Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                                                 <-----                                                                       ------>ZmHOX2a(2)       ------                                                                     <---------ARR11(3)        <-----                                                   <---------ARR11(3)--------->ARR11(3)       -------                                               <---------ANAC58    <---------YAB1             -------                                             <---------YAB1      --------->YAB1               <------     ----------->GT1           <----------DOF2 <---------ANAC58 <---------YAB1     --------->At4g35610 ->MYB46(3)    <---------TOE1(2)          --------->ICU4 ----------->GT1<----------DOF2    --------->YAB1   tgcagacttgtgaatcgaatgtttagatagtttcttttatagacattatgcttgatattttgtaatattatgatcttttatagacatctccaaaaattat  13769600                         --------->YAB1 ----AHL20(2)           <---------ATHB12 --->AHL20(1)         --------->GLK1(1)                                                             - ----AHL20(1)      --------->LBD16                                      --------->YAB1          ----- -->YAB1          <---------HSFB2a(2)         --------->YAB1      --------->ANAC46             <xxxxx -->AHL20(2)      --------->HSFB2a(2)        --------->ICU4       --------->ANAC58    <---------TOE1(3) ---AHL20(2)    ------>ZmHOX2a(1)            <---------ATHB12     --------->ANAC58    <---------TOE2(3)   attgtttgactaaacatcctccagaaatcatgttgtatgactaaacaatgatgtgagagtcgaaactcacacaatcgaaattgtatttagggtttcttca  13769700         xxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)        <----------DOF2       ------>ZmHOX2a(2)      <------ZmHOX2a(2)     --------->ARR11(3)     ------->TEIL--------->GLK1(2)                                                 --------->YAB1     <---------ARR14(2)                                                           --------->ICU4     <-----------ARR10                                                          ---------->DOF2     <---------ARR11(3)      --------->MYB52(1)                             <---------TOE2(3)     --------->ARR14(2)      ----------->RAV1(1)     <---------DEAR3(1)--------->ATHB51    <---------ARR14(1)<xxxxxxxxxxxxxxxxsmallRNA(i)  <---------ORA47(1) --------->ATHB12 -------->MYB52(1)    ---------->DOF2             <---------SPL7      <---------YAB1          ------>ZmHOX2a(2) ----->DOF2     <---------GLK1(2) <---------GLK1(2) --------->SPL7 <---------AHL20(2) --------->ATHB12 xxxxxxxxxxxxxxxxxxsmallRNA(si3)------->GAMYB   <---------LBD16    --------->AHL20(2)<---------YAB1   aagaacggatctttgtgagattctcaaagaacaacagaattgttgattactacggacggtgttcttgattttattattgagataaagatgatttgatcgt  13769800                                                                                       ---------->ID1                                                               <---------TOE2(3)   <---------ANAC46                                                 <xxxxxxxxxxxxxxxxsmallRNA(s)      <---------ANAC58                                        <-----------HVH21  ----------->RAV1(2)     <---------ANAC58 -               ----------->GT1       ---------->DOF2 <---------YAB1         <----------DOF2 <--------   acaagtgtttagaaatatagaaaataagtgttttgttttcaaagtcagagcgtttttgatagcctgaggttgagagcgtttttttgtgtgtcccctttgt  13769900             <----------DOF2             <---------DAG2           ------>NtERF2                                              <----------DOF2         --------->RAP2.3(1)                                         ------>ZmHOX2a(2)         ------>NtERF2                                              <------ZmHOX2a(2)         <------NtERF2                                              <---------RVE1(1)        <---------RAP2.3(1)                                        --------->ARR14(3)        <---------RRTF1(1)                                         <---------AGP1        <---------ERF1                                             <---------ARR14(3)        --------->LBD16                                            --------->AGP1       <---------RAP2.6(2)                                         <---------ARR14(2)       <---------RRTF1(3)                                          --------->ARR11(3)       <---------DEAR3(1)                                          <---------ARR11(3)       <---------RRTF1(2)                                  --------->ARR11(3)       <---------RAP2.3(2)         --------->DEAR3(1)      <---------ARR11(3)      <---------LBD16              ------->GAMYB          <---------HSFB2a(1)   <----------DOF2                 --------->RAP2.6(2)    --------->HSFB2a(1)      <----------DOF2   ------>ZmHOX2a(1)              --------->DEAR3(2)--------->HSFB2a(2)         <-----------GT1 --------->ID1           --------->ALFIN1           <---------LBD16--------->ARR14(2) --DOF2<---------RAP2.3(3)        --------->MYB46(3)<---------HSFB2a(2)   ------------>CBF          <   ttgtcctttgcggcgctttatataggggtttggcaaaccgcctctcgcgatattctcggaagatttcaagatctttttcaattttcttttcagttacaaa  13770000                                                                          --------->HSFB2a(1)                                                                          <---------HSFB2a(1)                                                                          --------->HSFC1(2)                                                                        <---------ARR14(2)                                                                        <---------GLK1(2)                                                                        --------->ARR14(2)                                                                     --------->YAB1                                          <----------DOF2         --------->WOX13(1)                                 --------->REM1(1)             --------->ANAC58        --------->YAB1                                <-------TEIL                   --------->ANAC58      <---------WOX13(1)                    <---------ANAC58    --------->At4g35610    --------->ANAC46   <---------YAB1             ---------->ID1 --------->LBD16                   ------->GAMYB    <----------DOF2         <---------ANAC58  <-----------RAV1(2)     --------->GLK1(1)<---------ATHB12<---------AtLEC2         <---------ANAC58 ------>ZmHOX2a(2)      *TSS    <------ZmHOX2a(2)<---------HSFC1(2)   ------ ---------ANAC46    <---------ANAC58    <---------At4g35610 <xxxxxxxxxxxxxxxxsmallRNA(i)   <xxxxxxxxx   ctgtgtgtttttcttgttgttttcttgatccaggtacatctctgctgtatgggaactcgatcaacaggcaatcagaacctccttttgaatgacaacatcg  13770100                                                         --------->AtMYB61                                                         <---------ALFIN1                                                        --------->MYB46(3)                                                    --------->At4g35610                                                --------->TOE2(3)                                               <xxxxxxxxxxxxxxxxsmallRNA(s)                                           --------->TOE2(1)                        ----------->GT1    <xxxxxxxxxxxxxxxxsmallRNA(s)         <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)------->TEILxxxxxxxxxxxxxxxx>smallRNA(s)         <---------HSFB2a(2)               --------->TOE1(1)          xxxxxxxxxxxxxxxx>smallRNA(i)         --------->HSFB2a(2)           <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)        <xxxxxxxxxxxxxxxxsmallRNA(i) <---------WRKY38(1)<---------MYB55(2)           <xxxxxxxxxxxxxxx     --------->ZAT2  ---------->DOF2 <---------WRKY12--------->MYB46(3)       <xxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)   <---------CCA1(2) xxxxxxxxxxxxxxxx>smallRNA(fl3)--------->ANAC46   xxxxxxxxxxxxxxxxxxxxx>smallRNA(si3) --->MYB46(3)  <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)<---------At4g35610    --------->MYB52(1) xxxxxxxxxxxxxsmallRNA(si3)         --------->WRKY18(1)-------->P     ----------->HVH21   accgcatagctcgcgaactcagagaaaggagaaacacagtcaaccttgtacctcagcaaccactcgatatggctgacgaacagaatcaacaaaatggccc  13770200                                   <-----------TGA1                                  --------->bZIP60(2)                          <-------MYC2                          <-------PIF5                          <-------MYC3                          ------->MYC3                          ------->MYC2                          ------->PIF5                         --------->ANAC55(2)                         <---------O2                         =============================bZIP_DOF                         <---------ANAC55(2) --------->ANAC58                         --------->ANAC46  ---------->DOF2                         --------->O2  <---------At4g35610                         --------->TGA1a  <------ZmHOX2a(1)                         <---------TGA1a<xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)                         --------->bZIP60(2) --------->ANAC58                     --------->HSFB2a(2)                       <---------ALFIN1--------->At4g35610                  xxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)                   <-------TEIL<---------WRKY38(1)                         --------->MYB46(3)                <---------At4g35610<-----------HVH21               --------->TOE1(3)                --------->At4g35610--------->TOE2(3)        ------>ZmHOX2a(1)     <---------HSFB2a(2)               <xxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)        ----------->RAV1(2)  xxxxxxxxxxxxxxxxxxxxxx   xxxxxxxxxxxxxxxxxxxx>smallRNA(i2) <-----------RAV1(2)<---------ALFIN1   <xxxxxxxxxxxxxxxxxxxxxsmallRNA(i2) ----------->RAV1(1) ------->TEIL --------->ANAC46     <xxxxxxxxxxxxxxxxsmallRNA(s)      <---------YAB1 xsmallRNA(i)  <xxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)    ------->TEIL --------->TOE2(3)   <xxxxxxxxxxxxx   ttccaacattggtgctggagatgcaccacgtgatcaacgtcagaggaaaggaattgcacctcctgctatccataacaacaacttcgagattaagagtggt  13770300                                                            <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)                                                         <---------ALFIN1                                                         --------->AtMYB61                                                      <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)                                                     <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)                                                    xxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)                                                   <xxxxxxxxxxxxxxxxxxxxsmallRNA(si3)                                                   --------->ANAC46                                                  xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(s2)           <---                                                 <---------ALFIN1                               <----                                                 <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)           -----                                                <xxxxxxxxxxxxxxxxxxxsmallRNA(se3)              xxxxxx                                                ------>ZmHOX2a(2)                           ---------                                               <------ZmHOX2a(2)                          >>>>>>>>>MYB98              --------->LBD16                 <---------ARR11(3)                         --------->MYB52(1)             <---------LBD16                  --------->ARR11(3)                         ------>MYB83            <-----------RAV1(2)               <-----------ARR10                          ------>MYB46(1)       <---------YAB1                         --------->ARR14(2)                       <---------MYB111(1) xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)        <---------ARR14(2)                       <---------MYB46(2) >smallRNA(si3)                              <------ZmHOX2a(1) <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3) xxxxxxxxxxsmallRNA(fl3)                <---------ATHB12--------->MYB46(3)             <---------MYB59   ctcatctcgatgattcaggggaacaaattccatggtctaccaatggaggatccactcgaccaccttgatgaattcgataggctcttcaacctaacaaaga  13770400                                                              --------->ANAC58                                                              --------->ANAC58                                                          <xxxxxxxxxxxxxxxxsmallRNA(s)                                                         <xxxxxxxxxxxxxxxxsmallRNA(i)                                                        ---------->DOF2                                                       <xxxxxxxxxxxxxxxxxxxxxsmallRNA(i2)                                                       <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)                                                       <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(i2)                                                       <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)                                                      <------NtERF2                                    <-----------GT1   <xxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)                                   ---------->ID1     <xxxxxxxxxxxxxxxxxxxxxsmallRNA(i2)            <           --------->REM1(2)     <---------MYB46(3)  ------>NtERF2  --------->HSFB2a(2)          ----           <---------ZAT14     <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)<---------HSFB2a(2)         <----           --------->ZAT14     <---------MYB52(1)    =========================RAV               -----         xxxxxxxxxxxxxxxx>smallRNA(i)                ----------->RAV1(1)                      -------      xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)          xxxxxxxxxxxxxxxx>smallRNA(s)             <xxxxxx      xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)         ----------->HVH21                <xxxxxxxxxxxxxxx     <-----------HVH21       <---------ANAC46       <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(i2)    <xxxxxxxx    <---------bZIP60(1)  --------->ZAT2             <----------ID1----------->RAV1(2)xxxxxxxxxxxxxxxx ---ZmHOX2a(2)           <---------ZAT2          <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(i2)<xxxxxxxxxxxxxxx -----ARR11(3)     <---------ARR14(2)            <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)     <xxxxxxxxx ---->ARR11(3)     --------->ARR14(2)       <---------YAB1<xxxxxxxxxxxxxxxxsmallRNA(i)  xxxxxxxxxxxxx xxxxxxxxxxxxxxxxx>smallRNA(fl3) --------->MYB52(2) <xxxxxxxxxxxxxxxxxxxxsmallRNA(fl3) <xxxxxxxxxxxxx ->DOF2  xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)  <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)<xxxxxxxxxxxxxxx   tcaatggtgtcagtgaagacggattcaagctccgtttgttcccattctccttgggcgacaaagcacacatctgggagaaaaatatgccccatgactcaat  13770500  Previous    Next  AGI:  At1g36520.1    Description:  transposable element gene. gypsy-like retrotransposon family (Athila), has a 4.4e-307 P-value blast match to GB:CAA57397 Athila ORF 1 (Arabidopsis thaliana) Range:  from: 13770049    to: 13776018    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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