Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                 <---------ATHB12                                                           --------->MYB46(3)                                                    ------>ZmHOX2a(2)       xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)        ==========================HOX2a_HOX2a       xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)       ===========================HOX2a_HOX2a --------ICU4                    ------->GAMYB    --------->ARR11(3) -------HAHB4                   <---------MYB111(2)<------ZmHOX2a(2) ------->ATHB51                 --------->MYB46(3)<---------ARR11(3) ------>ICU4             xxxxxxxxxxxxxxxx>smallRNA(i)  <---------MYB52(2)                           < -----------AGL15     <---------MYB46(3)          --------->ARR14(2)                               -- ---->TOE2(3)     <xxxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)  -------->P                          <------ ---------->AGL15<---------TOE2(3)                <---------AGP1       --------->LBD16     <---------ARR11(3) >KAN4(2)    xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)--------->AGP1       ------>ZmHOX2a(1)------>ZmHOX2a(1)   ataattagagtttgagtttaagaatggttcgataacaacctagttttcaatagatctactaaccaatagtttcctgagaataccatgttcctagctcttt  13595300                                                                     <---------ANAC58                                                                     <---------ANAC58                                                                    --------->STY1(2)                                                                    <---------STY1(2)        --------->ANAC58                        <-----------GT1  <---------ANAC58        --------->ANAC58                    <-----------GT1      <---------ANAC58 ---------AHL20(2) --------->YAB1     <----------DOF2         <---------CCA1(2) ------->AHL20(2) <---------ATHB12    <---------DAG2        --------->YAB1               <-----------GT1 ----DOF2  ----------->RAV1(1)     <-----------GT1      <-----------GT1  --------->TOE2(3)   attaaatcgttcgcaacacaatcatcttgctgttttcttacttttttttcttactattttactcataccttgctagcttaatctcgacatttaactcact  13595400                    <---------ARR14(2)                 <---------MYB52(1)                --------->LBD16                                                                    --               <---------ANAC46                                                                    --           <---------GLK1(1)   <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)                               <-           --------->GLK1(1)--------->TOE2(3)                                                     ---          <---------ARR11(3)--------->TOE1(3)  ------>ZmHOX2a(2)             --------------->AtSPL8--          --------->ARR11(3)<---------MYB59  <---------ARR11(3)      >>>>>>>ZML2<-----------GT1   <--      ---------->DOF2     ------->TEIL       --------->ARR11(3)      <---------HSFB2a(2)         <---   gtttgaacaaaagaactccgtgaattcgaacctaaaatactgcaattgatctcttatttgagagagtagttctaggtaatttgaaccatatcaaatttgg  13595500           --------->ARR11(3)       --------->LBD16     <---------HSFB2a(2)   --------->ARR14(2)                                                                 <---------ANAC58   <---------ARR14(2)    --------->ATHB12                                             <---------ANAC58  <---------MYB52(1)     <---------ICU4                                               <---------ANAC46 ------->RAP2.3(1)      --------->ICU4                                              <---------ARR14(2) ------->DEAR4(2)       <---------YAB1                                              --------->ARR14(2) -----NtERF2          <---------ICU4                                               <---------CCA1(2) --->NtERF2<---------ARR11(3)                                                    <<<<<<<<CAMTA3 ------->ATERF1(1)    --------->YAB1                                           --------->ANAC55(2) -------RAP2.3(1)    --------->ICU4                                            --------->ANAC58 ------DEAR3(1)     <---------KAN4(2)                      <-----------GT1     --------->ANAC58   <--   cgccgtttccgaagttcttgggaatcatcattgagttttgtttagagatttagtctagtttttacttctattttgttactcacgcgtttcttgttttctt  13595600                                                                                                    -                                                                                                   --                                                                                                   --                                                                                                   --                                                                                                 ----                                                                                                 <---                                                                                                 ----                                                                                                 ----                                                                                                 <---                                                                                                 <---                                                                                                 <---                                                                                                -----                            --------->ANAC58                                                    -----                            --------->ANAC58                                                   ------               xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)                                         --------            --------->At4g35610                                                             ---------            <---------At4g35610                                                             ---------          <-----------RAV1(2)                 ---------->DOF2        <---------MYB52(1)     --------- --------DOF2 --------->ALFIN1    <---------------AtSPL8            <-------GAMYB<------ZmHOX2a(1)---   cttttctgtgtttcaggtgtatgcctaggcaaacaaggagtacaaaacaaaaggagcttatcaacttgtctgttatgggcttaggaacacttgaacgcac  13595700 ------->GAMYB -------->MYB46(3) ---->MYB83 ---->MYB46(1) ------>P ----->DEAR3(1) ------MYB55(2) ----->MYB46(3) ----->AtMYB61 ------MYB111(2) ------MYB46(2)                            --------->At4g35610 ------MYB111(1)                           <---------At4g35610                   <xxxxxxxxxxxxxxxxsmallRNA(i) ---->DEAR3(2)                             <---------ZAT2                        --------->ANAC58 ---->MYB46(3)                          ------->GAMYB                            --------->ANAC58 ->TEIL                               <---------At4g35610                   xxxxxxxxxxxxxxxxxxxxx>smallRNA(si3) ->ZAT18                              --------->At4g35610                <xxxxxxxxxxxxxxxxsmallRNA(s) >ANAC58                    --------->MYB52(1)--------->At4g35610      <---------TOE2(3)          <-- >ANAC46                   ----------->HVH21 ----------->HVH21     --------->CCA1(2)   xxxxxxxxxxxxxx >ANAC58                  *TSS      <---------WRKY38(1) <------ZmHOX2a(1)<------ZmHOX2a(1)       <--- ------>MYB55(1)   ------------>CBF <---------WRKY12 <xxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)         <---   caaccaaaaaacttagaaattagcaatggctaacagagtcaacagagctgatgcagaaggagttttgagagatgaggatgggcaagcctacaatgaggct  13595800                                                                    --------->LBD16                                                                   --------->ANAC58                                                                   --------->ANAC58                                                               ---------->DOF2                                                              ---------->CDC5                                                          ------>NtERF2                                                          <---------ATERF1(1)                                                         <------NtERF2                    --------->At4g35610              <---------YAB1                             --------->ANAC58                 <---------At4g35610              --------->ICU4  ----------->RAV1(2)        --------->ANAC58                 --------->ZAT2         <---------ANAC58    --------->MYB52(1)         ------>NtERF2                     <---------ZAT2         <---------ANAC58    -------->P <---------------------WRI1 --------->ANAC46     <-----------RAV1(2)        <---------MYB46(3)   ------>MYB46(1)       <-----------RAV1(2)                --------->ANAC58 ---------HVH21              ------>MYB83        --------->GLK1(2)------->GAMYB       --------->ANAC46 xx>smallRNA(s) xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)  <---------ANAC58               --------->ANAC58 ---MYB83<---------ANAC46   ------>ZmHOX2a(1)--------->YAB1<------NtERF2   <---------At4g35610 ---MYB46(1) --------->ARR11(3)     <------ZmHOX2a(1)  <---------ANAC58    --------->At4g35610   ggtcagagattgggtgatcatggactcatcctacctgaggatgtcgatgagaatcaggcgcgcctcaacgcgcaaatagctgctagagacgcagcagggc  13595900                                                                                                    -                                                                                                    -                                                                             --------->MYB52(1)     -                                                                       --------->ANAC46            --                                                                    <---------SPL7                ---                 ------->GAMYB                                  <---------ANAC46                -----              --------->MYB52(1)   --------->AtMYB61       <---------At4g35610              <--------              ----------->RAV1(1) <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3) --------->ANAC58 --------->ETT(2)           --------->ANAC46      xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3) --------->ANAC58<------NtERF2=        <---------ETT(2)         ------>NtERF2           ================================RAV<xxxxxxxx    --------->ETT(2)            --------->ANAC46         <-----------RAV1(2) ----------->RAV1(1)<xxxx    <---------ETT(2)      --------->WOX13(1)     ----------->TGA1 <------NtERF2 ------->GAMYB<xxxxxxx  <-----------HVH21    <-----------HVH21 <xxxxxxxxxxxxxxxxsmallRNA(i) --------->SPL7 --------->ALFIN1   tcgctgtcgatcgacacaacagaggtgtcaatcgacaccatcgggagtagaatgacgatgcagatggtgtcgaacgacacaacagaggtgtcgatcgaca  13596000                                        <---------TGA1a                                        --------->bZIP60(2)                                        <---------O2                                        --------->O2                                        ================================MYC_MYB                                        --------->ANAC46                                        --------->TGA1a                                      <---------ALFIN1                                     --------->MYB46(3)                                     <xxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)                                   <---------ARR14(2)       --------->ARR14(2)          --------->ARR14(2)       <---------GLK1(2)          <xxxxxxxxxxxxxxxxsmallRNA(i)       <---------ARR14(2)        --------->LBD16 <---------ALFIN1               --------->ANAC55(2) ------->P                      <---------ANAC46 ----->MYB83                    <---------ANAC58 ----->MYB46(1)                 <---------ANAC55(2) --------->RAV1(1)          <---------ZAT2  <---------SPL7 ------>AtMYB61         ------>ZmHOX2a(1)  --------->TOE1(1) ->NtERF2   ------>ZmHOX2a(1)   <---------ANAC58                                           ========== -ETT(2)--------->GLK1(2)   --------->ZAT2 --------->TOE2(1)         ----------->HVH21     <------ZmHOX2a(2) =================================================MYC_MYB           xxxxxxxxxxxxxxxx>smallRNA(s) xxxxxxxxxxxxxxxsmallRNA(si3)   <---------HSFB2a(2)             ------->GAMYB     --------->YAB1 xxxxxxxxxxxxxxxxxsmallRNA(si3) --------->HSFB2a(2)      --------->GLK1(1)xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3) xxxxxxxxxxxxxxxxsmallRNA(se3) <---------LBD16           <xxxxxxxxxxxxxxxxxxxsmallRNA(si3)<----------   ccaacaccagattcctgtagctattcctccagttgcggaaccacgtcgtactcttggggatttcaacaggcctgacctgttctatgctaatcgatcagcg  13596100                                                            --------->At4g35610                                                            <------NtERF2                    xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)   <---------At4g35610                --------->LBD16                             --------->ZAT2               --------->HSFB2a(2)              <----------DOF2          --------->AtMYB61     <---------At4g35610--------->MYB52(2)         <---------ATHB12       --------->ZAT2 <---------ANAC58              <---------CCA1(2)      -         --------->MYB46(3)     --------->At4g35610<xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)  <<<<<<<<<<<        -------->Pxxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)     <---------ZAT2 <---------ANAC46        <-        ------>MYB83<------ZmHOX2a(1)          <---------ANAC58   ------>ZmHOX2a(1)       >>>>>>>>>>>  ------->TEIL <---------HSFB2a(2)         <----------DOF2 --------->ANAC58<---------ANAC58    <----- ==========================HOX2a_HOX2a<---------At4g35610  --------->ANAC58<---------ANAC58  -------- -HVH21 ------>MYB46(1)--------->MYB46(3) xxxxxxxxxxxxxxxx>smallRNA(s)<---------AtLEC2  --------->MYB46(3)   attgtaccccaaccattccagaggaacgactatgagctgaagctactttgctttagttggccagcatcctttccatggcttatctcatgaacagccaatg  13596200  Previous    Next  AGI:  At1g36210.1    Description:  transposable element gene. gypsy-like retrotransposon family (Athila), has a 1.1e-71 P-value blast match to GB:CAA57397 Athila ORF 1 (Arabidopsis thaliana) Range:  from: 13595726    to: 13599075    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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