------DOF2                                                <-----------RAV1(2)              ------>ZmHOX2a(2)                          <---------ALFIN1    ------>ZmHOX2a(2)             <---------RVE1(1)               <xxxxxxxxxxxxxxxxxxxxxsmallRNA(se3) <---------GLK1(2)             <------ZmHOX2a(2)              --------->TOE2(3)            <---------KAN4(1)            --------->AGP1 --------->GLK1(2)--------->TOE1(3)            --------->KAN4(1)            <---------ARR11(3)            <---------TOE1(3)     --------->AtLEC2<---------At4g35610 --ANAC58   --------->ARR11(3)      --------->ARR11(3)   --------->AtMYB61 --------->ARR11(3)       - --ANAC58  <---------GLK1(1)        <---------ARR11(3)<-----------GT1   <---------KAN4(2)        <---   ctagagaaggtagagatcttttgcaagacaatcttggaggtcttaagcttaaaattccaccattccatggaaagaatgatccagatgcttatttggaatg  13797100                                                                                               <-----                                                                                               <-----                                                                                               <-----                                                                                              -------                                                                                              -------                                                                                              <------                                    --------->REM1(1)                                  <----------DOF2                               --------->ZAT6                              <---------AHL20(2) -------          <---------AHL20(2)--------->REM1(1)          ----------->ARR10  --------->AHL20(2)  <------ --------->DOF2          --------->TOE2(3)  <------ZmHOX2a(2)   <---------At4g35610   xxxxxxxxxxxxxxx -------ID1              --------->TOE1(3) <---------ARR11(3) <---------ANAC46<---------YAB1  -------   ggaaaagaatattgaattagttttcaaccttcaacactacatcgagatcaatagggtaagagttgctgctactgaattttatgactatgctttgagttgg  13797200  Previous    Next  AGI:  At1g36550.1    Description:  transposable element gene. similar to retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa (japonica cultivar-group)] (GB:ABA98367.2); contains InterPro domain Retrotransposon gag protein; (InterPro:IPR005162) Range:  from: 13796743    to: 13798497    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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