Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                        --------->AHL20(2)                  --------->AHL20(1)                  <---------AHL20(2)                  --------->AHL20(2)                 --------->AHL20(2)      --------->ATHB12              <---------AHL20(2)         <---------AHL20(2)             <---------AHL20(2)          <---------ICU4            <---------YAB1               --------->ATHB51          --------->YAB1                 --------->AHL20(2)          <--------HAHB4                --------->ICU4          -------->ATHB1              xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)          -------->HAHB4              --------->YAB1                   --------->AHL20(2)          <---------ICU4              <---------ICU4                   <---------AHL20(2)          --------->ATHB51           <---------ATHB51                  --------->AHL20(1)         <---------ATHB51            <---------AHL20(2)            <---------AHL20(2)         --------->ICU4              --------->ICU4          --------->TOE2(3)         <---------YAB1    <---------AHL20(2)              --------->ARR11(3)      <---------AHL20(2)  <---------AHL20(2)   <---------ANAC58    --------->AHL20(2)      --------->AHL20(2)  --------->AHL20(2)   <---------ANAC58    <---------AHL20(1) <---------AHL20(2)   <---------AHL20(2)<---------YAB1     <---------ARR11(3) ------AHL20(2)  <---------AHL20(2)  --------->AHL20(2)   <---------CCA1(2) -----YAB1<---------AHL20(2)        <---------AHL20(1)  --------->AHL20(2)                     ------ ----AHL20(2)--------->AHL20(2)  --------->AHL20(2)     <---------AHL20(2)        <---------YAB1 ----   tattttttttaattattaattttattaattaaatataaaataattatttgagtgctatttatatcttaaaaaattttttatgctatttttgcctaaaact  13089600                                                               --------->AHL20(2)                                                               <---------AHL20(2)                                                            --------->AHL20(2)                                                   --------->ARR11(3)             ---------->DOF2--------->YAB1         <---------ARR11(3)<---------YAB1            --------->AHL20(2)                     <---------AHL20(1)<---------AHL20(2)     ---------        <---------------AGL15                 --------->AHL20(2)   <---------ICU4           ---------        --------------->AGL15            <---------MYB52(1)--------->AHL20(2)              <---------ATHB12 --->TOE2(3)<---------AHL20(2)  <-----------GT1<---------AHL20(2) --------->ICU4       ------------>CBF ----->AHL20(2)  <---------GLK1(2)     <---------MYB46(3)  <---------ATHB12        <---------TOE2(3)   taaatatgtgctatttaaagaatttctctataaaaaaccattcgttgatttaatatatccaataaataaatattattagctatctaatgttcaatgaaat  13089700                                 <---------AHL20(2)                                --------->AHL20(1)                  <----------DOF2                                <---------AHL20(1)           <-----------GT1                      ----------------->AGL3               <-----------GT1                 <---------HSFB2a(1)         <---------AHL20(2)    <---------DAG2      --------->AHL20(2)      <---------AHL20(1)         --------->HSFB2a(1)       ------------>CBF     --------->AHL20(2)       --------->AHL20(1)         <---------HSFB2a(1)  <-----------GT1 >YAB1<---------AHL20(2)     --------->AHL20(2)         <---------KAN4(2)    <-----------GT1   ------ >AHL20(2)       --------->HSFB2a(1)        --------->AHL20(2)  <---------ALFIN1 <----------DOF2   ttagagatttaattttgaaatgttcccataaatatatatttgcctatttaatatagagaattttctccaccttttttttttaactttcaattttcttcca  13089800                                                                           <---------ARR14(2)       ------>NtERF2                                                       --------->ARR14(2)       <------NtERF2                                                     ---------->DOF2      --------->ANAC58                                                <---------MYB59      --------->ANAC58                                                --------->TOE1(3)         -----      --------->ANAC46                                ------>NtERF2   --------->TOE2(3)      <-------TEIL     <---------LBD16                                 <----------ID1 ------->TEIL       ---------->DOF2  <-----------GT1                             <---------MYB52(2)--------->ANAC46 --------->GLK1(1) --->HSFB2a(2)                              ---------->DOF2  --------->MYB46(3)--------->LBD16 ------   aaatttgcccgccattctctgtgtctcttcgtctaagggtttcttccaaagaacgacgacaaaaccactgaacctaaaatccgaaatccaaaagattcat  13089900                                                                  --------->ARR14(2)                    <---------------AGL15                         <---------ARR14(2)                    --------------->AGL15                       --------->LBD16                   ----------------->AGL1                      --------------->AGL15                   ----------------->AG                       ----------------->AGL2                   ============================================================MADS_MADS                   ----------------->AGL2                     <---------LBD16                   ----------------->AGL3                     --------->LBD16                   ------------>CBF                           <-----------------AGL1           ---------->DOF2                           ----------->GT1         --------->DOF5.7(2)       <-------TEIL      --------->ANAC58        --------->TOE2(3)         <-----------GT1    --------->ANAC55(1)   ------>ZmHOX2a(2)        --------->TOE1(3)      ----------->GT1       --------->ANAC46     <------ZmHOX2a(2)       ----------->GT1       ---------->DOF2         <---------ANAC55(2) --------->ARR14(2) ---->AtLEC2  <---------------AtSPL8                 --------->ANAC55(2) --------->ARR11(3) --->TOE1(2)  --------------->AtSPL8                 --------->ANAC58    <---------ARR14(2)  --------   gcgaaaaaatcgttaaagagtaccaatttcagaaagttacattcttacagagaacaagtaattccccagaaatgggatctagggttccaatagaaaccat  13090000                                                      <---------YAB1                                                   <---------YAB1                     --------->GLK1(1)         <---------ANAC46                     --------->AHL20(2)                    <------ZmHOX2a(1)        <------NtERF2           <----------DOF2<---------AHL20(2)              ------>ZmHOX2a(1)      <---------DEAR3(1) <----------DOF2      <---------AHL20(2)            <---------------AGL15  <- ->MYB46(3)        <---------CCA1(2)          <---------AHL20(1)           <-----------------AGL1  --   cgaagaagacggcgtaagttcaaatctctttctgcgttattgaatcaatttttttgattattcaacttctgggtttttctcctacaggaattcgattggg  13090100                                                                                                   <x                                                                                                  <--                                                                                                <----                                                                                                <----        ---------->DOF2                                                                        <-----       <---------WRKY12                                                                        <-----       <---------WRKY38(1)                                                                     ------  <---------At4g35610                  <---------MYB52(2)                                 -----------  --------->ZAT2                     --------->TOE2(3)                                    <----------  --------->At4g35610               <----------ID1        <-----------TGA1               ------------ ----------->RAV1(1)    <---------ANAC58                  <-----------HVH21              <----------- --------At4g35610      <---------ANAC58             <<<<<<<<<TBF1          <----------DOF2--------->WOX13(1) ------->At4g35610      <---------ANAC46          <<<<<<<<<TBF1       <-----------GT1    <-----------   aagcagcagtcaaagaaatcgacttggcttgtcttaaaaccacaaacgcttcttcttcttcgtcatcccatttcactcctttggctaatccaccaattac  13090200                 ------->PIF5                 <-------PIF5                 --------->TOE1(2)  <-----------ARR10  <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)  <---------ARR14(2) <---------CCA1(2) xxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3) -------------------WRI1 -----ANAC55(2)  --------->TOE2(2)                                                                  < ------ID1      --------->At4g35610                                                                 - ----At5g28300  --------->ZAT2                                        <---------LBD16              -- ----LBD16      <---------ZAT2                                     ---------->DOF2                 <- --->RAP2.6(3)  <---------At4g35610                           ------>MYB46(1)                      <- ---->AGL15     ----------->RAV1(2)                      <---------ARR14(2)                       --- -----AGL15    ------>NtERF2                             --------->ARR14(2)                       --- ----->AGL2--------->ANAC58                --------->AHL20(2) ------>MYB83     --------->YAB1     <-- ------AGL1--------->ANAC58   <-----------ARR10      --------->At4g35610--------->LBD16          ---- ------AG  --------->ANAC46   --------->GLK1(2)<-------TEIL <---------MYB59  --------->GLK1(2)-------   ggcaaatctcactaagccacctgcgaagagacaatctactctcgataaattcatcggcagaaccgaacataaaccggagaatcatcaagttgtttccgag  13090300            <---------DOF5.7(2)          --------->DOF5.7(2)         --------->TOE2(3)         --------->TOE1(3)       <---------TOE1(3)       <---------TOE2(3)      <---------DOF5.7(2)    --------->DOF5.7(2)  <---------ANAC46  <---------ZAT6           <---------MYB52(1)      <---------At4g35610 ---------ANAC46          =======================HOX2a_HOX2a ---------->GT1           ------>ZmHOX2a(1)        --------->At4g35610 ------->ALFIN1   --------->YAB1                   <---------ZAT2 ----------------------TaNAC69(2)           ------>ZmHOX2a(1) --------AtMYB61 <---------YAB1           ------>ZmHOX2a(2)                      <---------TOE2(3) ------>ZAT18  --------->TOE2(3)        --------->ARR11(3)                   <-------GAMYB ------>ZAT14  --------->YAB1        <---------WOX13(1)                     --------->MYB52(2)   ---- -------ZAT14 ----------->GT1--------->MYB52(2)    <------NtERF2            <---------MYB46(3)  <---- ----->ALFIN1<---------TOE2(3)       <---------KAN4(2)                 --------->LBD16      <-------- -->LBD16--------->YAB1   <----------DOF2 ----------->RAV1(2)      <-----------GT1          <--------   tgtggtgttaacgataacgataatagtcctttagttgggattgatcctgaggcagctaaaacttggatttatccaggtttgttgagattgttaactttat  13090400                           <-----------RAV1(1)                          <---------TOE2(3)                     <----------DOF2     <----------DOF2     --------->YAB1                        --------------->AGL15 ----->YAB1         <---------ANAC46                      <---------HSFB2a(1)        <----------DOF2 -----YAB1       ----------->HVH21                        --------->HSFB2a(1)   <---------MYB52(1) --DOF2          ----------->TGA1       <---------ANAC46  --------->ALFIN1  <---------YAB1 -DAG2        --------->ALFIN1     <---------ANAC46       <---------ZAT6<---------GLK1(2)           <   gataaaacttttgtaagtggtgacgaataatgttgttttgtggtgttttagtgaatgggagtgttcctttaagagattatcagtttgctataacgaagac  13090500  Previous    Next  AGI:  At1g35530.1    Description:  DEAD/DEAH box helicase, putative. similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G36020.1); similar to Similar to probable ATP-dependent RNA helicase - fission yeast (Schizosaccharomyces pombe) [Oryza sativa (japonica cultivar-group)] (GB:AAX96303.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO15456.1); similar to hypothetical protein OsI_034134 [Oryza sativa (indica cultivar-group)] (GB:EAY80175.1); contains InterPro domain Restriction endonuclease, type I, R subunit/Type III, Res subunit; (InterPro:IPR006935); contains InterPro domain Helicase, superfamily 1 and 2, ATP-binding (InterPro:IPR014021); contains Inter Range:  from: 13089972    to: 13097056    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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