Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                                       <------ZmHOX2a(2)                                                                                    <---------ARR11(3)                                                                                   <------ZmHOX2a(1)                                 ----------->GT1     --------->TOE2(3)          <-----------RAV1(2)                       --------->CCA1(2)         ------->GAMYB              ------>NtERF2 --------->TOE2(3)        --------->AtMYB61      ---------->DOF2  <---------MYB52(2)       --------->ZAT2--------->WOX13(1)      --------->SPL7  <---------ARR11(3)        --------->MYB46(3)       --------->At4g35610   --------->AtMYB61  --------->ARR11(3)   --------->TOE2(3)             <---------At4g35610      ---   catcaccataccacaacttacaaagatatatcagaaagttaacaatctcaacaaacctcgataaatccaagttttagctgcctcaggatcaatctcaact  13435200                           <---------ALFIN1                          <---------ZAT18                <--------HAHB4                <---------ICU4                --------->YAB1                                     --------->ARR14(2)               <---------YAB1                                      <---------ARR14(2)           --------->TOE2(3)                                     <------MYB46(1)         <---------YAB1   <---------ZAT14                        <------MYB83         <---------TOE2(3)--------->ZAT14                       --------->MYB59        <-----------GT1  <---------ALFIN1                      <-------TEIL                         <       --------->YAB1    --------->AtMYB61                 <---------TOE2(3)                  <------      <---------YAB1    --------->ANAC46                   <---------TOE1(3)     <---------AHL20(2) < ------->DOF2  --------->ICU4                <---------YAB1--------->MYB59     ------->TEIL ---------   aaaagactattatcgttatcattaccaccacactcagaaacaacttgatgattttctggtttaggttcggttctaccgatgaatttatcgagagtagatt  13435300                                 <---------WOX13(1)                                 xxxxxxxxxxxxxxxxxxx>smallRNA(i2)                              <---------MYB52(1)                            <---------ANAC55(2)                            <---------------AGL15                            --------->ANAC55(2)                            --------------->AGL15         ------->PIF5       --------->ANAC46         <-------PIF5 <---------ARR11(3)                                                 --------->At4g35610        <---------ZAT2--------->ARR11(3)                                                 <---------At4g35610        --------->ZAT2<---------GLK1(2)                                               <---------ZAT2       <---------TOE1(2)   <-----------------AGL2               --------->ANAC58      <---------At4g35610       <---------TOE2(2)   ----------------->AGL1               --------->ANAC46      --------->At4g35610      <-----------RAV1(2)  ========================================================================== ----------DOF2     ----------->ARR10 <---------MYB46(3)        --------->ANAC58     <-----------RAV1(1) ---GLK1(2)<---------MYB46(3)--------->LBD16       <---------TOE2(3)             --------->WRKY12 XXXXXXXXXXXXXXXXXXXXMIR824----------------->AG    ---------->ID1                --------->WRKY38(1) -->ARR10<---------MYB52(1)<---------LBD16       --------->MYB52(2)            <----------DOF2   gtcttttcgcaggtggtttagtgagattttccgtaattggtggatgagcgtttgtggtttttagacaagccaagtcgatttctttgactgctgcttccca  13435400                                        <---------AHL20(2)                                        --------->AHL20(2)                                    --------->AHL20(2)                                    <---------AHL20(2)            <------ZmHOX2a(1)    <---------ICU4       ------>ZmHOX2a(1)         --------->YAB1      --------------->AGL15      <--------HAHB4     ----------------->AGL1      --------->ATHB51                               ------>NtERF2  <---------GLK1(1)             --------->ICU4              ---------->DOF2    --------->DEAR3(1) =====================MADS_MADS --------->AHL20(2)   ---------->DOF2        --------->ANAC46<--------   atcgaattcctgtaggagaaaactcagaagttgaataattaaaaaattgattcaaaaacgcagaaagagattgaacttacgccgtcttcttcgatggttt  13435500                                           --------->ARR14(2)                                           <---------ARR14(2)                                      <-----------HVH21                                     --------->ANAC46                                     <---------O2                                     --------->bZIP60(2)                                     --------->O2                                   <---------ALFIN1                                 ------>MYB83                                 ------>MYB46(1)              <---------ALFIN1                               <---------MYB111(1)          <---------ALFIN1                               --------->AtMYB61    --------->ATHB12                               <---------MYB46(2)  <---------YAB1                            --------->ZAT6<---------CCA1(2)<---------ZAT18              ------>ZmHOX2a(2)--------->MYB46(3)  --------->ICU4             <------ZmHOX2a(2) <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)<---------DAG2            --------->ARR14(2)--------->ANAC58   --------->YAB1   ------>NtERF2         ------------>CBF            <---------ARR14(2)--------->ANAC58   <---------ICU4  --------->DEAR3(1)    --------->ZAT6 -MYB46(3)  <---------ARR11(3)--------->ANAC46  --------->ICU4--------->ANAC46    --------->YAB1 ----   ctattggaaccctagatcccatccaagttaacaccaaacacgtcgtatccatgatgatttgtccacaccgccttctcatttcaagtataacacaataaac  13435600                                                                                                -----                                                                                                -----                                                         <---------ARR11(3)                     -----                    <---------AHL20(2)                <---------ATHB12                        -------                   --------->AHL20(2)               ------>MYB46(1)                           <------                   <---------AHL20(2)               ------>MYB83                             --------               <---------AHL20(2)      --------->ANAC46  --------->ARR11(3)                  ------>MYB46(1)             <----------DOF2          --------->TOE2(3)<---------AHL20(2)            <-------TEIL   -          <---------ARR11(3)   --------->TOE2(3)  <---------MYB59               <--------P --------->AtMYB61          --------->ARR11(3)<-----------GT1 --------->ANAC46 <---------CCA1(2) <-------GAMYB ------>MYB83 ----->AtMYB61 --------->AHL20(2)  <-----------GT1--------->TOE2(3)           ----------->GT1<xxxxxxx   caaaaccgatattatcttttattaaatgaataacattataccctaaacacaacctaataaatcttatcttgtgactcatagggttgattcataccaacac  13435700                                                                  <---------ZAT18                   >                                                        >>>>>>>>>>WRKY6                             <                                                        >>>>>>>>>>WRKY11                            >                                                        <---------WRKY18(1)                         >                                                       --------->WRKY38(1)                     <-----                                                       --------->WRKY45                     --------- ---->ANAC58                                           --------->WRKY12                   <---------ICU4 ---->ANAC58                                     <----------DOF2  <---------ZAT14         --------->YAB1 ---->ANAC46  --------->WOX13(1)               <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)       <--------HAHB4 -->ZAT6    ------------>CBF                 xxxxxxxxxxxxxxxx>smallRNA(i)                --------->ICU4 ---ALFIN1 --------->TOE2(3)             <---------ANAC46         --------->ZAT14        <---------YAB1 >P  <-------TEIL  ------->TEIL          <---------ANAC58         --------->ZAT18        <---------ATHB12 --------->DOF2 <---------ATHB12         <---------ANAC58    <---------MYB52(1)        --------->YAB1 xxxxxxxxxxxxxxxxsmallRNA(fl3)    <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(i2)              <----------DOF2 >   tcaaaagttcatacatcaatgaatatcacaaatttcacgagtagcgtccatcttttgttgaccattagttcacttgtttatagacactttaatcattatg  13435800        <---------YAB1       --------->KAN4(2)     <---------YAB1 <---------WOX13(1)                            <---------ICU4 >>>>>>>>GATA-1                   <---------CCA1(2) ------------CBF            --------->At4g35610--------->ATHB12             --------->ZAT2 >>>>>>>>GATA-3    <------------CBF           <---------ATHB12      --------->YAB1 >>>>>>>>GATA-2  --------->ARR11(3)           --------->ICU4      ------>MYB83 ----ANAC46      --------->ARR14(2)  --------->TOE2(3)            ------>MYB46(1) >ICU4<---------ICU4        <---------At4g35610--------->YAB1   <---------MYB59                     - >>>>>>>>GATA-4  <---------ARR14(2)<---------ARR14(2)           --------->AtMYB61             -------   tggattgatcattctagagtatattgtggatgctgcaaatctcaaaaaatcattagccatgagagaccaaacataacaagctcagacttatgtcaaacaa  13435900                                                                                 <<<<<<<<<CBP60g                                                                    --------->ARR11(3)                                                                    <---------ARR11(3)                                                                    <---------ARR14(3)                                                                    --------->ARR14(2)                                                                    --------->ARR14(3)                                                                    <---------ARR14(2)                                                    <---------YAB1  --------->AGP1                                                   <---------AHL20(2) ------>ZmHOX2a(2)                                                   <---------AHL20(1)<------ZmHOX2a(2)                                          ===================================HOX2a_HOX2a                                          <------ZmHOX2a(1)   <---------YAB1     <<<<<<<<<SARD1                                        --------->TOE1(1)   <---------ICU4      ------>MYB46(1)                                      --------->TOE1(2)    --------->ICU4       ------>MYB83                     --------->YAB1   --------->TOE2(2)    <---------YAB1  <-----------GT1   --------->YAB1  ------->TEIL <xxxxxxxxxxxxxxxxsmallRNA(i)--------->ATHB12  <---------MYB59 -------->YAB1  <xxxxxxxxxxxxxxxxsmallRNA(i)     <---------YAB1    <---------GLK1(1)        --------- -->YAB1  --------->ZAT18--------->GLK1(2)==================================HOX2a_HOX2a     ---------   aataatcaagagtgcaaaatgaatcacaatctgaaggaaacctaggactctattatttttgatgattagagatcttcttaccaaatttctcagcgagcca  13436000                    --------->GLK1(2)                   --------->ARR14(2)               <---------LBD16                                     --------->TOE1(3)              ------>ZmHOX2a(1)    <---------At4g35610             --------->TOE2(3) <-----------HVH21 <---------GLK1(2)               <---------ARR14(2) >ANAC58  --------->ARR14(2)       --------->At4g35610      <-----------HVH21      ------>NtERF2 >ANAC58  <---------ARR14(2)------>NtERF2          --------->ARR14(2) ---------->DOF2   ttgtgtcaaacaaatccttcggaatctcgacgactactgctcccaactctccgaatttgatgtgtcaaaccctaaagaattgctctgcctgtagaacaga  13436100  Previous    Next  AGI:  At1g36020.1    Description:  similar to DEAD/DEAH box helicase, putative [Arabidopsis thaliana] (TAIR:AT1G35530.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO15456.1); contains domain PTHR14025:SF5 (PTHR14025:SF5); contains domain PTHR14025 (PTHR14025) Range:  from: 13435131    to: 13435552    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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