Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                                --------->ZAT2                                                               --------->ANAC46            --------->ANAC58                         ---------->DOF2                       --------->ANAC58            --------->ANAC58                       ------>ZmHOX2a(1)                       --------->ANAC58          ---------->DOF2               <---------TOE1(1)                   <---------At4g35610        <---------ZAT2             <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(i2)  --------->At4g35610     <------ZmHOX2a(1)  ------- -----MYB52(1) <---------TOE2(1)                 <---------RAP2.3(3)--------->AtLEC2     <xxxxxxxxxxx   tagccttgatgctcagaacgaggtcctcaaaacgctcgatatggtctattggctgctcatgagacaagccatggaaaggatgctgggaaactaaagcaaa  13300900                                                                                                   <-                                      <------NtERF2                                                <-                <---------YAB1        <---------ANAC46                                             ==           --------->At4g35610       <---------MYB46(3)                                            --           <---------At4g35610      --------->ALFIN1                                               <-           <---------ZAT2   --------->HSFB2a(2)                                                    --      <---------ANAC58      <---------HSFB2a(2)                                         <xxxxxxxxxxxx      <---------ANAC58     <---------LBD16                                        <---------GLK1(1)<- <---------ANAC58         ====================================HOX2a_HOX2a    <-------GAMYBxxxxxxxxxxx ----------->RAV1(2)      ------>ZmHOX2a(1)<-------TEIL                      ======================== <---------ANAC58 xxxxxxxxxxxxxxxx>smallRNA(i)               <---------YAB1  <---------At4g35610<---- --->DOF2<xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)         ------>ZmHOX2a(2)     --------->At4g35610<---- xxxxxsmallRNA(s)<---------ICU4   --------->ALFIN1 ----------->HVH21       <-----------RAV1(2) ------   gtagcctggcttcagctcataatcgttcctctggaagggtgggggtacaatcgctgatcgattagcatagaataaggccagttgaaatctccaagagtac  13301000                                              <------NtERF2                                          <------MYB83                                         --------->MYB55(2)                                         <---------DEAR3(1)                                         --------->MYB111(2)                                         <---------AtMYB61    <---------PCF2                       --------->MYB46(2)  <---------MYB46(3)                     <---------MYB46(3) --------->ALFIN1                        --------->MYB111(1) --------bZIP60(2)                      <--------P --------TGA1a                          <---------MYB55(1)                           <---------At4g35610 ==============================================MYC_MYB                               --------->At4g35610 ------->TGA1a                  --------->ARR14(2)                                  --------->ARR14(2) --------O2                     <---------ARR14(2)                            --------->MYB52(1)   -- ------->O2--------->ZAT2       --------->GLK1(2)                 <-----------HVH21 ------->TEIL   <- xxxxxxxxxxxsmallRNA(se3)      <---------GLK1(2)       ------>NtERF2    <---------ETT(2)       ------ --------ANAC46               <------ZmHOX2a(1)    <---------ETT(2)     --------->ANAC58 <---------ANAC58 xxxxxxxxxx>smallRNA(fl3)     xxxxxxxxxxxxxxxxxx>smallRNA(si3)<---------MYB52(1) --------->RAP2.6(2)- ========MYC_MYB       --------->At4g35610<------MYB46(1)    <-------GAMYB --------->ANAC46  xxxxxxxx -----TOE2(1)     <------ZmHOX2a(1)    <-------GAMYB  <---------ALFIN1  --------->ANAC58 <---------ANAC58 -----TOE1(1)  <xxxxxxxxxxxxxxxxxxsmallRNA(fl3)--------->ETT(2)  <-----------RAV1(1)<---------ARR14(2) --->SPL7  <---------ZAT2 xxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)<-----------RAV1(1)  ------->GAMYB <-----   gacgtggttccctagctggaggaatagctgcaggaatctggggttggtgtcgatcgacacctctgttgtgtcgctcgacacaaccgcatctgcgttctgc  13301100                                                                                              -------                                                                                             <-------                                                                                             ------>ZmHOX2a(1)                                                                                           ------>ZmHOX2a(2)                                                                                     <------NtERF2                                                                                    ------>NtERF2                                                                       <---------ANAC58    ==========                                                                       <---------ANAC46  <---------ARR14(2)                                                                       <---------ANAC58 <xxxxxxxxxxxx             <---------ETT(2)                                         <---------LBD16----------->RAV1(2)           <xxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)                 <---------ZAT2      <------NtERF2         --------->ETT(2)         --------->ANAC58             <------NtERF2       --------->ANAC58        <------NtERF2        <------NtERF2                     <---------At4g35610 --------->ANAC58      --------->ALFIN1      <-----------HVH21   --------->ZAT2 --------->At4g35610------>NtERF2 --------->LBD16           <---------REM1(1)    <---------ZAT2xxxxxxxxxxxxxxxx>smallRNA(i) ========== ------->HSFB2a(2)       <------MYB83 ------>NtERF2           xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(i2)  < --------HSFB2a(2)       <------MYB46(1)--------->DEAR3(1)--------->HSFB2a(2)    <---------ANAC58   < --->At4g35610         <--------P <---------ETT(2)        <---------HSFB2a(2)    <---------ANAC58   < -------->LBD16  ------>NtERF2    --------->ANAC58     --------->ARR14(2)       --------->ATERF1(1) < xxxxxxxxxxxx>smallRNA(le3)<-----------RAV1(1)<xxxxxxxxxxxxxxxxsmallRNA(s)  <xxxxxxxxxxxxxxxxxxxxsmallRNA(fl3) ----At4g35610  <---------ALFIN1  ----------->HVH21    <---------ARR14(2) <----------DOF2--------->ARR14(2)   tcccgaaggtgtcgatcgacacctagttggtgtcgctcgacaccgagccctgctacgtttctggcagctaattgcgcattgaggcgcgcctgatcctcat  13301200      <-----------RAV1(2)     ------>ZmHOX2a(1)  <------NtERF2 <---------SPL7 -->ATHB12     <---------YAB1 --YAB1      <------ZmHOX2a(1)                                         <---------CCA1(2) ===================HOX2a_HOX2a                                     ------>ZmHOX2a(1) xxxxsmallRNA(s)<---------HSFC1(2)                                 --------->TOE2(3) ===========HOX2a_HOX2a                                   xxxxxxxxxxxxxxxx>smallRNA(s) ---------ANAC58--------->HSFB2a(1)                      <---------ANAC58                           < ---------ANAC58<---------HSFB2a(1)               xxxxxxxxxxxxxxxx>smallRNA(i)                      - ---------ANAC46--------->HSFC1(2)    <---------YAB1     <---------ANAC58                ------>ZmHOX2a(1) ---------RAP2.6(2)    --------->AtLEC2           <xxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)------>ZmHOX2a(1)   tggcgtcctcagggaggatgattccatgctcatccaatctctgattagcctcattgtaggcttgcccatcctcatctctcaaaactccttcctcatcaag  13301300                                              <---------ANAC46                                              <---------ANAC58                                              <---------ANAC58                                             <-------TEIL                                             <---------ZAT18                                          <---------DEAR3(2)                                          <---------MYB46(3)                                          <------MYB46(1)                                          <------MYB83                                         xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)                                         --------->ALFIN1                                         --------->MYB111(1)                                         <---------DEAR3(1)                                         <---------AtMYB61                                         --------->MYB111(2)                                         <---------MYB46(3)                                         --------->MYB55(2)                                         --------->MYB46(2)                                         <                                        <---------MYB55(1)                                          -                                        <--------P                                                 <-               --------->ATHB12         <---------MYB52(1)                                         <-               <---------ICU4          <-------GAMYB                                            <----              --------->MYB46(3)      <---------MYB46(3)                           <<<<<<<<<<WRKY26<-            <-----------GT1          <---------ANAC58                            >>>>>>>>>>WRKY26<---      <----------DOF2                <---------ANAC58                 --------->ZAT14          <----- ---------At4g35610                  <---------RAP2.6(2)          <---------HSFB2a(2)         <------ -------->At4g35610  *TSS           <---------LBD16               --------->HSFB2a(2)      ------>ZmHOX2a(1)   tctgatgactttgttaaccattgctaatctctaagttttgcggttggtgcgttcaagttttcccaagtccagaacagacaagttgatcaactccttctgt  13301400          <---------ANAC58  <---------At4g35610 ---------ZAT18 -------->ZAT18 --------ANAC58 --------ANAC58 -----MYB52(1) --------ANAC46                                                                   --------->ANAC58 ------ANAC46                          ---------->DOF2                            --------->ANAC46 --GAMYB  <---------ANAC58  ----------->HVH21                        ----------->GT1  <---------ARR11(3) -----RAV1(1)             --------->ANAC46                         ---------->DOF2--------->ANAC58   tgtgtgctccttgtttgcctaggcatacacatgacacacagaaaagaagaaacatgtgagtaacaaaataaaagtaaaaactagacgaaatctctaaact  13301500                                   <------NtERF2                                  ------>NtERF2                                 --------->DEAR3(1)                                --------->RAP2.3(1)                               ------->GAMYB                         ------>MYB46(1)                               <---------ATERF1(1)                   ------>MYB83                               <---------RAP2.3(1)                   -------->P                              <---------DEAR3(1)                   <---------MYB59                            --------->MYB52(1)              <----------DOF2                   --------->ARR11(3)                      <---------ANAC58                   <---------ARR11(3)                      <---------ANAC58             <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)     xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)      --------->YAB1  <----------DOF2           ----------->GT1 <-----------GT1   aaactcaatggtgactcccaagaactttggcaacggcgccaaatttgatatggttcaaattgctttaaacctactctctcaaataagagaacaattgcag  13301600                                                                            <---------WOX13(1)                                                                          <--------ATHB1                                                                          --------->ATHB12                                                                         --------->ICU4                   ---------->DOF2                                       <---------YAB1                 ------>ZmHOX2a(1)         --------->At4g35610   <---------ZAT2    --------->AHL20(2)                --------->TOE2(3)  --------->ANAC58              --------->ZAT2    --------->AHL20(1)            --------->GLK1(1)      --------->ANAC58         <---------TOE2(3)      <---------AHL20(2)   <---------TOE1(3)               --------->ANAC46   --------->ICU4--------->ANAC58            -----   <---------TOE2(3)            <---------ZAT18       <---------YAB1--------->ANAC58          -------   tatttaagggtcgaatttcctcaaagtttttttgttcacacaatgagttgaatgtcaagattaagctagcagggaatgattgaaataaaatataaacaaa  13301700                                            <---------HSFB2a(2)                     ------>ZmHOX2a(2)                                           ============================HOX2a_HOX2a <------ZmHOX2a(2)                    <---------ANAC46       ------>ZmHOX2a(2)                      --------->AGP1                    <---------ANAC58      =============================HOX2a_HOX2a--------->ARR11(3)                    <---------ANAC58      --------->CCA1(2)                       <---------AGP1                   <------MYB46(1)        <------ZmHOX2a(2)              <---------MYB46(3)                   <---------MYB46(3)    <---------AGP1 <---------ARR14(2)        <---------ARR14(2)<                   <------MYB83          --------->AGP1 --------->ARR14(2) <--------P               <               <---------MYB46(3)        --------->ARR11(3)          --------->ATHB12     ---------->DOF2               --------->ATHB12          <---------ARR11(3)     <------ZmHOX2a(1) <---------ARR11(3)-              <-------TEIL               --------->ARR14(2)     ==========================HOX2a_HOX2a ---------->DOF2 <---------WOX13(1)      <---------ARR14(2)  <---------LBD16 --------->MYB52(2)  <--- ------>GT1  <--------P   <---------DOF5.7(2)  <------ZmHOX2a(1)===========================HOX2a_HOX2a --->DOF2<-----------RAV1(2)         ---------->DOF2   xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)     <---   gtaaaaagacaccaggttgattggttgtaaacgatgaaataaagatctaggaatagggtattctcaggaaactattggttagtagatctaatgaaagata  13301800  Previous    Next  AGI:  At1g35790.1    Description:  transposable element gene. gypsy-like retrotransposon family (Athila), has a 1.3e-42 P-value blast match to GB:CAA57397 Athila ORF 1 (Arabidopsis thaliana) Range:  from: 13296402    to: 13301321    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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