Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                              <---------AHL20(2)                       --------->ARR11(3)                                             <---------YAB1                       <---------AHL20(1)                                             <---------AHL20(2)                -------->HAHB4                             --------->CCA1(2)          --------->AHL20(2)               <---------ATHB51                           <---------AHL20(1)    --------->AHL20(2)           --------->AHL20(1)                             <---------AHL20(2)    <---------AHL20(2)           --------->AHL20(2)                         <---------AHL20(2)     --------->AHL20(2)    ----------->GT1    --------->AHL20(1)        <---------AHL20(2)          <---------AHL20(1) ------->AHL20(2)      <---------ARR11(3)        <---------AHL20(1)          --------->AHL20(1) --------AHL20(2) <---------WOX13(1)             --------->AHL20(2)   <---------YAB1 --------->YAB1 --------YAB1  <---------YAB1                <---------RVE1(1)        <---------AHL20(2) -------AHL20(1)--------->ATHB51            <---------ARR11(3)       --------->AHL20(2)           --- ------>AHL20(1)<--------ATHB1              --------->ARR11(3)       <---------AHL20(1)           <-- -------AHL20(2)<---------ICU4   --------->ARR11(3)  --------->AHL20(1)   --------->AHL20(2)  <------ ------>AHL20(2)--------->ATHB12 <---------AHL20(1)  <---------AHL20(2)   --------->YAB1      ------- ----AHL20(2)  --------->ICU4    --------->AHL20(1)  --------->AHL20(2)--------->YAB1--------->TOE2(3) --->YAB1 --------->YAB1<---------AHL20(2)<---------ZAT6  --------->AHL20(1) <---------AHL20(2)  ---- --->AHL20(2)--------->YAB1 --------->AHL20(2)  --------->AHL20(2)   --------->AHL20(1) --------->YAB1   tataatttgtaaaaataataattgatatatttaaaaatattgtagagatattaaatttaatatatgaaaaatataataatattttaatattaataagata  13076400                                                                                 <---------AHL20(2)                                                                              <---------AHL20(1)                                                                              --------->AHL20(1)                                                                              --------->AHL20(2)                                                                              <---------ARR11(3)                                                                              --------->ARR11(3)         xxxxxxxxxxxxxxxx>smallRNA(i)                                         <---------AHL20(2)        --------->GLK1(2)                                               --------->YAB1        <---------ARR14(2)                                            --------->AHL20(2)        --------->ARR14(2)                                            <---------YAB1        <---------ARR11(3)                                           --------->TOE2(3)        <-----------ARR10                                          <---------AHL20(1)        --------->ARR11(3)                                         --------->AHL20(1)  --------->YAB1                                                --------->AHL20(2) ------------>AGL15                                      <---------AHL20(2)--------->YAB1 -------------AGL15                                     --------->AHL20(2) <---------AHL20(2) ---ARR11(3)   xxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)     <---------AHL20(2) --------->AHL20(2)  <----- -->ARR11(3)  <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3) --------->AHL20(2)<---------AHL20(2)      <------ ------------->AGL1       <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3) <---------AHL20(2)    <---------TOE2(3)   cctataagagtatctcaccaatggaagcacaattttagtataagtttctctacttaaattaaatataaaaatattaataatatattatgaggtattgatg  13076500                                                                                     --------->ATHB12                                    ------>MYB83                                 --------->AHL20(1)                                    ------>MYB46(1)                              <---------ARR11(3)                                  <---------MYB111(1)                   <---------ANAC58                                  <---------MYB59                       <---------O2 --------->ATHB51                                 --------->ANAC58                       --------->ANAC55(2)                        <---------TOE1(2)                               <---------ANAC58                        <---------TOE2(3)                               <---------ANAC55(2)               <---------At4g35610<---------MYB46(2)                    --------->O2<---------YAB1               <---------GLK1(1) --------->ANAC58                       <---------TGA1a               xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)                    --------->TGA1a <-----------ARR10      <---------TOE2(2)                            <---------ARR14(2) ----REM1(1)  ----------->ARR10 ------->TEIL                      <---------ANAC46  <---------AHL20(2) ---TOE2(3)--------->ALFIN1 <-------TEIL                 ------>ZmHOX2a(2)       --------->AHL20(2)   tagtatctcaccagtggagatgctcttaggttcgcacctaattttagagtttattctgatctcaaggggcgcatacgtggccatatattattggctctgt  13076600                                                                                                    <                                                                                                   --                                                                                                   <-                                                                                                 ----                                                                                                 ----                        <---------DAG2                                                           <---                        <----------DOF2                  <---------AHL20(2)                     -----                    ---------->ID1                      --------->AHL20(2)                     <-----                 <-----------GT1                    <---------YAB1                            <------             <---------AHL20(2)                   <-----------GT1                             -------            <---------AHL20(1)             <-----------GT1      <----------DOF2         --------->SPL7            --------->AHL20(2)           <---------AHL20(2)  <-----------GT1          --------->LBD16            <---------AHL20(2)       <---------AHL20(2) <---------AHL20(2)          <---------LBD16<-   gtttgacaaaacaattttttttctcgcttttggccttgtttattttttcatttcacgattaattttctttctcttctcttgtaaactccggaggccgatc  13076700          <---------YAB1          --------->ICU4     <------MYB83     ----------->GT1     <------MYB46(1)    <---------MYB46(3) --------->ATHB12         <------NtERF2 ---------YAB1        --------->ANAC46 ------->SPL7         --------->ANAC55(2) --------TOE2(2)      <---------ANAC55(2) ----->TOE2(2)        --------->ANAC58 ----->TOE1(2)        --------->ANAC58 ------SPL7--------->YAB1<-----------HVH21 ->ZmHOX2a(2)    --------->YAB1 -ZmHOX2a(2)     <---------ICU4          --------->ARR11(3) ---ARR14(2)  --------->YAB1           <---------YAB1                                       <-------- -->ARR14(2) <---------YAB1  <---------CCA1(2)      <------------CBF  --------->TOE2(3)     <-------- --------TOE1(2)<---------YAB1         <---------TOE2(3)           <---------GLK1(2)        <--------   gtacgattggtgattatcatcatcacgcgtcgtctcttaataagatagtttagagattgtgttcgtatcgattcttaaaacagttttataagtttcgttt  13076800                                     --------->ANAC58                                     --------->ANAC46                                   <---------ANAC46                       <---------TOE2(3)        =================================HOX2a_HOX2a               <-------PIF5        <---------ANAC58               ------->PIF5        <---------ANAC58              <---------ANAC46 <---------ANAC58 <------ZmHOX2a(1)                <---------ANAC46        <---------LBD16*TSS    <---------ANAC58----------->GT1                   <---------AtLEC2  <---------TOE2(3)    --------->MYB59      --------->At4g35610                  <---------ANAC58 -ANAC58<---------ANAC58     <---------YAB1------->GAMYB         <---------DDF1 --------->ATHB12 -ANAC46<---------ANAC58<------MYB83 --------->ANAC58  <-----------GT1    ------>ZmHOX2a(2) -ANAC58<---------ANAC46<------MYB46(1)  ---------->DOF2       --------->DEAR3(2)<---------ANAC58   aactgatgtttcgggctcgtggaattaggttgtgcttgctcgtaacagcaggataatttactgataccgacattgatcccattgcttggctagcacagtt  13076900                      --------->AHL20(2)                           <---------GLK1(1)                     <---------AHL20(2)                           --------->ARR11(3)                     <---------YAB1                               <---------ARR11(3)                  <---------ARR11(3)     <---------TOE2(3)       <<<<<<<<<RAP2.2                ----------->GT1  <---------AHL20(2)  <---------ATHB12         <---------ANAC46     ----------->GT1   >>>>>>>>>>>>>>>>>LFY  --------->ZAT6              ---   ataggtgtgttttgtgtctggatattatttagtagttaatttttagattaaaccaatgtttcaatttagatatcactaaatttttgtgtgataacaagtg  13077000                                                                                              -------                                                                                       <------MYB83                                                                                       --------->ANAC55(2)                 ------->TEIL                                                          <---------ANAC58          --------->CCA1(2)                                                            <---------ANAC55(2)         <---------ARR11(3)                                                            <---------ANAC58         --------->ARR11(1)            <---------ICU4                                  <---------ANAC55(1)         --------->ARR11(3)            <---------AHL20(2)                ---------->DOF2      <------     ---------->DOF2    <---------MYB52(1)  <---------YAB1         <---------DAG2      <------MYB46(1) <---------YAB1<---------ZAT18        --------->AHL20(2)           <----------DOF2    --------->MYB59 ------>ICU4   --------->ZAT18        <---------ATHB12   ----------->RAV1(2)          --------->MYB111(1)   atgttgataaagatatgtgcaccttcgttttttgtttctaataaatatgtttgcaaacagcctgagagactttttcaaaggaatcgattaggtgtctgta  13077100                                         <---------ANAC46                                         <---------ANAC58                                         <---------ANAC58                                         ----------->GT1                               <----------DOF2                                             ----------                             --------->At4g35610                                       <---------ANAC58    <----------DOF2       <---------At4g35610              <---------ANAC58            <---------ANAC58 -->ZAT14              ----------->ARR10--------->ALFIN1   <---------ANAC58          <-----------GT1 ---ZAT14  <------NtERF2  --------->At4g35610 --------->CCA1(2)        -------->P <---------ICU4  <--   gtgaagctttggctgcaactaggcctagagctgcttcaaggggtcgtgatatggagatagagcgtgacttactaaccaggtcaatttttacttgaaagtg  13077200        --------->AHL20(2)           --------->ARR14(2)        --------->YAB1--------->ATHB12--------->GLK1(1)                       --------->ZAT14       <---------ATHB51            --------->LBD16                       <---------MYB52(1) >DOF2 <---------YAB1<---------AHL20(2)                                 <-----------HVH21 --------DOF2 --------->GLK1(2)    ------>ZmHOX2a(1)             <-----------RAV1(1)   ctttgaacaattatagaatccatttcattgaaatttcctgatatgcatactgatgtgatttgctaaactgttgcagtcagttctctattgtacgagagaa  13077300  Previous    Next  AGI:  At1g35513.1    Description:  pseudogene of isochorismate synthase-related / isochorismate mutase-related Range:  from: 13076823    to: 13077467    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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