Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                        <---------LBD16                                                             --------->ZAT2                     <---------MYB46(3)                      --------->At4g35610                     ----------->GT1                       <xxxxxxxxxxxxxxxxxxxxsmallRNA(si3)                    --------->ALFIN1                      ---------->DOF2      ------>ZmHOX2a(1)                                  xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3) ---------WOX13(1)  <---------AtMYB61                  --------->ANAC46    <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(i2) ------>ATHB12    <---------ANAC46                     --------->ANAC58  --------->ZAT18 ----->ICU4       <---------bZIP60(2)           <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3) ------YAB1  <---------At4g35610            ------>ZmHOX2a(1)<---------At4g35610 --->YAB1    --------->At4g35610           xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)                  <xx --DOF2  <-----------HVH21---------->DOF2---------->ID1--------->ANAC58  <---------ZAT18        <xxxx   tgattgtccttcgtcatatgaggtggtttaaagcagcgtttttgtccttcttccctcacacaaagctgtctctcgggcacaagttgccatttttctctaa  13423400                                               <---------ZAT18                                               --------->ZAT18                                   xxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)                    --------->At5g28300   --------->ZAT14                   ----------->GT1--------->AHL20(2)               --------->HSFB2a(2)                  ----------->GT1 <---------AHL20(1)               <---------HSFB2a(2)  ----------->GT1              --------->REM1(2)   <---------AHL20(2)            <---------ZAT6     <------------CBF             xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)           <--------P    <------ZmHOX2a(2)        <---------ALFIN1   ----------->GT1<---------ZAT14 <---------YAB1  <---------ARR11(3)  <xxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)    xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(i2)    ------------>CBF xxxxxxxxxxxxxxxxxxxxsmallRNA(le3)xxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)    --------->ARR11(3) -------- xxxxxxxxxxxxxxxxxxsmallRNA(fl3)  --------->AHL20(1)--------->AHL20(2)---------->DOF2  <---------TOE2(3)   tacaaacttcacaccttgtaggggtaaaattgtcaataaaatagtatagtgccataaaatatggtagttttagaaagatcaatgcaattgtggtaatttt  13423500                                                                                                   --                                                                                                   <-                 --------->ALFIN1<---------ICU4                                                   ---              --------->DAG2     --------->YAB1                                                   ===     xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)                                                   <-------    --------->GLK1(2)           <---------ATHB12      <---------ARR11(3)                    <--------    <---------ARR11(3)     <xxxxxxxxxxxxxxxxsmallRNA(i)                                     ---------    --------->ARR11(3)    --------->ANAC58            --------->ARR11(3)                    ---------    <-----------ARR10     --------->ANAC58     <---------TOE2(3)                            <--------   <---------GLK1(2) <----------ARF1          ---------->DOF2                          ------------>CBF ->ICU4      ---------->DOF2------------>CBF <---------AHL20(2)        ---------->DOF2--------->TOE2(3)   ggaaagaatcttttcaaaagtggtagacaagtcaataatcccaaaatttaaagtaagataatattagttttttaaaagtcaaatgtaatctcaatttatt  13423600                                   ---------->DOF2                        --------->WRKY12 ------->HSFB2a(2)              <----------DOF2                           --------->WRKY38(1) --------HSFB2a(2)      <-----------RAV1(1)                             <----------DOF2             - -------------->AG      --------->ALFIN1  <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)                     - =============================================MADS_MADS          --------->AHL20(2)            <----- --AHL20(2)          <---------TOE2(3)    <---------ARR11(3)     <---------AHL20(1)         --------- -AHL20(1)         <---------AHL20(2)     --------->ARR11(3)     --------->AHL20(1)        --------->YAB1 >AHL20(1)        --------->AHL20(2)<-----------GT1              <---------AHL20(2)        <---------ICU4 >AHL20(2)  ----------->GT1   <---------------AGL15             --------->AHL20(2)        --------->ICU4 -AHL20(2)---------->DOF2     --------------->AGL15           --------->YAB1              <---------ATHB12   tccaaaacagaataaagaaaattaatgtgttgctcttttaagcacatcttcatattttgacctctaataaatttctttgactgcattttgcaaacattat  13423700                                         --------->AHL20(2)                                 ---------                                    ------------>CBF                                        ---------      <---------ANAC55(2)          ------>ZmHOX2a(1)                                        <--------      --------->ANAC55(2)--------->AHL20(2)                --------->ZAT6            <---------HSFB2a(2) ---------->TBP          <---------AHL20(2)      --------->YAB1                      --------->HSFB2a(2) -------->AHL20(2)      <---------AHL20(2) <---------ANAC55(2)        --------->AHL20(2)<------ZmHOX2a(1) ----ARR11(3)           --------->AHL20(2) --------->ANAC55(2)  ---------->DOF2<---------ARR14(2)   < >TOE2(3)         ----------->GT1 --------->TOE2(3)    <---------AHL20(2)      --------->ARR14(2)   <   ctataaatacttatttgataatgtaattttattcatccttcaattacttaatcaaaatttatctctaaaagaataaatatggaacctctaggaaaccgtc  13423800                                                                                                    <                                                 ---------->TaMYB80                                 <                                                 <---------KAN4(2)                               <---                                                 <---------ARR14(2)                          <-------        --------->LBD16                    --------->TOE1(2)                                 <-------       <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)     --------->ARR14(2)                        --------->AHL20(2)       <---------ANAC46                  --------->GLK1(2)                                 <---------AHL20(2) ------>ZmHOX2a(1)                    <---------TOE1(2)                                <---------AHL20(2) >DEAR3(2)         --------------->AGL15 --------->ARR14(2)                            --------->AHL20(2) >MYB46(3)         <---------------AGL15--------->ARR14(2)                            <---------AHL20(2) ----AtMYB77  ------->TEIL           <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)         --------->AHL20(2) ---------ANAC58  ----------------->AGL3<---------GLK1(2)                  ----------->GT1<---------AHL20(2) ---------ANAC58  ----------------->AGL2<---------ARR14(2)    <----------DOF2      <---------AHL20(2)   gtccttgctccgtatgtatcaccaaaaacagaaattgtcccagattctgcgaatatgcagaatactttccatatgaattgtatatttatttatttatttt  13423900        <---------ANAC58                                   <----------DOF2 ---------DAG2                                          <-----------GT1 ----------DOF2     <----------DOF2                 <----------DOF2           ---------->DOF2 --------GT1<---------YAB1                    <---------AHL20(2)            <---------YAB1 -----------------ANAC81                     <---------AHL20(2)          --------->ICU4  <---------AHL20(2) --YAB1 <---------ANAC58                     --------->AHL20(2)   ---------->DOF2       <---------ATHB12   tactttttttgcttattattctcttttgctaaatgttttagttgatattaatttcttttaactttaggcaaagtcaatatgaaagtgctaatgaattgtt  13424000                 <---------YAB1            <---------ICU4                                                                          -            --------->YAB1                                                                         <-           <---------YAB1                                                                         <--          <---------ARR11(3)                                                                      ---          --------->ARR11(3)                                                        <---------YAB1<--         --------->YAB1                                                 --------->YAB1            ---       ------>MYB83                                                     <---------ICU4<---------ANAC58       ------>MYB46(1)                                                 <---------YAB1 <---------ANAC58    --------->ANAC58                                                   --------->ICU4 <---------ANAC46    --------->ANAC46                                                 --------->YAB1 --------->ICU4---    --------->ANAC58                          <----------ID1      --------->HSFB2a(2)--------->ATHB12  --------->ANAC58                  ------>ZmHOX2a(1)    --------->ANAC58      <------MYB46(1)    <--  --------->ANAC58                ----------->RAV1(2)    --------->ANAC58      <------MYB83     -----   tggcacaccaaatatcattacgatgatgcagcatgctcctgaagaaaaaaaacaaatgctagcaacttctataatcatggaaggtaatgcttggacagaa  13424100               --------->ARR14(1)              <---------ARR14(2)              --------->ARR11(1)                                                 <------ZmHOX2a(1)           <---------ANAC46                                                     --------->LBD16        --------->ALFIN1                                                      <-----------RAV1(2)  ------>ZmHOX2a(1)                                                     <---------ZAT14  <---------------AGL15                                                <---------MYB52(1) ----->ZmHOX2a(2)                                                     --------->LBD16 -----ZmHOX2a(2)                                                     <---------ANAC46 -------ARR14(3)                                                ------>MYB83  <---------LBD16 ------>ARR14(3)                                         ---------->DOF2<---------ZAT18 -------ARR14(2)                                        --------->ANAC46--------->ZAT14 ------>ARR11(3)             ---------->DOF2        xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)    <------ZmHOX2a(1) ------>ARR14(2)      <---------YAB1             <---------YAB1 -------->P--------->GLK1(1)<---------TOE2(3) -------ARR11(3) --------->MYB59               xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)       <---------TOE1(3) ------>ARR10 --------->ARR14(2)             --------->ARR11(3) ------>MYB46(1)--------->LBD16      -   gatcctataagtggtggattcggtatgattcaaaagctcatgtggaagattatgttacacaaagcctacctccgtgaactccaggagaagattaaggaag  13424200                                                                                <---------TOE2(3)                                                                              <---------AHL20(2)                                                                             --------->AHL20(2)                                                                          --------->AHL20(2)                                                                         <---------YAB1                                                                       -------->HAHB4                                                                       --------->ATHB12                                                                       --------->YAB1         >>>>>>>                                                                       <---------ICU4       <--------                                                                    <---------ICU4          <--------                                                                   <---------ATHB12         ---------              ------>MYB46(1)                                      <---------ATHB51         <--------              ------>MYB83                                         --------->ICU4          <---------ARR14(1) ----------->GT1                <---------ZAT6        <---------YAB1--------->YAB1         --------->GLK1(1) <----------ID1       <----------DOF2               --------->AHL20(2)--------->ICU4       <---------CCA1(2) ---------->GT1     ---------->ID1  <-------TEIL   <---------AHL20(2) <---------YAB1 ---------->DOF2   agaaggaaaaaaaaccagcctcgtctttatattagtgatacattgtagcatatattatttatgcatcaaataatgattatttaatgtaaaagcatatcta  13424300  Previous    Next  AGI:  At1g36000.1    Description:  LBD5 (LOB DOMAIN-CONTAINING PROTEIN 5). Identical to LOB domain-containing protein 5 (LBD5) [Arabidopsis Thaliana] (GB:Q9C8V8;GB:Q4PT06); similar to LBD8 (LOB DOMAIN-CONTAINING PROTEIN 8) [Arabidopsis thaliana] (TAIR:AT2G19510.1); similar to unknown [Picea sitchensis] (GB:ABK27054.1); similar to lateral organ boundaries (LOB) domain protein-like [Oryza sativa (japonica cultivar-group)] (GB:BAB91791.1); similar to hypothetical protein OsI_002474 [Oryza sativa (indica cultivar-group)] (GB:EAY74627.1); contains InterPro domain Lateral organ boundaries, LOB (InterPro:IPR004883) Range:  from: 13423779    to: 13424235    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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