Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                              <-----------GT1                                                                       <---------ANAC46                                                                       <---------ANAC58                                                             <------ZmHOX2a(2)                                          <---------------------WRI1   <---------ANAC58               --------->TOE1(3)     --------->ANAC58       --------->ARR11(3)               --------->TOE2(3)     --------->ANAC58       <---------ARR11(3)          --------->CCA1(2)          --------->ANAC46     xxxxxxxxxxxxxxxx>smallRNA(i)          xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)        <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(s2)          <         <---------ARR11(3)        --------->ZAT6  <xxxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)    <xxxxxxx         --------->ARR11(3)xxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)       <---------MYB46(3)     <xxxxxxx   aacacaatagagatataccttaagatgaattgcaataacacgacattgaagcttagaaggaagatcacaaattggttgtaactcattcaactcttctctt  13085400                        <xxxxxxxxxxxxxxxxsmallRNA(i)                       <------NtERF2                      <---------RAP2.6(3)                      <-----------HVH21                     ----------->GT1                     --------->RAP2.6(2)                  <xxxxxxxxxxxxxxxxsmallRNA(i)                 --------->DAG2                ---------->DOF2           --------->TOE1(3)           --------->TOE2(3)--------->DAG2          ----------->RAV1(2) ---------At4g35610<xxxxxxxxxxxxxxxxsmallRNA(i) xxxxxxxxxxxxxxxxsmallRNA(se3)                                                        ---------->DOF2 xxxxxxxxxxxxxxxxsmallRNA(i2)----------->GT1                              ---------->DOF2   gtagatgcctcaacctgaaaaagccgtcaaaaggtttcatagacgagagagagagagagaagagagagagagagaagaaagggagagagaaagaagagag  13085500                                                                                  --------->ANAC58                                                                         <---------ANAC58                                                                         <---------ANAC58                                                                       xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)                                                                      xxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)                                                                   xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(l2)                                                                xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)                                                               xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(i2)                                                               xxxxxxxxxxxxxxxxxxxxxx>smallRNA(i2)                                                               xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(l2)                                                              <---------ARR11(3)  ----------->GT1                                                            <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)                                                            --------->ANAC58   <------ZmHOX2a(1)                                                            xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)                                                            --------->ANAC58 <---------TOE2(3)                                                            xxxxxxxxxxxxxxxxxxxx>smallRNA(si3)                                                         xxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)                                                xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)       <--------                                                xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(i2)     <-----------GT1                   <xxxxxxxxxxxxxxxxsmallRNA(i)<xxxxxxxxxxxxxxxxxxxxsmallRNA(si3) --------->ANAC58      ---------->DOF2            <------ZmHOX2a(1)  <xxxxxxxxxxxxxxxxsmallRNA(s)---------->DOF2   agaagagagaaagagaagagagggagagagagagaggagagagagagagagagagaactcacaagctctatattgccttgaggaaagtaataaacctttt  13085600                                 <xxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)                                 <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)                                <xxxxxxxxxxxxxxxxsmallRNA(s)                               <xxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)                               <xxxxxxxxxxxxxxxxsmallRNA(s)                               <xxxxxxxxxxxxxxxxsmallRNA(i)                               <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)                              xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)                              <---------ALFIN1                             --------->LBD16                            --------->ANAC58                            --------->ANAC58                           <---------LBD16                          <xxxxxxxxxxxxxxxxsmallRNA(i)                         <xxxxxxxxxxxxxxxxsmallRNA(i)                         <xxxxxxxxxxxxxxxxsmallRNA(s)                         --------->PCF2     --------->ARR14(2)                        <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)                        <-----------HVH21   --------->MYB52(1)                     xxxxxxxxxxxxxxxx>smallRNA(i)                    <xxxxxxxxxxxxxxxxsmallRNA(s)                    ---------->DOF2      --------->HSFB2a(2)                  <xxxxxxxxxxxxxxxxsmallRNA(s)                                 ------->GAMYB                 <xxxxxxxxxxxxxxxxsmallRNA(i)                                 --------->MYB46(3)                 <xxxxxxxxxxxxxxxxsmallRNA(s)                                <---------At4g35610                xxxxxxxxxxxxxxxx>smallRNA(s)<---------ARR14(2)               --------->At4g35610            <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)                        xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)            <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)                       --------->WOX13(1)           ---------->TaMYB80<xxxxxxxxxxxxxxxxsmallRNA(i)              ------>ZmHOX2a(2)           xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)                     <---------AGP1                 <           xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)                    <---------CCA1(2)              -- <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)   <---------HSFB2a(2)  --------->ARR11(3)             -------- -DAG2     <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)           ---------->DOF2XXXXXXXXXXXXXXXXXXXX>MIR780.1   ctccaagttttggaatatcacacaaaggtcccgcacagagtttccataactgctcgtacatatagctcttggatctatcaactgccgaacaaaaaccaaa  13085700                                                                                       xxxxxxxxxxxxxx                                                                               <---------ZAT18                                                                           xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)                                                                           --------->ALFIN1                                                                        <---------TOE2(3)                                        ----------->GT1                 <---------TOE1(3)                                       --------->DAG2                  <-----------RAV1(2)                                      ---------->DOF2             <---------YAB1    --------->YAB1                                  --------->AHL20(2)              xxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)    <-----------GT1          --------->AHL20(2)               xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(l2) ---------YAB1            ----------->GT1          <---------ANAC58xxxxxxxxxxxxxxxx>smallRNA(s)  <xxx ------->TOE2(3)         <---------TOE2(3)    xxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3) xxxxxxxxxxxxxxxxxx ->AtMYB61      <---------ZAT6   --------->AHL20(2)<---------ANAC58xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)   acattataaccaaaacaagtgttcaataagataaaataaaaaaagtcaaaatttcttacttatgcctgataattcaggttgtgcattcacaacgttgcca  13085800                                                           ------------>CBF                                                     <---------ICU4                                                     --------->ATHB51                      <------ZmHOX2a(2)              <--------HAHB4                     <---------ARR14(2)              --------->YAB1                     --------->ARR14(2)              -------->ATHB1                 ---------->DOF2                    <---------YAB1           ------>ZmHOX2a(1)     --------->ARR14(2)                             --------->ICU4           <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(i2)     <---------ARR14(2) xxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)            <----------DOF2  <---------HSFB2a(2)<---------ARR11(3)             <---------ATHB51---------->ID1  --------->HSFB2a(2)<xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(i2) <-----------GT1   --------->TOE2(3) xxxxxxxx>smallRNA(si3)------>ZmHOX2a(2)        ------------>CBF   <-----------GT1 xxxxxxxxxxxxxxxxxxxxsmallRNA(se3)   --------->AHL20(1)<---------YAB1  <---------DAG2 xxxxx>smallRNA(se3) --------->ARR11(3)     --------->TOE2(3)    <-----------GT1            ------>NtERF2   gtttccataacctcttatccaaagatcggtataccaaaatatgttatctcaacaattattatacaattttctccctttcctcaacttctctcgcgaccat  13085900                                                                                --------->DAG2                                                                                <---------TOE2(3)                                                                                <---------TOE1(3)                                                                            <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(i2)                                                                           --------->AHL20(2)                                                                          --------->AHL20(1)                                                                      <---------AHL20(2)                                                          ----------->ARR10<---------AHL20(2)                <-----------TBP              <---------AHL20(2)       <---------AHL20(1)               --------------->AGL15         --------->AHL20(2)       --------->AHL20(2)            <         --------->RVE1(1)                --------->TOE2(3)          --------->AHL20(2)           ---  --------->ANAC58                      <-------TEIL    ------>ZmHOX2a(1) --------->AHL20(2)  <------  --------->ANAC58                --------->YAB1       --------->TOE2(3)  <---------AHL20(2)  -------   gagaacgcaaaatatcacatttataggtaagaagtatcaaaatacattaaaatacttccttagatttgatattaaatttaataaggttaccaaaaattta  13086000                               <-----------GT1                          --------->AHL20(1)                          <---------AHL20(1)                          --------->ATHB12                          <---------AHL20(2)            <-----------TBP                --------->YAB1                          --------->ARR11(3)          --------->AHL20(2)               <---------ICU4 ----------->GT1        <---------TOE2(3)            <---------AHL20(1)              <---------ARR11(3) ---------TOE2(3)      --------->YAB1                <---------AHL20(2)          <---------MYB59 ------->DOF2          --------->AHL20(2)       ------------>CBF <---------YAB1-------->P ---AHL20(2)         --------->ICU4   --------->ANAC46<---------AHL20(2)  <-----------GT1<---------YAB1 -->AHL20(2)         <---------YAB1<---------ZAT14   --------->AHL20(2) <---------WOX13(1)   taaaggtaatttagagaaatgtcattaatattttgactacacataagaaaatcaatttttttatatgtttattgattaacttaccaaaatcatcatatgc  13086100                                                        <---------ARR11(3)                       <---------YAB1 <---------ICU4    --------->ARR11(3)                      <---------AHL20(1)                --------->AHL20(1)                      <---------AHL20(2)                <---------AHL20(1)                         <-                      --------->AHL20(1)       --------->YAB1                              --------->TOE2(3)                      --------->AHL20(2)      ----------->GT1                         --------->AHL20(2)                ----------->GT1  --------->AHL20(2)  --------->AHL20(2)               <---------AHL20(2)   attattcatatataagttgagtaatataatacagttttaatacttacaatgaaaaaaaaatatttgaattttgtttatagatagccatataaatctaaat  13086200             <----------DOF2             <---------DAG2        <---------ANAC58        <---------ANAC58       <---------STY1(2)       --------->STY1(2)    <---------ANAC58    <---------ANAC58  <---------ARR11(3)  --------->ARR11(3)                                                  --------------->AtSPL8 --------->GLK1(1)                                            <------ZmHOX2a(1) <---------GLK1(1)                                          ----------->GT1                <---------AHL20(2) -----ZmHOX2a(1)   <----------DOF2                  ----------->GT1   <---------------AtSPL8   aggagttcttgctagctttttcttttcaacatatgcattattcatatataagttgagtaatataggaaaattttagtacttacaacaaaacatttttttc  13086300  Previous    Next  AGI:  At1g35520.1    Description:  ARF15 (AUXIN RESPONSE FACTOR 15); transcription factor. Identical to Putative auxin response factor 15 (ARF15) [Arabidopsis Thaliana] (GB:Q9LQE3); similar to ARF21 (AUXIN RESPONSE FACTOR 21), transcription factor [Arabidopsis thaliana] (TAIR:AT1G34410.1); similar to ARF22 (AUXIN RESPONSE FACTOR 22), transcription factor [Arabidopsis thaliana] (TAIR:AT1G34390.1); similar to ARF12 (AUXIN RESPONSE FACTOR 12), transcription factor [Arabidopsis thaliana] (TAIR:AT1G34310.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO69513.1); contains InterPro domain Transcriptional factor B3; (InterPro:IPR003340); contains InterPro domain Aux/IAA- Range:  from: 13082797    to: 13085808    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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