Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                   <---------YAB1                                                                <---------AHL20(2)                                                                --------->AHL20(1)                                                                <---------AHL20(1)                                                               --------->YAB1                                                               --------->AHL20(2)                                                              <---------YAB1                                                            --------->YAB1                                        <----------DOF2     -------->ATHB1                                  --------->ANAC58          <---------ICU4                                  --------->ANAC46         --------->AHL20(2)               ---------                            --------->GLK1(1)              --------->ICU4                  <---------KAN4(2)                            --------->CCA1(2)              --------->AHL20(1)       ---------->DOF2                           <---------ARR14(2)              <---------YAB1          <---------YAB1 -------DOF2               --------->ARR14(2)           <---------AHL20(2)       --------->YAB1 ------DAG2                <---------ARR11(3)           --------->AHL20(1)       --------->AHL20(2) -MYB59                    --------->ARR11(3)           --------->AHL20(2)   --------->AHL20(2) -DAG2            <---------ZAT6  --------->ANAC58     --------->AHL20(2)   --------->AHL20(2)   <--- >TOE2(3)   --------->ZAT6<------ZmHOX2a(1)--------->ZAT6  <---------AHL20(2)<---------AHL20(2) -----   ttttcttatataaaacactagtgtaagaggatatacaagaaactttcactagataaaaaaaattattatatttgttcataaaattataaaggcaatattc  12964600                        ---------->DOF2                       <---------AHL20(2)                    --------->YAB1        <---------ICU4                                --------->At4g35610                   <---------YAB1        <---------YAB1                             <-----------HVH21                 <---------ICU4          --------->ICU4          <----------DOF2   ------->GAMYB >KAN4(1)        --------->YAB1        --------->YAB1    <-----------GT1          --------->MYB46(3) ------YAB1     <---------YAB1    ------>ZmHOX2a(1)      <---------WRKY18(1)    <-----------GT1 ---->TOE2(3) --------->YAB1      <----------DOF2       ----------->HVH21  --------->AHL20(2)   ttagtgtgtttctgaataatcataataaaaggaatcctttttcattattttctcttgtttgacctctctttttcaacttaattaaccatcagacgactaa  12964700                              <---------MYB46(3)                            --------->At5g28300                            <---------MYB52(1)                          --------->ANAC58                          --------->ANAC46                          --------->ANAC58                        <---------ALFIN1                                ------>MYB83                       ------>MYB46(1)                                  --------->SPL7                       ------>MYB83                                     ------>MYB46(1)                     ------->GAMYB                       <---------------AtSPL8                     --------->AtMYB61                   --------------->AtSPL8                    --------->MYB46(3)                   <---------------AtSPL3    ---------->DOF2        <---------ZAT18-------->P               ---------->DOF2       --------->TOE2(2)  --------->YAB1  <-----------GT1         --------->ALFIN1            --------->TOE1(2)       <------   gaaataatagtccagttgtttaaccaacacggtagttcaagagggtgaggcaaagtgagtttgtacttaaaacctacgacctcttcaaagtcaaaacttt  12964800                         --------->ZAT6                        <---------TOE2(3)                   <---------ICU4                   <--------HAHB4                   --------->YAB1                                  <-----------GT1                   --------->ATHB12                               <---------YAB1                   -------->ATHB1                               <--------HAHB4                  <---------ATHB12                              -------->ATHB1                  --------->ICU4                                --------->ATHB51                 ------>MYB83                                   <---------ICU4          <-------MYC3                 ------>MYB46(1)                                --------->YAB1          ------->MYC3                --------->WOX13(1)                             <---------YAB1      --------->YAB1              ------------>CBF                         <---------YAB1             <---------ATHB12  <              --------->MYB46(3)              --------->YAB1   <---------ATHB51   <<<<<<<<<ARR2     -     ---------->DOF2  <---------ICU4         <-------TEIL      --------->ICU4 ------------>CBF------- ----DOF2 --------->RAP2.6(2)         --------->AHL20(2)   ------------>CBF<-----------HVH21  -------   agatgaacaaagccgaaccaatcattaagactaaacaaaatgaaatattcatacttgattatacaattattactccctgtcacaatcaaacgtgttaagc  12964900                        --------->YAB1                       <---------YAB1                     --------->YAB1              --------->AHL20(2)             --------->AHL20(2)                      --------->LBD16         --------->AHL20(2)                         <---------LBD16         <---------AHL20(2)                      ------>MYB46(1)                     --------->YAB1 ---------ZAT14  <---------AHL20(2)              ------>MYB83                        <---------ICU4 -------->ZAT14  --------->AHL20(2)              -------->P                     ------------>CBF -->ANAC58   <---------AHL20(2)                 <---------ALFIN1              ------>ZmHOX2a(2) -->ANAC58--------->AHL20(2)          ------->TEIL ----------->RAV1(2)  --------->CCA1(2)          --   acttcaccgaaataaataattttttataatatgaaacatggacttcttccctaccctggaacatggagttcaagagatgatccacaattataacatagcc  12965000                                          <------ZmHOX2a(2)                                          ==================================HOX2a_HOX2a                                  <---------HSFC1(2)                                                <                                  --------->HSFB2a(1)                                    <-----------HVH21                             <---------HSFB2a(2)  --------->REM1(1)                     --------->ANAC46                            <---------LBD16=================================HOX2a_HOX2a --------->ANAC58                          --------->GLK1(2)------>ZmHOX2a(2)                        <---------HSFB2a(2)                       ------------>CBF  --------->ARR11(3)                  <---------ANAC58      --                     <---------YAB1      --------->ARR14(2)                  <---------ANAC46      --                  --------->ICU4  --------->HSFC1(2)    <---------ICU4       <---------ANAC58<-------    ---------->DOF2<---------ICU4 <---------HSFB2a(1)--------->YAB1     <-----------RAV1(1)  -------- -------->DOF2  --------->ANAC55(2)      <---------ARR14(2)          ------>ZmHOX2a(1)  --------->ANAC58   aaaaagaaaagcttcttcacatgatgacaatcgggaagagtccgatcttgctacatcatcatgttatcttcctattgttgcttgttctccaagtcagtgg  12965100                                                                  --------->ATHB12                                                                  <---------ICU4                                                                  --------->YAB1                                                                  -------->ATHB1                                                                 --------->ICU4                                                         --------->ANAC46                                                        --------->MYB46(3)                             --------->ARR14(2)         <---------LBD16   --------->At4g35610       <---------ARR14(2) <---------ATHB12 <---------ATHB12 ------NtERF2      --------->ZAT14            ------>MYB46(1)  --------->YAB1         --------->ANAC46 ------->ANAC58    --------->At4g35610        ------>MYB83--------->LBD16   <---------ANAC58 ------->ANAC58<---------ALFIN1             <---------MYB59  <------------------ATHB9 --------->ANAC58 --At4g35610  --------->MYB46(3)      ---------->DOF2 --------->MYB52(1)    <---------ANAC58 ->At4g35610<<<<<<<ZML2<---------ALFIN1    ----------------->AGL1<---------YAB1       --------->ANAC58   ccagcatcagcctagaaccactgctccaccgtatattgcccaaagaccaaatcaagtacccgcagtaatcattgcgatgcttatgttcacgctcttattc  12965200                  <---------MYB46(3)              <---------YAB1                               ----------->HVH21               <---------ANAC46              <---------ANAC46                         --------->At4g35610            <---------REM1(1)       <---------ANAC58                                <---------ZAT2       <-----------HVH21       <---------ANAC58                                --------->ZAT2      <------MYB46(1) <---------ANAC58       <---------ANAC46<---------YAB1       ------>ZmHOX2a(1)              <------MYB83    <---------ANAC58   agcatgttggcttgttgtgtttgttataaatacacaaacacatctcctcatggaaccagctctgataccgaagagggaggtcatggagaagtagcgttta  12965300                                                                                              <------              <---------ZAT18                                                                 -------              --------->WRKY12                                                               <------NtERF2              --------->WRKY38(1)                                                       --------->DAG2            --------->LBD16                                                           ---------->DOF2           <---------ANAC58                                                        --------->ANAC58           <---------ANAC46           <-------TEIL                               --------->CCA1(2)           <---------ANAC58       --------->AHL20(2)                            <---------ARR14(2)        --------->ANAC58       ----------->GT1                                  --------->ARR14(2)        --------->ANAC58    ----------->GT1           <----------DOF2       ---------->DOF2<---------DEAR3(1)        --------->ANAC46  <------ZmHOX2a(1)       <----------DOF2   ---------->DOF2--------->ANAC58 <   caaggagaacaagccgtggacttggaaaggatgtgataaattcgtttccttcctttctttactcacaagttaaagggctaaagataggcaaaggcggtgt  12965400         ------>ZmHOX2a(2)         ==========================HOX2a_HOX2a         ================================HOX2a_HOX2a        ===========================HOX2a_HOX2a        =================================HOX2a_HOX2a        <------ZmHOX2a(2)                  <---------ANAC58        --------->At4g35610                <---------ANAC46        <---------At4g35610                <---------ANAC58       --------->ARR14(2)                 ------>NtERF2       <---------ARR14(2)          <---------ARR14(2)  --------->TOE1(2)                --------->ARR14(2) <---------HSFB2a(1)              <------ZmHOX2a(1)                        <---------YAB1 ---ANAC46                    <---------TOE2(1)                   --------->AtLEC2 -->ALFIN1                    <---------TOE1(1)            --------->REM1(2)   --------->MYB52(2) ---------KAN4(2)           <------ZmHOX2a(1)         ------>NtERF2  ------->TEIL   <---------AtLEC2   ggaatgtgcgatctgcctgaatgagtttgaggacgaggaaacgctgcgtttaatgcctccttgtagccatgcatttcatgctagttgcattgatgtctgg  12965500  Previous    Next  AGI:  At1g35330.1    Description:  zinc finger (C3HC4-type RING finger) family protein. Identical to Putative RING-H2 finger protein ATL1H precursor (ATL1H) [Arabidopsis Thaliana] (GB:Q9C7I1); similar to zinc finger (C3HC4-type RING finger) family protein [Arabidopsis thaliana] (TAIR:AT2G35000.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO61662.1); contains InterPro domain Zinc finger, RING/FYVE/PHD-type (InterPro:IPR013083); contains InterPro domain Zinc finger, RING-type; (InterPro:IPR001841) Range:  from: 12965024    to: 12966091    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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