Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100         --------->GLK1(2)    --------->ARR11(3)                                                        <---------ARR11(3)    <---------ARR11(3)                                        <---------RVE1(1) ------AHL20(2)               <---------At5g28300            <---------ARR14(2)               <------ ---ARR11(3)                 <-----------GT1                 <---------MYB52(1)               <------ -->ARR11(3)               <---------ANAC58    <---------AHL20(2)             --------->ARR11(3)    - ---ICU4           --------->TOE2(3)           --------->AHL20(2) <-----------GT1             <------ ---AHL20(1)    <---------ARR14(2)     <----------DOF2       --------->ARR14(2)            --------->ICU4 -->AHL20(1)    --------->ARR14(2)<---------MYB52(1)        <---------RAP2.6(3)  <----------DOF2    - -AHL20(1)   --------->YAB1<---------ANAC58   --------->AHL20(2)  <---------AHL20(2)<---------ANAC46-   ttcttagatattctatcgtaacctcattttcttaccgttttcttttcatttaattcaaatgccgatatttactcgcttgaaatcttttgtgtaattaaga  13427300            <---------ARR11(3)            --------->ARR11(3)            <-----------ARR10            <---------ARR14(2)      ------->GAMYB     <---------ALFIN1   ----------->RAV1(1) ---TOE1(3) <---------ARR11(1) ---TOE2(3) --------->ARR14(2)                                                    --------------->AGL15 -------->ANAC58                                         <---------AHL20(2)       <---------------AGL15 ---YAB1   <---------CCA1(2)                       ------>NtERF2                 ----------------->AGL3 -------->ANAC58                                  --------->DEAR3(1)             ----------------->AGL2 -------->ANAC46   <---------At4g35610     <---------AHL20(2)           ----------->GT1            --   ttaagcaacacacatatcttccgctcatatacaaaatttctgcatttattcgccgagatttattcagttccatttggaaaaaatccaattacagaaacaa  13427400                         --------->ANAC58                    --------->YAB1                <---------YAB1              --------->ATHB12              --------->YAB1              <---------ICU4             <---------YAB1             --------->ICU4--------->YAB1                  --------->AHL20(2)      <---------ARR14(2)       <---------ZAT14   --------->ANAC58                  <---------AHL20(2)      --------->ARR14(2)   --------->ZAT6  <---------YAB1             --------->TOE2(3)         --------->ARR14(2)     <----- ------->AHL20(2)--------->YAB1              ----------->GT1            <---------GLK1(2)  --------->AHL20(2)   atttaagactacagaatgattataatcaagcatattcaaaaatgaaaacgtttaatgctaaatatttagttcaatattctctacatattcgaattaaaaa  13427500                                                                                        <------------CBF                                                                                       --------->ATHB12                                                                                      <---------YAB1                                                                                  <------------CBF        <----------DOF2                                                          <---------AHL20(2)     --------->ARR11(3)                                                  <---------TOE2(3)     <---------ARR11(3) --------->YAB1             --------->TOE2(3)   <---------AHL20(2)<---------WOX13(1)    <---------CCA1(2)  <---------YAB1    --------->ATHB12     --------->TOE1(3) <---------AHL20(2) ----ICU4  <-----------GT1              <---------YAB1        --------->TOE2(3)<-----------TBP------>ZmHOX2a(2)   ttgcctaaatcttttacaatattctatcataactatattgttatcatttgatttcttaatcttcccttaaaaatttatgttatttattgtgattgatcgt  13427600                                              --------->AHL20(1)                                              <---------ARR11(3)                                              --------->AHL20(2)                                         ------------>CBF                                      <----------DOF2                                     <---------ANAC58                            --------------->AtSPL8                         <---------GLK1(2)    <---------AHL20(2)                         --------->ARR11(3)   --------->ARR11(3)                         <---------ARR11(3)   <---------AHL20(1)                       <---------At4g35610              <---------TOE2(3)      <---------ANAC58              *TSS ---------->DOF2--------->At4g35610   ataatctaatttgtttaagaaatataagattttgtacttgctttccaatatattctgaaaccgattcaactttggaaagtggattaatgagctctctctt  13427700                                                                                                   --                                                                            --------->ARR14(2)     <-                                        <------ZmHOX2a(1)                   <---------ARR14(2)    ---                                <---------HSFB2a(2)                       --------->MYB59         <--                            <---------ANAC46                            <<<<<<<<<MYB1         -------              <---------TOE2(3) --------->HSFB2a(2)                     <---------MYB52(1)   <-------            ---------->DOF2 <---------ANAC58                 <---------AtLEC2 ------>ZmHOX2a(2)------     <---------TOE2(3)      <---------ANAC58     ---------->DOF2        <<<<<<<<<MYB2<---------ANAC46   attgatataggttttaaaggaaacaagtttacttggagaagaggaagggaagaaaggaatgttgtatggaagcagttagatcgggttttgtgtttcccgc  13427800                                                                                             <-------                                                                                             <-------                                                                                             <-------                                                                                            <------NtERF2                                                                                           --------->MYB55(2)                                                                                          --------->ALFIN1                                                                                          <---------DEAR3(1)                                                                                        <---------ANAC46                                                                                        <---------ANAC58                                                                                        <---------ANAC58                                                <---------RAP2.6(2)                --------->At4g35610       <---------ZAT14                          <---------ANAC55(1)                <---------TGA1a      <-----------HVH21                         <---------ANAC46                   <---------ZAT2   ------>NtERF2                           <-----------RAV1(1)                     --------->ZAT2  --------->ANAC58                         <---------MYB46(3)                      --------->O2  --------->ANAC58                         --------->MYB52(2)                      ----------->RAV1(2)  --------->ANAC46                       <----------DOF2                           <---------At4g35610 <---------LBD16                         <---------MYB52(1)                   ===============MYC_MYB --------->MYB46(3)               --------->At4g35610                         ------->GAMYB<---------MYB46(3) ------->ARR14(2)                 <---------At4g35610                        <<<<<<<<<TAC1<---------RAP2.6(2) --------ARR14(2)                 --------->ZAT2<---------ANAC58    =========================bZIP_DOF ------>GLK1(1)    --------->ANAC58  ------>MYB46(1)                <----------DOF2<---------O2<xxxxx -------GLK1(1)    --------->ANAC58  ------>MYB83              <---------ALFIN1<-----------HVH21 -->LBD16        <------ZmHOX2a(1)=====================RAV   ------->TEIL    ================MYC_MYB --LBD16      <---------ANAC46  <---------ALFIN1<---------ANAC58  <---------DAG2   --------->TGA1a --->LBD16    <-----------RAV1(2) ----------->RAV1(2)     --------->AtLEC2   <------------AtMYB77   atacccgccttcagtggcaggaagccatggtgacacacctgccctttgttgcgtctgatcatgcaccactctttgtccaactgtcacctggggtggctgg  13427900                                                           xxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)  ----                   <---------TOE2(2)               <xxxxxxxxxxxxxxxxxxxxxsmallRNA(i2)         -------      <------ZmHOX2a(1)                           <---------GLK1(2)                           -------   --------->LBD16 <---------TOE2(3) <---------ANAC46     <------ZmHOX2a(1)                   <------ --ANAC58          <---------TOE1(3) <---------ANAC58  <---------LBD16                <---------ARR11(3) --ANAC46          <---------TOE1(2) <---------ANAC58  <-----------RAV1(2)            --------->ARR11(3) --ANAC58<------ZmHOX2a(1)  <------ZmHOX2a(1)   <---------TOE2(2)         <---------ANAC46<---------- xxxxxxxxxxxsmallRNA(i)   <---------TOE2(3)  --------->ANAC46 <---------MYB46(3)     --------->YAB1   gaacccgaggaggagaccgcttaggtttgaggaagcatggcttaaacacacaggttttcaggagttgttgtctgcgtcttggagaaatgatattagtaca  13428000                                    --------->ALFIN1                                   ------->PIF5                                   <-------PIF5                                  --------->ZAT2                                  <---------ZAT2                                  --------->At4g35610       ----------->HVH21        xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)  --------->HSFB2a(1)           <-----------RAV1(2)                            ----------->GT1 ----->ANAC46                  --------->LBD16                             ========================== -->ZAT18                    <---------LBD16                           <------ZmHOX2a(1) -->ZAT14                --------->ANAC58                         --------->DAG2 ---ZAT14                --------->ANAC58                  ----------->GT1 <------ZmHOX2a(1)      --- -----AtSPL8           --------->CCA1(2)         --------->ALFIN1---------->DOF2  <---------AHL20(2)   ccgaaggctctgacaggtttgagagagacgctccgcaggtggaacagagaggtgtttggagatgtgaaaaagaggaaggatgagttaattagtgagataa  13428100             <---------At4g35610     --------------------->WRI1             --------->ZAT2          <----------DOF2            ---------->DOF2             <---------ZAT2         <---------ANAC58        <----------DOF2   <------ZmHOX2a(2)                <---------ANAC58       <---------------AGL15   --------->CCA1(2)             <---------MYB52(1)        --------------->AGL15  <---------ARR14(2)             <--------P               ----------------->AGL3       <<<<<<<ZML2  --------->ARR14(2)        <---------ALFIN1          <---------ANAC58              >>>>>>>ZML2  --------->ARR11(3)     --------->PCF2               <---------ANAC58              --------->HSFC1(1)  <---------ARR11(3)   <---------ZAT18               <---------HSFC1(2)             <---------HSFB2a(2)  --------->AGP1       --------->ZAT14               <---------HSFB2a(1)            --------->HSFB2a(2) =========HOX2a_HOX2a  --------->ZAT18               --------->HSFC1(2)             <---------HSFC1(1) ------->DOF2--------->At4g35610<-------GAMYB        --------->HSFB2a(1)    <---------REM1(1)       -   caaagatccaagagcagctggatagtgctcccacggttgctttgttagaatcagaggcttcccttttaaaggagttcgatgtagttctagaacaagaaga  13428200  Previous    Next  AGI:  At1g36010.1    Description:  transposable element gene. non-LTR retrotransposon family (LINE), has a 2.8e-40 P-value blast match to GB:AAA67727 reverse transcriptase (LINE-element) (Mus musculus) Range:  from: 13427667    to: 13431296    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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