Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                <---------ICU4                                                    -----                       ----------->GT1                                                          -----                 ------>ZmHOX2a(1)                                                            <------                --------------->AGL15                                                 ---------->DOF2                --------->TOE2(3)                                                  <----------ID1                <---------------AGL15                                            ----------->GT1-----               <-----------------AGL3                                   <----------DOF2    --------->MYB52(1)             <-----------GT1 <---------YAB1                        ----------->GT1 <---------ANAC46<- ----------DOF2<-----------------AG         ---------->DOF2 ---------->DOF2     <---------DEAR3(1)---   aactttctaaatttttatcctcatatggataatttttgcttcatataaaagtttttgaattccaaagaaatgtgatttagggatggcgaaaagaaaccga  13209500   ----------------->AGL2                                                 ------->GAMYB ------>MYB83                      --------->YAB1                       -------->P ------>MYB46(1)             ----------->GT1                           ------->GAMYB ---->MYB52(1)         <---------AHL20(2)                             --------->MYB46(3)            - ->MYB46(1)          --------->ANAC55(2)                            <-----------GT1                -- ---MYB59            --------->ANAC58                           <---------YAB1               <------- ->MYB83      --------->GLK1(1)   <---------YAB1           --------->HSFB2a(1)       --------->TOE2(3) --------MYB59<---------GLK1(1) --------->YAB1      ----------->GT1 --------->YAB1------>MYB46(1)<--- ------>DEAR3(2)     --------->ANAC58       ----------->GT1<---------HSFB2a(1)    ------>MYB83   ----   accgaaccaaaatcggatttcataagtaattttgttataatacaaactgtgaaactgtagaaaattcttataacaacccaaaccaaatctaaattcttat  13209600                                  <------MYB46(1)                                  <------MYB83                              --------->ARR14(2)                              <---------ARR14(2)           ------>MYB46(1)   ------>MYB46(1)                                                   <-----   ------->GAMYB           <---------------AGL15                                               ------ --------->ANAC58          --------------->AGL15                                          <-------TEIL --------->ANAC58         ----------------->AGL3                               <---------AHL20(2) -------->P------>MYB83   <-----------------AGL3                              --------->AHL20(2) ------>GAMYB             ----------------->AG                     <---------YAB1     --------->DAG2 ------->MYB46(3)         ----------------->AGL1                  --------->AHL20(2)  <-------------- --YAB1  <---------MYB59  <-----------------AGL2   --------->MYB46(3)  <-----------GT1--------------- --------GT1  --------->TOE2(3)   ----------->GT1<-----------GT1 <---------AHL20(2)  ---------->DOF2 ----->YAB1<---------CCA1(2) ------>MYB83 ----------->GT1  --------->YAB1     <---------AHL20(2)   aacaacccagaccaaatctcaaattgaaaccaaatttggtgaatttgtaattaaccaatattcagaattaatataactaattaaatataaagtacattta  13209700                                                                                                 ----                                                                                                <----                                                                                              <------                                                                                              <------                                                                                             <-------                                           <---------YAB1                               --------->ARR11(3)                                        <---------YAB1                                  <---------ARR11(3)                                       <---------AHL20(1)                               <---------AHL20(1)     --------->ZAT14                   <---------AHL20(2)                               --------->AHL20(2)   --------->ANAC46                    --------->AHL20(2)                               --------->AHL20(1) ----AHL20(2)                          --------->AHL20(1)                               <---------AHL20(2) --->AHL20(2)                         --------->YAB1                                <---------AHL20(2) -AtSPL8      ---------->DOF2--------->MYB111(1)                              <---------ANAC46------- >AtSPL8--------->ZAT6       ----------->GT1                                <---------ANAC46<--------   aatacactaaacactataaagagattaagagtagttagaattataatttttgtcaaaaatcgaacaaaaccaaaattgatgtgtatataatatattactt  13209800 ----->ATHB12 -----AHL20(2) ---ANAC55(2)        ----------->GT1                          <-----------GT1                -------- ---------AGL15    ------->TEIL                             --------->AHL20(2)          --------->YAB1 ----------AG<---------ARR11(3)                  --------->ANAC58                       ----------->GT1 -->ANAC55(2)--------->GLK1(2)     ---------->DOF2<---------ZAT2------------>CBF   <-------TEIL   --- ---GT1      --------->ARR14(2) ----------->GT1  --------->ANAC58                  ------------>CBF   aattggaaaacccaaaatctgaaccgaaataaaccggtaaaccgaaattgcaagcttagaaattaaaccaatttgaagacaggggtacaatggtaatttt  13209900                          <---------ARR14(2)                          --------->ARR14(2)                        --------->LBD16                                                             <                       <---------ANAC46         *TSS                                                -                      <---------LBD16          ---------->DOF2                             <------NtERF2                  --------->ZAT6          <---------ZAT2                                 <---------ANAC58         <---------ARR14(2)               --------->At4g35610                            <---------RAP2.6(2) ->ICU4  --------->ARR14(2)               <---------At4g35610   <---------At4g35610      <---------ANAC58 ------->DOF2<------ZmHOX2a(1)            --------->ZAT2        <---------ZAT18          <---------ANAC46   caaaggaagtggataggataacactgcggatttattctccgtcgagctccaaagtctcgagcttagagctctctctcagtcgaaaacaatggcgtcttct  13210000                --------->At4g35610                --------->ZAT14  <---------ICU4                   --------->ARR14(2)                <------------------------ANAC81                   <---------ARR14(2)                <---------ZAT14 <---------YAB1                --------->ZAT6 ----------->HVH21<----------DOF2--------->ATHB12          >>>>>>>ZML2   --------->ZAT14 --------->DEAR3(1)           --------->At4g35610          <---------HSFB2a(2)                ------- ---------At4g35610           <---------At4g35610  --------->ANAC46   ------>ZmHOX2a(1)       <------ -------->At4g35610    <----------DOF2    <-----------HVH21--------->HSFB2a(2)          --------->TOE1(3)   tcagcgacgctctctctctgctctactttctctgctcattgcaatgtcaattctcgccgttctagcactatcctctgttctctctctaaaccttcgctta  13210100                                                     --------->SPL7                                                 --------->HSFB2a(2)                                             --------->O2                                             <---------O2                                             --------->TGA1a                                             <---------TGA1a                    <---------LBD16                                  <---------ALFIN1  --------->ARR14(2)      --------->ARR14(2)    <--                        <----------DOF2   <---------DEAR3(1)             --------->LBD16          ---                        ===============================bZIP_DOF  <-----------HVH21  <---------ARR14(2)                    --------->GLK1(1)     --------->DEAR3(1)    --------->DEAR3(1)--------->LBD16 <-- -------->AGL15     <---------GLK1(1)  <---------ANAC46       <---------At5g28300--------->ANAC46 --- ----DOF2   ----------->HVH21  ------>ZmHOX2a(1) <---------HSFB2a(2)<---------DEAR3(2)       <------NtERF2   atttggctaaacctctgactggatttctttctccttccactgcgtcgacgtctcgaaccgcattcaccgtcgctccgaaattcgcggaatcagtcgtcga  13210200                                 <---------MYB46(3)        <---------TOE2(3)                    -----      --------->LBD16        <---------AtMYB61       <---------ARR14(2)                        ------    <---------LBD16          --------->ALFIN1      <---------MYB46(3)                          <-----   ------->TEIL          <---------At4g35610      <---------TOE2(2)                         <--------  <---------ARR14(2)     --------->At4g35610   <---------ANAC46                   <---------GLK1(2) -------At4g35610        <---------ZAT2       <---------LBD16    --------->DAG2   --------->ARR11(3) ------>ZAT2             --------->ZAT2    <---------HSFC1(2)   ---------->DOF2   <---------ARR11(3) -------ZAT2 --------->MYB52(1) <---------AtMYB61 <---------TOE1(2)              <---------RVE1(1) ------>At4g35610 --------->GLK1(1)        --------->HSFC1(2)<------ZmHOX2a(1)  ----------->ARR10   agctgaaccggagactaccgatatcgaagctgtggtggtttccgatgtttcggaggttactgaggaaaaagctaaacgagaagagattttcgctgttatt  13210300                                                                                 <---------WOX13(1)                                                                               --------->ATHB12                                                                             <--------P                                                                             <---------WOX13(1)                                                                           <------MYB83                                                                           <------MYB46(1)                                                                           <---------MYB46(3)                   --------->ANAC58                                       <---------AtMYB61    <---------At4g35610 <----------ID1                                <------MYB46(1)    <---------ZAT2 --------->ANAC46                                   <------MYB83 ---->YAB1         --------->ANAC58                        <---------GLK1(1)<-------GAMYB --->ICU4       --------->TOE1(2)                      --------->HSFB2a(2)--------->MYB59 ----YAB1       --------->TOE2(2)            <---------MYB46(3)      <---------TOE2(3) -MYB52(1)     --------->YAB1 <---------GLK1(2)     <----------DOF2  --------->MYB59    ------->TEIL   atggtgagcttgttgaatcatacgaaacaacaaattctcaatttcggtgtttagcttttggaattcggaattaggtttggttgattgatgaatttgattt  13210400  Previous    Next  AGI:  At1g35670.1    Description:  ATCDPK2 (CALCIUM-DEPENDENT PROTEIN KINASE 2); calmodulin-dependent protein kinase/ kinase. Identical to Calcium-dependent protein kinase 11 (CPK11) [Arabidopsis Thaliana] (GB:Q39016;GB:Q949P0;GB:Q9LQH7); similar to CPK5 (CALMODULIN-DOMAIN PROTEIN KINASE 5), calmodulin-dependent protein kinase/ kinase [Arabidopsis thaliana] (TAIR:AT4G35310.1); similar to CPK4 (calcium-dependent protein kinase 4), calmodulin-dependent protein kinase/ kinase [Arabidopsis thaliana] (TAIR:AT4G09570.1); similar to CDPK9 (CALCIUM-DEPENDENT PROTEIN KINASE 9), calmodulin-dependent protein kinase/ kinase [Arabidopsis thaliana] (TAIR:AT5G23580.1); similar to unnamed pr Range:  from: 13206593    to: 13209464    Orientation: Forward Links:  TAIR  MIPS    AGI:  At1g35680.1    Description:  50S ribosomal protein L21, chloroplast / CL21 (RPL21). Identical to 50S ribosomal protein L21, chloroplast precursor (RPL21) [Arabidopsis Thaliana] (GB:P51412;GB:Q9SMM2); similar to NFD1 (NUCLEAR FUSION DEFECTIVE 1), structural constituent of ribosome [Arabidopsis thaliana] (TAIR:AT4G30930.1); similar to unknown [Populus trichocarpa] (GB:ABK94900.1); contains InterPro domain Ribosomal protein L21; (InterPro:IPR001787) Range:  from: 13209948    to: 13211630    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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