Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                                                     --                                                                   <---------HSFB2a(2)            ---                                                                   --------->HSFB2a(2)            <--                                             --------->At4g35610<---------YAB1                    ---                 --------->LBD16        --------->ETT(2)    <---------AHL20(2)                    ---                --------->LBD16         <---------ETT(2)<---------RVE1(1)                         --- ----TEIL     <---------LBD16      --------->At4g35610  <---------CCA1(1)                         --- ------->AtSPL8--------->LBD16     <---------At4g35610 --------->ARR11(3)             <---------ZAT18   acaaaattccacattcccccgagtttctaacaattggagctgtagacatctcaatacgatattttttttatagaaaaatgttgtctagtgaacatacaat  13164100                                                   <-----------HVH21 ------->TOE1(2)            ------>ZmHOX2a(2)--------->ZAT18 ------>ANAC46        <-------GAMYB          <---------ZAT18 -------ANAC55(2)    <---------MYB46(3)    --------->ZAT18               <---------ANAC55(2) ------>ANAC55(2)    --------->MYB52(2)    <---------ZAT18               --------->ANAC55(2) ------>ANAC55(1)  <---------MYB52(1)   ---------->DOF2             --------------->AtSPL8 ------>ANAC58<-----------GT1   <-----------------AGL3 <---------ANAC55(2)                     <----- ------>ANAC58--------->MYB52(1)----------------->AGL3 --------->ANAC55(2)                     <-----   acgtaagaaaaacaaataacagtttgttgatcgctccaaaattagagcgctcttgtcacttattcagtagtcagtacataattctaatgcaagtctatat  13164200                --------->ANAC58            --------->YAB1           <---------AHL20(2)           <---------YAB1  --------->YAB1          --------->AHL20(1)          --------->AHL20(2)                                                      <-----------GT1          <---------AHL20(1)  <-----------GT1                            <---------ANAC46    -------- ----ARR11(3)   --------->ANAC46                                         <---------ANAC58    <------- ----AHL20(1)   --------->ANAC58   <---------ALFIN1 ------->TEIL         <---------ANAC58   <-------TEIL   attccaaaccaatataataagccatgtaatagtaactccacagtttccaaaatgaaccttgtaaactaatccaaggcttgtatttttccagtgatacata  13164300                                                                                          --------->ZAT6                                                                                      <------ZmHOX2a(2)                                                                                   --------->LBD16           <---------ANAC55(2)                                                    --------->HSFB2a(2)      ----------->GT1                                                             <---------HSFB2a(2)    <---------GLK1(2)                                           <------ZmHOX2a(1)<---------LBD16  <---------ATHB12    --------->MYB52(1)                    ---------->DOF2     <-----------GT1 ->ANAC55(2)         --------->ICU4            <---------ANAC46 =============================HOX2a_HOX2a --ANAC55(2)    ----------->GT1         ---------->DOF2   <---------YAB1       <-----------GT1  <----   accaaagattgttacatgaagtaataactgagaaaacttactgaaagttgcctcgacatcatcaaaggatagaattgtgtttttcccgatcaacactact  13164400          --------->ZAT2          <---------ZAT2   ------->GAMYB          <---------At4g35610     <---------YAB1          --------->At4g35610     --------->ICU4     --------->ANAC58    ------>MYB46(1)     --------->ANAC58    ------>MYB83                             <----------DOF2   <---------ATERF1(1)  --------->MYB52(1)                   --------->CCA1(2)  --------->DEAR3(1)    ----------->RAV1(1)                 <---------ARR11(3)              <-------- ------DOF2         <-----------GT1--------->ATHB12       <---------YAB1                  *TSS      <   ttcgccgaagccagcttacaaattaccaacagagacatgattgtaatccaactatagttcatgatatgctttctctcagttttagtcgaatcgaagctcg  13164500                                                                                                <----                                                 --------->HSFB2a(1)                       --------->ANAC58                                                 <---------HSFB2a(1)                    --------->LBD16                                 --------->CCA1(2)                                  <---------ARR14(2)                                <---------ARR14(2)                                --------->ANAC58                                <---------ARR11(3)                                --------->ANAC58  <                       ------>MYB46(1)           <---------HSFC1(2)           --------->ANAC58 ------                       ------>MYB83              --------->HSFC1(2)           --------->ANAC58-------                     --------->AtMYB61--------->ETT(2)                      ---------->DOF2--------->ANAC58             --------->ANAC58   --------->ARR14(2)                       <---------TOE2(3)--------->SPL7 -ZAT2       --------->ANAC58   --------->ARR11(3)                     ---------->DOF2<---------LBD16 -----------GT1      <---------MYB59  <---------ETT(2)              <----------DOF2 --------->ARR14(2)   tattaccacaacaacatgccaaaccaaaccccaagatatgtcgagagaagaagtttctaaatttctactgcattaaaggaaagcaagacccggacgtaaa  13164600                         <---------TOE2(3)                <---------ICU4                <--------HAHB4                --------->ATHB12       <---------HSFB2a(2)       --------->HSFB2a(2)   <---------ANAC58    <---------AHL20(2)   <---------ANAC58 <---------AHL20(2) <---------ARR14(2) --------->AHL20(2) --------->ARR11(3)--------->AHL20(2) --------->ARR14(2)<---------AHL20(2) ------->TEIL   -------->ATHB1                                                                    --- -----ANAC46    --------->YAB1                                             --------->YAB1       <---- ---------CCA1(2)--------->TOE2(3)                              <-------MYC3                <-------TEIL --->DAG2      --------->ICU4            <-----------GT1        ------->MYC3              <---------ARR14(2) --->DOF2     --------->GLK1(2)        --------->YAB1  --------->YAB1  <---------AHL20(2) --------->ARR14(2)   gtgtatcttgcagaagaatcattaatttatgtagttggcattaataccaattgtgtttcataaacatgtgtgtttaatcaaaatcgaaaacatatacgta  13164700                             xxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)                            <---------PCF2                            <---------PCF5              <---------ARR11(3)                       --------->YAB1                   --------->ARR11(3)                       --------->ATHB12                --------->YAB1                       <---------ICU4                 <---------YAB1                       -------->HAHB4               --------->YAB1                      <---------YAB1               <---------YAB1                      --------->ICU4             --------->YAB1                    --------->YAB1              --------->AHL20(2)                      <---------AHL20(2)                    -------->HAHB4              <---------AHL20(2)                     --------->AHL20(2)                    <---------ICU4           --------->AHL20(2)                        <---------AHL20(2)                   <---------ATHB51          <---------AHL20(2)                    --------->ICU4                   --------->ICU4           <---------AHL20(2)                   --------->YAB1                 --------->YAB1             --------->AHL20(2)                   ---------->DOF2                <---------AHL20(2)      <---------AHL20(2)                   <---------AHL20(2)                --------->AHL20(2)      --------->AHL20(2)                   --------->AHL20(2)               <---------AHL20(2)       --------->AHL20(1)                  --------->AHL20(2)      - -------->GT1  --------->AHL20(2)      --------->AHL20(2)                   <---------AHL20(2)    xxx ---TEIL    --------->AHL20(2)  <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)    --------->AHL20(2)<---------AHL20(2)   cagtagaaactctataaattaataatgatgggaccatgaaattttattaatttataatgatattaatctatactataaattaataaagattaatttatcc  13164800                                                             --------->TOE2(3)                                                            --------->ANAC55(2)                                                            --------->ANAC46                                                       <---------ICU4                                                      --------->ICU4                                                <---------HSFB2a(2)               <---------AHL20(2)         --------->AHL20(2)----------->GT1               --------->AHL20(2)         <---------AHL20(2)<---------ANAC46              --------->AHL20(2)         --------->AHL20(2) <---------ANAC55(2)              <---------AHL20(2)         <---------AHL20(2)<---------TOE2(3)            --------->TOE2(3)  ----------->GT1  --------->HSFB2a(2)          --------->ICU4   --------->AHL20(2)<---------AHL20(2)                                  ----    ----------->GT1      xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)                                  ----- -------->AHL20(2)<---------AHL20(2)   --------->TOE2(3)  <-----------GT1              <---------AHL20(2) xxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)  --------->ICU4   --------->AHL20(2)          <----------DOF2<---   gataaattgataaatattaatttatccgataaattgataaatattaatttatagaaatatttacgtaaaatacaatactaaattctttttaaaatgtttc  13164900                                                                                                    <                                               <---------RVE1(1)                                    -                                              --------->ARR11(3)                                    <                                              <---------GLK1(2)                                     <                                       --------->AHL20(2)              <---------ARR11(3)          <-                                       --------->AHL20(1)      <---------ANAC58                    <-                                       <---------AHL20(2)      <---------ANAC58         --------->TOE2(2)                                       <---------AHL20(1)      <---------ANAC46         --------->TOE1(2)                                      --------->AHL20(2)     <---------AHL20(2)       <---------ARR14(2)                                  <---------AHL20(2)     <---------AHL20(2)           --------->ARR14(2)                          ----------->GT1     <---------ARR11(3)       <---------AHL20(1)       -----                        <---------ANAC46<---------YAB1   --------->AHL20(2)           <---------ARR11(3)                 <---------AHL20(2)   --------->YAB1    <---------AHL20(1)            --------->ARR11(3)            ------>ZmHOX2a(1)     --------->AHL20(2)    --------->AHL20(1)           --------->GLK1(1)           --------->TOE2(3)      --------->AHL20(1)    --------->AHL20(2)           <---------CCA1(2) ----------->AGL15<---------YAB1 <---------AHL20(2) --------->AHL20(2) --------->ARR11(3)      ------ ---->TOE2(3)  <---------YAB1    --------->AHL20(2) <---------AHL20(2) --------->AHL20(1)  --------->ANAC46 ------------AGL15<---------AHL20(2)  <---------AHL20(2)<---------AHL20(2)        --------->LBD16 <--   ttaatttagttttccttatttttattgtttgtaaattaaattatattagattttttaatttattttcttgtaagatattgtgtccgtatatctacgacgt  13165000  Previous    Next  AGI:  At1g35630.1    Description:  protease-associated zinc finger (C3HC4-type RING finger) family protein. similar to protease-associated zinc finger (C3HC4-type RING finger) family protein [Arabidopsis thaliana] (TAIR:AT1G35625.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO15460.1); contains InterPro domain Protease-associated PA (InterPro:IPR003137); contains InterPro domain Zinc finger, RING/FYVE/PHD-type (InterPro:IPR013083); contains InterPro domain Zinc finger, RING-type; (InterPro:IPR001841) Range:  from: 13162944    to: 13164490    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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