Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                                  ----------->GT1                                                                               ----------->GT1                                                                               ======================                                                                               ------>ZmHOX2a(2)                                                                              <------ZmHOX2a(2)                                                                             --------->ARR14(2)                                                                             <---------ARR14(2)                                                                            --------->GLK1(1)                                                                            <---------GLK1(1)                                                                    ------>ZmHOX2a(2)                                                  ----------->GT1   =============HOX2a_HOX2a                                               --------->DAG2     <---------ARR14(2)        <---------ARR11(3)                    ---------->DOF2     --------->ARR14(2)        --------->ARR11(3)                 --------->ANAC58      <------ZmHOX2a(1) ---------->DOF2                           --------->ANAC58      =====================HOX2a_HOX2a<--- -------ANAC46                           <------ZmHOX2a(1)       ====================HOX2a_HOX2a<---- -TOE2(3)               <---------TOE2(3)==================================HOX2a_HOX2a--------->RVE1(1) -TOE1(3)        <------ZmHOX2a(1)      <----------ID1 <---------YAB1     <------ZmHOX2a(1)   <------   gagtaaagaagatgttgaaggattcaaaggtttttgagggataggacgaaaagggttataagtaagaggatcggaaggagatcggaaaatatcgaagcgg  13322900                                                                                      <---------MYB46(3)                                                                                     --------->ALFIN1                                                                                     <---------DEAR3(1)                                                                                     <---------AtMYB61                                             --------->At5g28300                    <-------GAMYB                                            --------->LBD16                        <---------DEAR3(2)                                            ----------->GT1                       <---------DEAR4(1)                                           <---------DEAR3(1)                     <---------ANAC46                                          <------NtERF2                           --------->ETT(1)                                         ------>NtERF2                            <---------At1g77200       <---------ANAC46                 --------->ANAC58                          <---------DREB2C(2)    --------->ALFIN1                    <---------DEAR3(1)                        <---------DEAR3(1) ===============HOX2a_HOX2a             --------->ANAC58                        <-----------HVH21 ------ANAC46           ---------->DOF2--------->SPL7                          <-----------RAV1(1) --NtERF2<------ZmHOX2a(1)           ----------->HVH21                         --------->ALFIN1 ---DEAR3(1)---------->DOF2         <------NtERF2                             <---------HSFC1(2)  <--   cgagtagtggaggagaaagggtgagagaaaggagaggcagggacgccggtgaattcttgaaccatagctctgaagttagaagtgtcggtggtgagaacag  13323000                                                                            --------->ALFIN1                                                                         <---------AtMYB61                                                                         --------->ALFIN1                                                                      --------->ALFIN1                                                                      <---------AtMYB61                                                                     <------ZmHOX2a(1)                                                                   --------->ALFIN1                                                                  <------ZmHOX2a(1)     --------->ALFIN1                  <---------ARR11(3)                            --------->ALFIN1  --------->ALFIN1            <---------HSFB2a(2)                             xxxxxxxxxxxxxxxx>smallRNA(se3)            --------->HSFB2a(2)                             <------ZmHOX2a(1)    <-------GAMYB      <---------ARR11(3)                                  --------->ALFIN1  <---------ANAC46      --------->ARR11(3)                               --------->ALFIN1  <---------DEAR3(1)     --------->GLK1(1)                    <---------HSFB2a(2)  <------ZmHOX2a(1)<---------MYB46(3)     <---------GLK1(1)                    --------->HSFB2a(2)--------->ALFIN1  <---------AtMYB61-----   <------ZmHOX2a(1)                     <---------ANAC46xxxxxxxxxxxxxxxx>smallRNA(se3)<------ZmHOX2a(1) -------REM1(1)   --------->ARR11(3)     <---------LBD16 <------ZmHOX2a(1)<---------MYB46(3)  <------ZmHOX2a(1)   ttgtaggagctcttcttgaagctcttgttcgttttctagggtttcgggaagaagagggaggaggaggaggaggaggtggtggaggttgaggagggaggag  13323100                                                                                         <------MYB46(1)                                                                                         <------MYB83                                                                                        <---------MYB46(3)                                                                    --------->ALFIN1 <-------GAMYB  <                        <---------At4g35610                        <------ZmHOX2a(1)--------->MYB111(1)                  <-----------HVH21                              --------->ALFIN1   <---------MYB46(3)                 <---------ANAC58                               <------ZmHOX2a(1)   <---------AtMYB61                 <---------ANAC58                             --------->ALFIN1      --------->MYB52(2)          <---------TOE2(3)                                  <------ZmHOX2a(1)      --------->MYB55(2)          <---------YAB1--------->At4g35610                  xxxxxxxxxxxxxxxx>smallRNA(se3) <--------     <------MYB46(1)  <------NtERF2                        --------->ALFIN1         --------->MYB111(2)     <------MYB83--------->ETT(2)                       <---------ANAC46           <--------P<-------     ----------->GT1<---------DEAR3(1)                 <---------LBD16<------ZmHOX2a(1) --------->MYB59    --------->MYB59<------NtERF2<---------MYB46(3)     --------->At4g35610        <-------GAMYB ----- ---->At4g35610  <---------ANAC46                     --------->MYB52(1) <------ZmHOX2a(1)<----------   atgagtttggttaagaatgtcgtcggagatgagattgttgacaaagtttagataagtagcggaggaggaggaggaggaagagagggttgttgggtcaccg  13323200                         <------MYB83                         <------MYB46(1)                       <--------P--------->MYB55(2)                      <-------GAMYB    --------->ALFIN1 --------->MYB55(2)  <------MYB46(1) <---------MYB46(3)  <------MYB83    --------->MYB55(2) --------->MYB111(2) --------->MYB111(2) --------->MYB46(2)  <---------MYB46(3)              --------->ARR11(3) --------->MYB111(1)<---------AtMYB61     ---------->DOF2          <-----------RAV1(2) --------P       <---------AtMYB61    ========================HOX2a_HOX2a -WRKY38(1)      --------->ALFIN1<---------MYB46(3)  <---------ARR11(3) --At5g28300     <---------DEAR3(1)   <------ZmHOX2a(1)------>ZmHOX2a(2)                <---------ICU4 ---->ZAT14   <---------DEAR3(1)--------->ALFIN1<------ZmHOX2a(1)----------->RAV1(1)   <---------YAB1 -HVH21  <------ZmHOX2a(1)    --------->ALFIN1  ==============HOX2a_HOX2a             <---------ARR11(3)   tagtaggtggaggaagacggtggtggttggaagggtgggaggaagaaagaggagtgatcttgtggagcaccagttgatgaagactcgtgatcatcgctcg  13323300          >>>>>>>>>>>>>>>>>LFY       <---------At4g35610       --------->At4g35610       <---------HSFB2a(1)              ---------->DOF2       --------->HSFC1(2)      <-------MYC3                         >>>>>>>>>TBF1             <------       <---------HSFC1(2)--------->GLK1(2)                <----------ID1                      -------       --------->HSFB2a(1)     ------->MYC3             ---------->DOF2        ----------->GT1-------   aagattgtaagcttccactgttacaagaatccatgtggacatgaaagaaacaagaacataaagacaagaagaagaagagaagggtttattttggtgaatc  13323400                                                                                                   <-                                                                                                 <---                                                                                                -----                                                                                               <-----                                             ---------->DOF2                                   ------                                        ----------->GT1                                        <-----                                        --------->ANAC58                                       ------                                        --------->ANAC58           ---------->DOF2            <------NtERF2 ---ARR14(2)                          ---------->DOF2            --------------->AGL15        ------- >TEIL                       <------ZmHOX2a(1)--------->DAG2     <---------------AGL15      <-------- -->GLK1(2)    <---------ANAC46 ---------->DOF2               <-----------GT1            <---------AtMYB61   tagggttttgagaaatgaagtgtatgggagaggagaaagagaaagcaaaaagttttttttttttttacttaaagaggttgaagggagaggtatggtgtcg  13323500                                   <---------ANAC46                                  <------NtERF2                                <---------DEAR3(1)                               <---------ANAC58                               <---------ANAC58                               <---------ANAC46                              <------NtERF2                             <---------MYB46(3)                             --------->MYB55(2)                             ------>NtERF2                            <---------DEAR3(1)                            --------->ALFIN1                           --------->ATERF1(1)                           <------NtERF2                           <-------GAMYB                          <---------ORA47(2)                          <---------ATERF1(1)                          <---------DEAR4(2)                          <---------MYB46(3) -----------CBF          --------->ALFIN1 ---NtERF2               <---------DEAR3(1) ->NtERF2                <---------DREB2C(2) ----ETT(2)             <------NtERF2                                                        <------- --->ETT(2)             --------->ATERF1(1)                                             --------->ARR11(3) ----bZIP60(1)          <---------ABI4(1)                                               <---------ARR11(3) --->bZIP60(1)        --------->ALFIN1                <---------YAB1                   --------->RVE1(1) -->ATERF1(1)         <---------DEAR3(1)        ------------>CBF                       --------->CCA1(1) -REM1(1)            <------ZmHOX2a(1)  ----------->GT1 ---------->DOF2         <----------ID1   <---   ccattgatggagagagatagagaggaggcggtggctggcgaagagtcaaactcaatatgaaagcgaaaacgagagagagagagagacaaatatctctttc  13323600                                                                            --------->YAB1                                                                      --------->ANAC58                                                                      --------->ANAC58                                                             --------->ARR11(3)     <---------AHL20(2)                                                             <---------ARR11(3)     --------->AHL20(2)                                                             --------->AHL20(1)     --------->AHL20(1)                     ----------->GT1                   --------->TOE2(3)    <---------ICU4  >>>>>>>>>EIN3      --------->ALFIN1    ---------->DOF2        <-----------GT1      --------->ANAC46     <-------TEIL ---DOF2            ------->TEIL      <-----------RAV1(1)   --------->AHL20(2) --------->AHL20(2) -------DOF2  ----------->HVH21       <---------ZAT6----------->RAV1(1)    --------->ICU4 <<<<<<<<<<<   tttctctagtggggatgtgacgaatgtgaaaagatagatagtgttggatttttacaacataaatatatacacacacaataatcaaataaaatatacattg  13323700                                                       --------->TOE2(3)                                                     <---------AHL20(2)                               <---------ARR11(3)<---------AHL20(2)       <---------ALFIN1        --------->ARR11(3)--------->AHL20(2)      <---------ZAT18          <-----------ARR10<---------AHL20(2)                               ----      --------->ZAT18        <---------AHL20(2) <---------AHL20(1)                               <---   <------MYB83  <---------------AtSPL8    --------->At5g28300                            --------->REM1(1)   <------MYB46(1)          --------->AHL20(2)  --------->AHL20(2)                       <-------TEIL  --------->MYB59--------------->AtSPL8   ----------->GT1                             <---------At4g35610 <<<<<<LFY      <---------ANAC46       --------->STY1(1)                              --------->At4g35610   gagtttggtccacttgtatcgggtactatataaaatcttacctagggtaaattattttcttaaaacaattctatccgaacaaaaatttagctacatgtaa  13323800  Previous    Next  AGI:  At1g35830.1    Description:  VQ motif-containing protein. similar to VQ motif-containing protein [Arabidopsis thaliana] (TAIR:AT5G65170.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO61733.1); similar to hypothetical protein [Vitis vinifera] (GB:CAN67718.1); contains InterPro domain VQ (InterPro:IPR008889) Range:  from: 13322426    to: 13323334    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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