Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                        --------->HSFB2a(2)                                                                      <---------HSFB2a(2)--------->AHL20(1)                                                                      <-----------RAV1(2)<---------AHL20(1)                                                                 <xxxxxxxxxxxxxxxxsmallRNA(i)                                                <---------AHL20(1)   ----------------->AGL1                                                --------->AHL20(1) --------->ARR14(2)    <---------AHL20(2)                                                <---------ARR11(3) <---------ARR14(2)  <---------YAB1     --------->ANAC46                  --------->TOE2(3)        --------->ANAC58      --------->AHL20(2)  <---------ZAT18                    <-----------ARR10          --------->ANAC58      --------->AHL20(1)  --------->ZAT18               <---------HSFB2a(2)          <---------SPL7         --------->AHL20(1)  <---------ZAT14  <---------ZAT18   --------->GLK1(2)       ------->GAMYB          <---------AHL20(1)  --------->ZAT14 <---------MYB52(1) --------->ARR11(3)     <---------MYB52(2)   --------->AHL20(2) ------------>AtSPL8            --------->HSFB2a(2)   ----------->HVH21 <---------At4g35610 -------------AtSPL8 --------->At4g35610     --------->YAB1 --------->ANAC58 ----------->GT1 -->TEIL        <---------DEAR3(2)   <---------ARR11(3)     --------->ANAC58 <---------YAB1   <------   tatgtacactctatgagtctgttcgctcaaccttctgaaaatctcaacaatattttctgacaacgcacggttccagatgatgaaaaaatattatatttta  13690300                 ----------->GT1     <---------AHL20(2)                 <---------------AtSPL8               ---------->DOF2      --------->AHL20(2)            <---------AHL20(2)      <---------AHL20(2)                                              <           --------->AHL20(2)    <---------ICU4                                                  ----           <---------AHL20(2)    --------->AHL20(2)                                              ----        --------->AHL20(2)       --------->ATHB51                                                <---        <---------AHL20(2)       <---------AHL20(2)                                              <---        <---------ICU4           <--------ATHB1                                               -------        --------->ATHB51        <---------YAB1                                       --------->AHL20(1)        <--------ATHB1          --------->ICU4     <---------AHL20(2)                <---------AHL20(2)       --------->ICU4        --------->ICU4<---------ARR11(3)              --------->YAB1     -------       <---------YAB1        <---------YAB1<---------GLK1(2)              <---------YAB1 --------->AHL20(2)     --------->YAB1        --------->YAB1  --------->ARR11(3)            <---------ARR11(3)   <------    <---------ATHB51      --------->AHL20(2)  <---------AHL20(2)         --------->ARR11(3)  <-------  --------->YAB1--------->DAG2<---------ICU4<---------CCA1(1)         --------->YAB1 --------->AHL20(2) ---AHL20(2)--------->AHL20(2)--------->YAB1<---------RVE1(1)         --------->AHL20(2) <---------AHL20(2)   tctacaataataatttaaaaagttacaaataataataatttaaaagatttttttttattctatcttatcaaataatatcataacaaattttttaaatatt  13690400          <---------AHL20(2)          --------->AHL20(2)        <---------AHL20(2)        --------->AHL20(2)     <---------AHL20(2)    --------->AHL20(2)   <---------YAB1 <---------ICU4          <---------TOE2(3)                           --------->AHL20(2) --------->YAB1       <---------AHL20(2)                           <---------AHL20(2) ---------YAB1     <---------AHL20(1)                    <---------YAB1--------->AHL20(2) ----->AHL20(1)    --------->AHL20(1)                   <---------ARR11(3) ----->AHL20(2)   <---------AHL20(2)                    --------->ARR11(3)           <-----------GT1 ------AHL20(1) --------->AHL20(2)                      --------->AHL20(1)    --------->YAB1 ------AHL20(2) <---------AHL20(2)                      <---------AHL20(1)--------->AHL20(1) -->AHL20(2)  <---------AHL20(2)                      <---------AHL20(1)  <---------AHL20(1)        - -->AHL20(1)  --------->AHL20(2)                      <---------AHL20(2)  <---------ARR11(3)     <--- ---AHL20(1)--------->AHL20(2)                        --------->AHL20(1)  --------->ARR11(3)     ---- --AHL20(2) <---------AHL20(2)                     --------->AHL20(2)<---------AHL20(2)      --------   ttattattatatatatatatatatattaatgaactaaaatatgagaataactataaaatatttttgtatataaaaatatatcaaaattaacctcttaaaa  13690500                                                                   <---------CCA1(2)                                                                  <---------ARR11(1)                                                                  --------->ARR14(2)                                                                  ------->TEIL                               --------->YAB1                     <---------ARR14(2)                               <---------ICU4                     <-----------ARR10                              --------->ICU4                     <---------CCA1(2)                   <---------AHL20(2)                            <---------ARR14(1)                   --------->AHL20(2)                           <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)                  --------->AHL20(2) <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)     <---------AHL20(2)     --------->YAB1                     ------>ZmHOX2a(2)    --------->AHL20(2)   xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(i2) <------ZmHOX2a(2) -------->ICU4--------->AHL20(2)  <---------ICU4           <---------ANAC58 ------AHL20(2)   <---------AHL20(2)<---------YAB1         <---------ANAC58                         < ----->AHL20(2)<---------AHL20(2)--------->ICU4        <---------ANAC58                             < ->AHL20(2)   <---------AHL20(2) <---------YAB1        <---------ANAC58                 <----------DOF2   taaatattaaatagaattaattttattctataatcatgatgagagagaggcgatttttcttgcgatcgtatctcttcatcttcgcctcttctttgtatcg  13690600                              <---------ATERF1(1)                              <---------DEAR3(2)                              <---------MYB46(3)                             <---------DEAR3(1)                           ------------>AtMYB77                     <-------GAMYB                    --------->LBD16                    <---------DEAR3(2)                                                 --------->MYB46(3)                   <---------TOE1(2)                                                   ------------>CBF                   <---------TOE2(2)                                                  --------->ANAC58                  --------->ATERF1(1)                                                 --------->ANAC58                  <---------LBD16                                                --------->ANAC58                  <------NtERF2 --------->ARR14(2)                            ------->GAMYB                 <---------RAP2.3(1)             --------->MYB52(1)           ----------->HVH21                 ------>NtERF2--------->ABI4(2) <---------WRKY38(1)           ----------->TGA1              <-----------HVH21<-------GAMYB    <---------WRKY12             <---------MYB52(2)             <---------MYB46(3)--------->ATERF1(1)                         --------->MYB52(1)<-------           <-------GAMYB <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(s2)              <---------ARR14(2)--------          <---------MYB46(3)<---------------------WRI1             --------->WOX13(1)-------->P ---------ANAC58<---------DEAR3(1)           >>>>>>>>>>WRKY26    ------------>CBF--------->ANAC58  -- ---------ANAC58--------->ETT(2)<---------ARR14(2)  ------->GAMYB<---------YAB1  --------->ANAC46  <-   tttcttgacaagcggttgtcgccggttatcggcggttccttcagagttgatcaacggtattacagttatcaatcgcataactgacgctacccaataccta  13690700                                                                                <xxxxxxxxxxxxxxxxxxxx                                                                          <---------ICU4 <-----------GT1                                --------->ANAC58         --------->ICU4 --ANAC55(2)                                    --------->ANAC58         <---------ATHB12      <----- ->ANAC55(2)                   <--------P       --------->ANAC46       --------->YAB1   --------->ANAC58 ------->AHL20(2)      ------------>CBF       *TSS                     --------->WOX13(1)      ------ --------AHL20(2)<---------LBD16         ----------->GT1   <----------DOF2--------->YAB1--------->ANAC58   tttaaactatgtgaatgtctctggagccaatgggttgatcagagtgaaataagccaatttcctttgttcatattaatcatggcagactgcaagaaattgc  13690800                                                                                                 ----                                                                                                 ----                                                                                                 ----                                  --------->ATHB12                        <---------YAB1       ------                                 <---------YAB1                     --------->ZAT14         <--------  <------ZmHOX2a(1)   --------->WOX13(1)                         --------->LBD16        --------->At5g28300  =========================HOX2a_HOX2a     --------->REM1(2)    --------->ANAC58       --------->LBD16 xsmallRNA(si3)     <------ZmHOX2a(2)   <---------ANAC46        --------->ANAC46       ----------->GT1 ----ZAT18   ---------->DOF2  <----------DOF2           --------->At4g35610          <--------------- --->ZAT18  <---------REM1(1)<---------DAG2<---------ZAT14      --------->ANAC58   <---------ARR14(2)   actaggaattgaagatgaagcgatcaatctcccttttgatttgtgtgaagaggcgattagctaaacccgctatagtctaattgtgaaaccggtgaatcca  13690900                                                            --------->HSFC1(2)                  -----                                                         <------ZmHOX2a(1)                 --------->CCA1(2)                                                   <------MYB46(1)                         <------ZmHOX2a(2)                                                   <---------MYB46(3)                      ==========         --------->TOE1(2)   <---------DAG2        <------MYB83                           <---------ARR11(3)      <---------ARR14(2)     <---------ANAC58     <---------AtMYB61                       --------->ARR11(3)  --------->At4g35610        <---------ANAC58    <--------P <---------HSFC1(2)            --------->AGP1  <---------At4g35610      --------->ZAT18      <-------GAMYB                          --------->SPL7 ----->ANAC58         <---------ANAC46         <---------AtMYB61                     --------->LBD16 ----->ANAC46         <---------ANAC58         <---------MYB46(3)                   --------->ANAC46- ----->ANAC58         <---------ANAC58         --------->ALFIN1                     <---------ANAC55(2) --->TOE1(2)  --------->ANAC46               <---------ANAC46                       --------->ANAC55(2) -ARR14(2)    --------->ANAC58  -------->P   <---------ANAC58           <---------ARR14(2)<---------ARR14(2) ------WRI1   --------->ANAC58<---------SPL7 <---------ANAC58           --------->ARR14(2)--------->ARR14(2)   aggaagcagaacttacgagcaatggcgagtgccttaccccgtctatggggtgttggtgaggaagtttcaagtcgtattctggactcccgtaagatccaat  13691000                                                                                <---------ARR14(2)                            <---------DEAR3(2)                                  --------->ARR14(2)                           <---------DEAR3(1)                                --------->HSFB2a(2)                          <------NtERF2                                     <-----------------AGL3                          --------->ATERF1(1)                               <-----------------AGL1                         <-----------HVH21                                  ----------------->AGL3                        <---------ANAC46                                    ----------------->AGL1                        <---------ANAC58                                --------->ALFIN1                        <---------DEAR3(1)                              <---------AtMYB61                        <---------bZIP60(1)                         --------->ALFIN1                --------->ARR14(1)                                  <---------ANAC58                --------->CCA1(2)                                   <---------ANAC58                -               <---------ARR14(2)                                   <---------ANAC46                -               --------->ARR11(1)                                 <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)             ----------->ARR10                             --------->ATHB12 ----------------->AGL2  -           xxxxxxxxxxxxxxxx>smallRNA(s)                   <---------ATHB12 --------->PCF5           - ---->ARR14(2) --------->ARR14(2)  ----------->HVH21 ------>ZmHOX2a(1)--------->ALFIN1  --------->ANAC58 ======HOX2a_HOX2a      <---------ANAC58      ------>ZmHOX2a(1)  ------->TEIL<---------HSFB2a(2)   -- ----->ZmHOX2a(1)<-------TEIL    ------>ZmHOX2a(1)xxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)   --------->ANAC58   tcctcttccaatctgaagattcgatggcgtcggtcctgagacgcggtccttggtccttcaatgaatggatgtgtgtggtccagaaatggaacccaaatca  13691100          ------>ZmHOX2a(2)         <------ZmHOX2a(2)         --------->CCA1(2)        --------->ARR14(3)        --------->AGP1        <---------AGP1        <---------ARR11(3)        <---------ARR14(2)        --------->ARR11(3)        <---------ARR14(3)        --------->ARR14(2)      ----------->ARR10  ------>MYB46(1)                                                               --------->TGA1a  ------>MYB83                                --------->GLK1(2)                 <---------O2 --------->ORA47(1)                          --------->ARR14(2)                 --------->ANAC58 -------->DEAR3(1)                           <---------ARR14(2)                 --------->ANAC58 -------->MYB46(3)                           <---------GLK1(2)                  <---------TGA1a -------->DEAR4(1)                  <---------At4g35610            --------->ZAT14 <-------TEIL -------->DREB2C(2)     <----------DOF2     <------ZmHOX2a(1) ------>ZmHOX2a(1) --------->O2<------ZmHOX2a(1) ------->DEAR3(2)       <---------DAG2--------->CCA1(2)<---------ALFIN1     <-----------HVH21      --   caccgaccaagatctgaaacaaattcctttttggattcagataagaggaatctctctccacttcctcactgaacgaatggtcacgtccattggaggacgc  13691200  Previous    Next  AGI:  At1g36360.1    Description:  transposable element gene. non-LTR retrotransposon family (LINE), has a 4.4e-39 P-value blast match to GB:BAA20419 reverse transcriptase (LINE-element) (Mus musculus) Range:  from: 13690746    to: 13696447    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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