Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                                           <-----------                                                                                        --------->TOE2(3)                 --------->ANAC58                                                     <---------ARR11(3)                 --------->ANAC46                                        --------->GLK1(2)                 --------->ANAC58                            ------>ZmHOX2a(1)        --------->ARR11(3)       <---------TOE2(2)           ------>ZmHOX2a(1)         <----------DOF2<----------DOF2       <---------TOE1(2)          --------->TOE2(3)       ---------->ID1 <---------ARR11(3)---------- >DOF2<-----------RAV1(2)     <----------DOF2    --------->YAB1         <---------GLK1(2)------------   aacaatacccaggttgtctacgcattttgaagctttccttagtaaaaccaatagcaatttgtcctttaataccagaatctttaacaaaaatctcaaagta  13054600                                                                                      ---------->DOF2                                                                                   --------->ANAC58                                                                                   --------->ANAC55(1)                                                                           <---------ZAT18                                                                           <---------ZAT14                                                                        <---------ANAC46                                                                        <---------ANAC58                                                                        <---------ANAC58                                                                     <---------ARR14(2)                                                                     --------->ARR14(2)                      ----------->GT1         ------>MYB46(1)  --------->ARR14(2)  --------->ANAC46                    <-----------RAV1(2)       ------>MYB83     <---------ARR14(2)  --------->ANAC58         <---------ANAC55(2)                 ----------->RAV1(1) <-------TEIL------->TEIL      <----- ----AGL15         <---------ZAT2           --------->AtMYB61  --------->ARR11(1) <---------LBD16 <-- >DOF2   --------->ANAC55(2)    <---------ANAC58               <---------GLK1(2) --------->MYB52(1) --->AGL15     ------>ZmHOX2a(2)<---------ANAC58             ----------->ARR10  <---------ZAT14<-----   gtaagtaagacacttgatcggagcaggtttattagcttgaacaacaccaacatcgtgaccatgtagattcgtattcgtgtacttcacggaaagcttatca  13054700                       ------>NtERF2                     --------->ATERF1(1)                     <------NtERF2                     --------->RAP2.3(1)                    ------>NtERF2                    <---------ATERF1(1)                    <---------ERF1                    <---------RAP2.3(1)                    --------->LBD16                    <---------ORA47(2)                    <---------DEAR4(2)                   <---------RAP2.3(2)                   --------->RAP2.3(2)                   <---------ATERF1(2)                   <---------RAP2.3(3)                   --------->ATERF1(2)                   <---------DEAR3(1)                   --------->DEAR3(1)                  --------->ATERF1(1)                  --------->RAP2.3(1)                  <---------LBD16                  --------->ERF1                  --------->ORA47(2)                 --------->LBD16                                                                   <-                 ------>NtERF2                                                                     <-             <---------ARR14(2)                                                                    --             --------->ARR14(2)                                                                    --            <---------GLK1(1)                        --------->ICU4                                --         --------->ANAC46                        <---------MYB52(1)                                <-         --------->ANAC58                       <---------DEAR3(2)                            -------         --------->ANAC58                     <---------MYB52(1)                        <---------ANAC46 ----LBD16  --------->GLK1(1)   =====================================HOX2a_HOX2a       <---------At4g35610 ----ZmHOX2a(1)  <---------ATERF1(1)         <-----------HVH21------>ZmHOX2a(1)        <---------LBD16 ------RAV1(2)  --------->ANAC46------>ZmHOX2a(2)--------->At5g28300                   --------->At4g35610   ggagaaaccacaagaaatccgccggcgctattgatcgtattcaactccgtcggtaattcttctccttcgtcttccttcgcatctcgtttagcggagagac  13054800                                                                               <---------AtMYB61                                                                               <---------DEAR3(1)                                                  <---------ANAC58          <---------DEAR3(1)                              <---------WRKY18(1) <-------GAMYB       <---------ARR14(2)                           ------>ZmHOX2a(2)      <---------ANAC46    <---------GLK1(1)                          <------ZmHOX2a(2)       <---------ANAC58    --------->ARR14(2)                         <---------ARR11(3)      <------MYB46(1)  <---------ANAC46 <---------MYB46(3)                         --------->ARR14(3)      <------MYB83    <------NtERF2<---------MYB52(1)                         <-----------ARR10       --------->MYB55(2)   --------->GLK1(1)       -------                         --------->ARR14(2)      <---------MYB46(3) <------NtERF2 <---------ANAC46 ----------ARR10         <---------ARR14(3)      --------->MYB52(2)--------->LBD16<---------AtMYB61 --------ARR11(1)        --------->ARR11(3)     <---------AtMYB61<---------LBD16--------->MYB55(2) ------->GLK1(2)         --------->AGP1       --------------------->WRI1    <---------ATERF1(2) ------->ARR14(2)        <---------AGP1--------->ANAC46        <---------DEAR3(1) --------->ALFIN1 ----->TEIL              <---------ARR14(2)  <---------MYB46(3)--------->WRKY12--------->ALFIN1 --------ARR14(2)       <---------CCA1(2)   <---------MYB52(1)<---------MYB52(1)<---------MYB46(3) -->CCA1(2)            ----------->ARR10   <-------GAMYB     <-------GAMYB <---------LBD16   <-------TEIL   gaatcttgtctaagaagtttaagttcagatcttgaccgttctcgccgttgttggttgtatcgccgttggcggaattcgccggtggtggtgaagagttcat  13054900         <---------------AGL15         --------------->AGL15         <---------YAB1                                                        <---------ZAT14        ----------------->AGL1                                                 --------->ZAT14        ----------------->AGL3                                             >>>>>>>>>TBF1      ------- -->ATHB12                          <---------TOE2(3)                --------->YAB1         *TSS   tggttttggttccgattagagaaaaccctagaaattttgagattaggctcttcagaggtttttggagtctataagaagaagaacactgaattagagaatt  13055000                                      <---------MYB52(1)  <---------MYB52(1)                            <---------AHL20(2)          --------->ANAC58          <<<<<<<<<TBF1 <---------AHL20(2)              --------->ANAC46          <------------------------ANAC81               --------->ANAC58                          <--     <---------GLK1(1) --------->AHL20(2)          ----------->HVH21                             <---     --------->GLK1(1) <---------AHL20(2)    <---------YAB1                                      ----  <---------TOE2(3)   <---------WOX13(1)   <---------AHL20(2)                                   <---- -->GLK1(2)      <----------DOF2   ------>ZmHOX2a(2) --------->PCF2<---------MYB52(1)<---------AHL20(2)   tgttgagatttcttcttctctttgatttattttttgatccgttgtttatttttgtgacccgctagtttcggtatttgttagacttatttttttcttatat  13055100                           <---------ICU4                          --------->ICU4          <---------AHL20(2)   ----------->GT1          --------->AHL20(2)  <---------AHL20(2) -------AHL20(2)        --------->AHL20(2)                                                  --------- ------AHL20(1)         --------->YAB1                                                  --------->AHL20(2) ----->AHL20(1)        <---------AHL20(2) --------->WOX13(1)   --------->YAB1   <---------DAG2      < -----AHL20(2)       --------->YAB1   <-----------GT1<---------MYB46(3)         <----------DOF2    --   atatttctctatataaatttcataaataatatttagttatataccaattagttggctgtttcaattcataaaaaaacacaaacttttttataaaatgtaa  13055200                                   <----------DOF2                     --------->AHL20(2)                     <---------AHL20(2)                                           ---------->DOF2                    <---------AHL20(2)                                            <---------ICU4    - -->GT1             --------->AHL20(2)                                         --------->YAB1      -- ---------AHL20(2)  <---------AHL20(1)     ----------->GT1                    <-------TEIL--------->AHL20(2) ------->AHL20(2)   --------->AHL20(1) <---------AHL20(2)                 <---------YAB1<----------DOF2   aattaatccatgttttatcaaatttaattcatacacacttttaaaatgtaaaatcaaatccatgtttttatcaaatgtgattcataaagacttttaatat  13055300                                      <---------ARR11(3)                                         ----                                      --------->AHL20(1)                                       <-----                                      --------->ARR11(3)                        <---------ALFIN1<----                                      <---------AHL20(1)          ---------->DOF2              ------            <-----------GT1      --------->AHL20(2)             <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)    ----------->GT1             --------->AHL20(2)      <----------ID1         <---------ZAT18 ------ -------->DAG2              --------->AHL20(2)          ----------->GT1  <---------AtLEC2  <--------- -------->DOF2           --------->TOE2(3)          ---------->DOF2     <-------TEIL      <----------   caaaagtggttttattaccaaaacaaaacttaaaataaaaaatatttcaaaaacaaaagagaaaaaacaaaagtttcatggcacacttgatttttccgat  13055400                                                                            <---------MYB59                                                                            --------->TOE1(2)   <----                                                                            <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)                                                                           <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)                                                                           <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(l2)                                                                           <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(i2)                                                                           <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(s2)                                                                         <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)                                                                        <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)                                                                      xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)                                        <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3) ------>MYB83      -----   --------->HSFC1(2)                 <---------ARR14(2)       xxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)   --------->HSFB2a(1)                --------->ARR11(3)      --------->ARR14(2)               <-----   <---------HSFC1(2)                 <-----------ARR10       <---------ARR11(3)               ------  ------->TEIL                        <---------ARR11(3)      <---------ARR14(2)               <----- -->ZmHOX2a(2)                        --------->ARR14(2)      --------->ARR11(3)    <-----------GT1 < ----ARR14(2)                  <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)<-----------RAV1(1)   --------->AHL20(2) --ZmHOX2a(2)                 xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(i2) xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3) --->ARR14(2)                 xxxxxxxxxxxxxxxx>smallRNA(i)    <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)  - --->ARR11(3)                 <----------DOF2 ----------->GT1<---------CCA1(2)------>MYB46(1)  ------ --GT1       --------->HSFB2a(2)     <---------CCA1(2) --------->ATHB12 <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3) -GT1        <---------HSFB2a(2) <---------ANAC46 xxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)    --------->YAB1   cttgaaccttctactctcgaactacttgtagtctttcgagtatctccatggttaaactcattggtatcttctgtggtacctacaatttacaatgaaattt  13055500  Previous    Next  AGI:  At1g35470.1    Description:  SPla/RYanodine receptor (SPRY) domain-containing protein. similar to SPla/RYanodine receptor (SPRY) domain-containing protein [Arabidopsis thaliana] (TAIR:AT4G09340.1); similar to ranBPM-like [Oryza sativa (japonica cultivar-group)] (GB:BAD15463.1); contains InterPro domain CT11-RanBPM (InterPro:IPR013144); contains InterPro domain B302, (SPRY)-like (InterPro:IPR001870); contains InterPro domain SPla/RYanodine receptor SPRY (InterPro:IPR003877); contains InterPro domain LisH dimerisation motif (InterPro:IPR006594); contains InterPro domain CTLH, C-terminal to LisH motif (InterPro:IPR006595) Range:  from: 13051436    to: 13054992    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At1g35480.1    Description:  transposable element gene. hAT-like transposase family (hobo/Ac/Tam3), has a 8.9e-45 P-value blast match to GB:AAD24567 transposase Tag2 (hAT-element) (Arabidopsis thaliana) Range:  from: 13055376    to: 13056342    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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