Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                --------->YAB1                                                              --------->TOE2(3)                                                            <---------TOE2(3)                                                            <---------YAB1                                                           --------->YAB1                                                 <-----------GT1         --------->ANAC46           <                   <----------DOF2       --------->YAB1    --------->AHL20(2)         --------->At4g35610             --------->MYB52(2)    --------->TOE2(3)       <---------AHL20(2)     <-----------GT1 --- -----AHL20(2) ---------->ID1      <----------DOF2    <---------YAB1    --------->HSFB2a(2)      <--- --->GT1 <---------YAB1 <---------ZAT6 <---------TOE2(3) <---------YAB1 <---------HSFB2a(2)   -------   aatttgatattttgtttgtttctttagtgaaaattttctttaatgaaaattttactcttattaatattaatctactcgaaattttcacagttgaaagggt  13687200                                                          --------->CCA1(2)                                                     <---------YAB1    <---------YAB1             --------->DAG2      --------->YAB1  --------->YAB1              ---------->DOF2     <---------YAB1 ---------WOX13(1)  --------->LBD16              --------->AHL20(2) ------>ATHB12    <---------LBD16<----------ID1  --------->AHL20(1)                                -- ----TEIL        ------>ZmHOX2a(1)              <---------ICU4                         <---------YAB1 ---->GT1--------->YAB1    --------->YAB1      --------->ICU4----------->GT1           <---------TOE2(3)   tcattgatcattcatactcctccggactatcaaaaagcacaaacttctaaatattataagagatggtcaaatttcaacatcagagaattaagtttgcaaa  13687300                                 <---------RVE1(1)                                 <---------CCA1(1)                                --------->ARR11(3)                                <---------ARR11(3)                                <---------AHL20(1)                                --------->AHL20(1)                     <---------AHL20(2)                              ----------->ARR10                    <---------RVE1(1)                              <---------TOE2(3)                    <---------CCA1(1)                -                  <---------ARR11(3)                              --------->ARR11(3)                -                  --------->ARR11(3)       <<<<<<<<<MYB98         <---------ARR11(3)          ------- ------->AtMYB61  <---------GLK1(2)  <---------AHL20(2)          --------->YAB1     <-----------GT1--   accaaaaccccaagaccaaagattttcatgttaagatattaatatgttacttccaagaacacataaatgatattttaaaaactaaattacccctaaactt  13687400                --------->TOE1(2)                                                --------->ATHB12   <-----------------AGL3                                                       --------->ICU4   --------->YAB1------>ZmHOX2a(1)                                              <---------YAB1  <---- ------->HAHB4 ------>ZmHOX2a(2)                                   <---------ANAC46          <------- -------->YAB1<------ZmHOX2a(2)            --------->YAB1          <---------ANAC58       <---------- -->TOE2(3)  --------->ARR14(2)------->GAMYB   ---------->DOF2     <---------ANAC58    <----------DOF2 ------->ICU4<---------ARR14(2)--------->TOE2(3)        ------>ZmHOX2a(1)     <---------AtLEC2  <----   aatgatcaaaatttggatcctacaaaaactcaaccgtagatgtaatcagaaaagtctcctcgtttaatagcttgcacttggcatgatttctttaactttc  13687500                                                                          <---------WOX13(1)    --------->ICU4                                          --------->ANAC58 -----ANAC58                                  --------->AHL20(2)         <------------CBF ---DOF2   --------->ICU4         ----------->GT1           --------->ANAC58                    ----- -GT1    <---------ICU4           <---------------AtSPL8 <-------TEIL <---------MYB59  <------ZmHOX2a(1) -----ANAC58          --------->YAB1        --------->AHL20(2) ------->TEIL   <----------DOF2  ------   ttggtcattagtcattactaactacaataactcaataagttacaaaaaaaatatacaaatgcatgcacttagcctaattgctcttgggaggactacataa  13687600                                         xxxxxxxxxxxxxxxxxxxx>smallRNA(si3)                                        ------->PIF5                                        --------->LBD16                                       xxxxxxxxxxxxxxxxx>smallRNA(si3)                                       =============================MYC_MYB                                       <---------TGA1a      <-------GAMYB                                       --------->TGA1a    <---------ANAC46                                      xxxxxxxxxxxxxxxxxx>smallRNA(fl3)                                      xxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)                                      xxxxxxxxxxxxxxxxxxxx>smallRNA(se3)                                      xxxxxxxxxxxxxxxxx>smallRNA(fl3)                            ----                                      xxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)                       <----                                      xxxxxxxxxxxxxxxx>smallRNA(si3)                         xxxxxxxx                                      xxxxxxxxxxxxxxxx>smallRNA(le3)                         --------                                      xxxxxxxxxxxxxxxxxx>smallRNA(le3)                    xxxxxxxxxxx                                      xxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)               xxxxxxxxxxxx                                      xxxxxxxxxxxxxxxxxx>smallRNA(si3)                   xxxxxxxxxxxx                                      xxxxxxxxxxxxxxxxx>smallRNA(si3)                  xxxxxxxxxxxxxx                                      *TSS  ----------------->AGL1                    <---------PCF2                                      xxxxxxxxxxxxxxxxx>smallRNA(se3)                 xxxxxxxxxxxxxxx                                      xxxxxxxxxxxxxxxxxx>smallRNA(se3)               <---------DEAR3(2)                                      xxxxxxxxxxxxxxxxx>smallRNA(le3)              <---------ANAC46--                                      xxxxxxxxxxxxxxxx>smallRNA(se3)     xxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)                                      xxxxxxxxxxxxxxxxxxx>smallRNA(le3)  xxxxxxxxxxxxxxxxxxxx>smallRNA(le3)                                      xxxxxxxxxxxxxxxxxxx>smallRNA(si3) xxxxxxxxxxxxxxxx>smallRNA(s)-                    ---------->DOF2  xxxxxxxxxxxxxxxxxxx>smallRNA(le3)  xxxxxxxxxxxxxxxxxxxxx>smallRNA(i2)      --------->AHL20(2)       ---------->DOF2 --------->MYB52(1)       <---------ATHB12xxxxxxxxxxxxx      <---------AHL20(2)       ==================bZIP_DOF <---------ANAC58  xxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3) ---->DAG2          =============================bZIP_DOF <---------ANAC58xxxxxxxxxxxxxxxx>smallRNA(s) ---->DOF2 --------->YAB1 <----------ID1<-------PIF5   --------->DAG2 xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)   agttttattttaatcaaaatgaaaaagaagaacaaaagcgcccgtggcctaatggataaggcgtttgacttctaatcaaacgattgtgggttcgagtccc  13687700        <---------At4g35610        --------->At4g35610        <-------GAMYB   <---------ANAC58   <---------ANAC58   <---------ANAC46 ----->MYB52(1) -----ALFIN1 xxxxxxxx>smallRNA(s) ->PCF2--------->MYB52(2) xxxxx>smallRNA(s)            ------>ZmHOX2a(1) xxxx>smallRNA(s)             <----------DOF2 xxxx>smallRNA(i)          ---------->ID1 xx>smallRNA(s)           <-----------GT1 x>smallRNA(s)           <-----------GT1                                  --------->ICU4 ------->DEAR3(1)   <----------DOF2            <---------ARR11(3)    --------->ANAC58 -------->LBD16   ---------->ID1               <---------AHL20(1)    --------->ANAC58              <- xxx>smallRNA(s) <-----------GT1           --------->YAB1       ---------->DOF2         <----------DOF2   accgggcgtgagttgaatttttcttttttatccttttgtcttgaatcagtatatttgaacaaaaacaaaagaagccaatattgctctatgctttgttccc  13687800                                                                                                    <                                                                                              <------                                                                                              >>>>>>>ZML2                                                                                              -------                                                                                              <------                                                                                              -------                                                  ------>MYB46(1)                          --------->ARR11(3)                                         ---------->DOF2                                <---------TOE1(2)                                    --------->ANAC58                                   ------>ZmHOX2a(1)                                    ------>MYB83  ------>MYB83                        --------->TOE2(3)                                    --------->ANAC46                                 ------>ZmHOX2a(2)                                    --------->AtLEC2                                <------ZmHOX2a(2)       --------->ZAT14              ------>MYB46(1)                                <---------ARR14(2)       <---------ZAT14              --------->ANAC58                               <---------ARR11(3)   --------->ZAT6              <-----------GT1  <---------MYB59                    --------->ARR14(2) ---------DOF2              --------->YAB1      --------->AtMYB61                  --------->ARR11(3)   tctttccactatacaaattagacttgggcataataaccaagcaaaaagaaccaaacccaaaccaaaatttgaaaatactaaaatagatcctaagttctag  13687900                                                            --------->ZAT2  --------->ANAC58                                                     <---------ARR14(2)     --------->ANAC58                                                     <---------GLK1(2)   <----------ID1                                                     --------->ARR14(2) --------->MYB59   <---------HSFB2a(2)                     ----------->GT1  <---------ZAT2<------ZmHOX2a(1)   --------->HSFB2a(2)                     <----------ID1   <---------At4g35610 ---------AHL20(2)                       ---------->DOF2    --------->At4g35610 ---HSFC1(1)                     <---------ARR11(3)  --------->ARR11(3)--------->YAB1 -->HSFB2a(2)                    --------->ARR11(3)  <---------ARR11(3)<---------ICU4 ---HSFB2a(2)                   <<<<<<<<<RAP2.2    ----------->ARR10--------->WOX13(1) xxxxxxxxxxxxxx -->HSFC1(1)                   ----------->ARR10 ---------->DOF2--------->REM1(1)     ----------->GT1   aatttatagaacccgaacagaattgaaatagtttagatattcaaaaagaaaaaaagatactcagctacaccaattaggacgaaacatatggtcacaaatg  13688000                                 <---------ANAC58                                 <---------ANAC58                             <xxxxxxxxxxxxxxxxxxxxxsmallRNA(i2)                             <xxxxxxxxxxxxxxxxxxxsmallRNA(fl3)                         <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(i2)                   xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)              <---------WRKY12                  ------->GAMYB  <---------AtLEC2                     <---------WRKY38(1)                 --------->MYB46(3)                      --------->YAB1                 <---------MYB52(2)    ----------->RAV1(1)       ------->MYC3               <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3) --------->AHL20(1)  <---------ICU4              xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3) --------->AHL20(2)<---------WRKY45         <---------------AtSPL8  xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(i2)--------->WRKY18(1) xxxxx>smallRNA(se3) <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)       <-------MYC3           <-----------GT1   caaagtttagaaatgtacaacgaactaaatgtattgcatgcccacatatactaaatatatgatgacatgtggtcaacatcacaaacatttttccgatata  13688100  Previous    Next  AGI:  At1g36350.1    Description:  pre-tRNA. tRNA-Arg (anticodon: TCT) Range:  from: 13687638    to: 13687710    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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