Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                    <---------RAP2.6(3)               <                                                <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)      <------ZmHOX2a(2)                                            --------->TOE2(3)    --------->RAP2.6(2)      <---------ARR11(3)         <---------GLK1(2)                  --------->TOE1(3) ------>MYB46(1)          --------->HSFB2a(2) ----->ANAC46 --------->At4g35610         -------->P          ------>MYB83   --------->RAP2.6(3)  --- ----->TGA1a  <---------At4g35610      <---------MYB52(2)     --------->MYB52(1)       ------>ZmHOX2a(1) --->ANAC46<-------TEIL              <-----------GT1     <-----------GT1    --------->MYB52(1) ------   catcagaaacagattcatcggaatttgggagaccgcttataactaaccttagaatggattaacctagccgaaatcagagaacggccttcctagatcacca  13008500             <------NtERF2             ------>NtERF2             --------->LBD16            --------->RRTF1(3)            --------->DEAR3(1)            ----------->RAV1(1)            --------->RRTF1(2)            --------->RAP2.3(3)            --------->RAP2.3(2)           <------NtERF2           --------->RAP2.3(1)           --------->RRTF1(1)          <---------ATERF1(1)          --------->LBD16          ------>NtERF2         --------->ANAC58         --------->DEAR3(1)         --------->ANAC46         --------->ANAC58        --------->MYB46(3)      --------->PCF2    --------->WRKY12    --------->WRKY38(1)    ----------->HVH21   <-----------HVH21  --------->LBD16  <---------At4g35610  --------->At4g35610              <---------At4g35610  <---------ATERF1(1)       xxxxxxxxxxxxxxxx>smallRNA(i)  <---------DEAR3(2)     <---------MYB52(1)                                         --------->CCA1(2) <---------DEAR3(1)     --------->At5g28300             <---------ARR14(2)         --------->ARR11(3) ---------LBD16     --------->AtMYB61                   --------->ARR14(2)         <---------ARR11(3) ------>DEAR3(1)   --------->MYB46(3)               --------->YAB1   --------->AHL20(2) --->AtMYB61--------->RAP2.6(2)    --------->At4g35610  --------->GLK1(2)  --------->CCA1(2)   tcgccggtgacccgccgcaaaaccaccgttactcttcggcagactattcgaaaatgagaatttggggttcttaaaatatacaagagatattagagagaaa  13008600                                                           <---------AHL20(2)                                                           <---------AHL20(1)                                                           --------->AHL20(2)                                                           --------->AHL20(1)                                 <---------AHL20(2)       <---------AHL20(2)                       <-----------GT1   <----------DOF2  --------->AHL20(2)                   <----------DOF2   <-----------GT1  <---------YAB1           <---------DAG2    <---------DAG2      --------->YAB1                                 -----           <----------DOF2   <----------DOF2    <---------YAB1      <---------MYB52(1)--------->GLK1(1)   cttgtagtagacgcttttcttctttaaacggcttttttatttcctttgctataattctaattttatttctgttatatagaaatttcagaattcaaaatga  13008700                                                                         --------->ABI4(1)                                                                         ------>NtERF2                                                                        <---------ALFIN1                                                                        ------->GAMYB                                                                        --------->DEAR3(1)                                                                       --------->ORA47(2)                                                                       --------->MYB46(3)                                                                      <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)                                                                     <---------ALFIN1                                                                ------>MYB46(1)                                                                ------>MYB83                                                              --------->DEAR4(1)                                                           <---------ALFIN1                         <                                               <---------ZAT14--------->DREB2C(2)                   <          --------->LBD16                      --------->ZAT14--------->DEAR3(1)                   --        <---------LBD16             <---------HSFB2a(2)   --------->MYB46(3)                   <-----        --------->At4g35610         --------->HSFB2a(2)  ------>ZmHOX2a(1)                  ------>ZmHOX2a(2)        <---------At4g35610       ----------->RAV1(2)  ------>ZmHOX2a(2)--------->DREB2C(2) =========        --------->LBD16         xxxxxxxxxxxxxxxx>smallRNA(s)  ------->GAMYB               --------->ARR11(3) ---------->DOF2      <-----------GT1      --------->GLK1(2) --------->DEAR3(2)           <---------ARR11(3) ----->DOF2      <---------DAG2xxxxxxxxxxxxxxxxxxxxxx>smallRNA(i2)   <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)   aagaaaagaccgcggaaaaccttttctctctcttccttctgggcgattctacagtgatcctccaccgacttccaccgcctcaattttctggtgatctctt  13008800                                             <---------ANAC58                                           <---------MYB52(1)                                         <---------ANAC58                                         <---------DEAR3(2)                                      <-----------HVH21                                      --------->ARR14(2)             --------->ARR14(2)       <---------ARR14(2)         <---------ZAT18             <---------DEAR3(2)         <---------LBD16            <---------ATERF1(2)     ------>ZmHOX2a(1)    <---------MYB52(1) <---------ANAC58     <---------MYB46(3) ---------ANAC58         --------->LBD16 <---------ANAC58       <-------GAMYB ---------ANAC58 <-----------GT1    --------->ATERF1(2)        <-----------RAV1(1) -------->ID1<-----------ARR10<xxxxxxxxxxxxxxxxsmallRNA(s) --------->WRKY38(1)                    <-- -----DOF2   <---------ARR14(2)   ------>NtERF2            --------->WRKY12                ---------- ===========HOX2a_HOX2a<---------LBD16<---------MYB52(1) <----------DOF2                 *TSS    ----   tgtcgtcctagtgcggattttactctccggtgtctctgccggtccgttcgtgttgttctctttgactgttgttgtcttctctgaatccatggataaagaa  13008900                                       <---------GLK1(1)                               ------>ZmHOX2a(2)                               ====================HOX2a_HOX2a                              <------ZmHOX2a(2)                              --------->At4g35610                              =====================HOX2a_HOX2a                             <---------ARR14(2)                             <---------AGP1                             --------->ARR14(2)          --------->ZAT2                             <---------ARR11(3)          --------->At4g35610                             --------->ARR11(3)          <---------ZAT2                             --------->GLK1(2)           ----------->RAV1(2)                            <------ZmHOX2a(1)          <-----------RAV1(2)                         <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)                        ------>ZmHOX2a(2)            <-----------HVH21     --------->ANAC55(2)                        ===========================HOX2a_HOX2a             <---------ANAC55(2)                       --------->CCA1(2)           <---------ARR11(3)      <---------ANAC58                       <------ZmHOX2a(2)           --------->ARR11(3)      <---------ANAC46     --------->ANAC58  ============================HOX2a_HOX2a             <---------ANAC58     --------->ANAC58 <---------ARR11(3)    ------>ZmHOX2a(1)          --------->ATERF1(1) -------ICU4          --------->ARR11(3)    --------->At4g35610   <---------DEAR3(1) >DOF2                <---------AGP1   --------->GLK1(1) <---------At4g35610                       <- ----->ICU4           --------->AGP1   <---------At4g35610 ----------->HVH21   xxxxxxxxxxxxxxxxxxxxxx   ttatggcaagcgcttcaaaatttagatctaggatctgagagagctcctctgaagatgtcagctgaagcgaggcgctcgcgtgatatagataatcgtctca  13009000                                                       <----------DOF2            <---------ARR11(3)                        <---------ANAC58            --------->ARR11(3)                 ---------->DOF2        ---------->DOF2                   <------ZmHOX2a(1)     <-----------HVH21                --------->ZAT2  <---------ANAC58                              < --------MYB59                        <---------ZAT2 <-------TEILxxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3) x>smallRNA(le3)     --------->ANAC46 --------->At4g35610     ---------->DOF2        ----------->GT1-   gcctaattgtcaaaggtctaaaccctcaacatcagaaaccagcaggacttaaaggtgctttgcctaaagcttggagattggatggaagggttacaagtag  13009100                                                                                                    <                                                                                                    <               <---------ZAT6                                                                  <-----         --------------->AtSPL3                                                              <-------      ----------->TGA1                                                                       <------MYB83    <---------ICU4                                                                      <---------HSFB2a(2)    -------->HAHB4                                                                      --------->HSFB2a(2)    --------->YAB1                                         <---------HSFB2a(2)         <---------LBD16   --------->ICU4                                          <---------HSFC1(1)     <---------ICU4 <---   <---------ATHB12               --------->At4g35610      --------->HSFB2a(2)    --------->ATHB51 <-  <---------TOE2(3)               <---------At4g35610      --------->HSFC1(1) <------NtERF2  <------MYB46(1) ---------AHL20(2)             ---------->DOF2             ------>ZmHOX2a(1) ----------->RAV1(1)<---- -------->AHL20(2)          <----------DOF2--------->AtMYB61                 ------>NtERF2  <--------   aattaatgatgacggtactgttcaattcttctttaaagctgaacaccatctcatgtctgtcctagaaaatggcccttggcaccataatttctggatggtg  13009200                       <---------ANAC58      ------>ZmHOX2a(2)<---------ANAC58 -------GAMYB        ------->TEIL ---------At4g35610  --------->SPL7 ----RAP2.6(2)    <xxxxxxxxxxxxxxxxsmallRNA(s)          ----------->GT1           <---------ARR11(3) --MYB46(3)       --------->YAB1             <---------ARR14(2)              --------->LBD16 ---NtERF2       --------------->AtSPL3      <-----------ARR10               ------>ZmHOX2a(1) --------MYB46(3)<---------ATHB12            --------->ARR14(2)         --------->KAN4(2) -----MYB46(3)  ------>MYB83                <---------CCA1(2)   --------->GLK1(2) --------->ARR11(3) -AtMYB61       ------>MYB46(1)   <-----------GT1  <----------DOF2     <----------TaMYB80<------ZmHOX2a(1)   gctgttgatcgatggaccaatcgtaccttgtcaaattttctctcccaaatctccttttgggttaaaattctgcatattcctgaagattttaggacagacc  13009300                        <---------HSFB2a(2)                        --------->HSFB2a(2)                        <-----------RAV1(1)                       xxxxxxxxxxxxxxxxxxxxxx>smallRNA(l2)          <---------At4g35610                     <---------ARR14(2)                             --------->At4g35610               <-----------RAV1(2)                                --------->ARR14(2)               =====================RAV                           <---------ARR14(2)              --------->ZAT2                                    --------->LBD16              <---------ZAT2                                   <---------ANAC46              <---------ZAT14                          --------->ANAC58              <---------At4g35610                      --------->ANAC58              --------->At4g35610                      --------->ANAC46           xxxxxxxxxxxxxxxx>smallRNA(s)            <---------HSFB2a(2)   <---------YAB1    --------->ARR14(2)         <---------YAB1<---------LBD16                       -   cagttattagagagacagcaggggttctggggcatattgatgaaaccaaaattatagaagccactgcggatgctgaaggtgaagtctgggctcatgttac  13009400  Previous    Next  AGI:  At1g35390.1    Description:  transposable element gene. non-LTR retrotransposon family (LINE), has a 2.6e-43 P-value blast match to GB:AAA67727 reverse transcriptase (LINE-element) (Mus musculus) Range:  from: 13008889    to: 13014585    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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