Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                                                      <                                                                                                    -                                                                                                    <                                                                                                   --                                                                     <---------ARR14(2)       <------      --------->ANAC46                                               --------->ARR14(2)       <------  <----------DOF2                                                <------NtERF2               <-------  <---------DAG2                                            --------->MYB52(2)      --------->MYB46(3) --->ANAC46                                               <---------MYB52(1)      --------->MYB52(1)- ----GT1           --------->TOE2(3)     <----------DOF2 --------->TOE2(3)        <-----------GT1  --   acaactttacgacaatgtgaacattagtagtcaaatagtcgttcttttacgactaactacgttagtcggcaaatactcgtctattaacgactatttaacg  12950000    --------->ATHB12   <---------YAB1   <---------AHL20(2)                                                        <------NtERF2 ---------AHL20(2)                                                    <---------MYB52(1) -------->AHL20(1)                                                  --------->MYB111(1) ---------AHL20(1)                                                  <---------MYB46(3) ------->YAB1                                                       --------->MYB46(2) ---TOE2(3)                                                         --------->MYB52(2) ---TOE1(3)                 --------->MYB52(2)                    <---------MYB52(1)             ---- ----GT1                  <---------MYB52(1)                     --------->TOE2(3)               ---- -------->AHL20(2)     ---------->ID1                           xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3) ------->AHL20(2)  <---------MYB52(1)<------NtERF2         ------>NtERF2--------->MYB52(2)       ----   attatattattgaagggagacgtttgtcgttacttagtcgccaattgacgactaccatctccgactacgttagttagtcgccaaatcagcgactaatata  12950100                                                                                                 ----                                                                                               <-----                                                                                               <-----                                                                                              -------                                                                                              -------                                                                                            ---------                                                                                           <-------TEIL                                                                                          <xxxxxxxxxx                                                                                        <------MYB46(1)                                          <---------ZAT14                               <------MYB83                                  xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)                --------------                             <---------At4g35610                                       --------->MYB46(2)         <---------MYB52(1)  --------->At4g35610                                       <-------------    <----------DOF2          <---------ZAT2                                            --------->MYB111(1) ----->ANAC58            --------->ANAC46 --------->ZAT14--------->MYB111(1)          <--------P ---- ----->ANAC46 --------->YAB1 --------->ZAT2       <----------DOF2        ---------->ID1--------->MYB59 ----->ANAC58 ----------->GT1<xxxxxxxxxxxxxxxxsmallRNA(s)--------->MYB111(2)     ----------------->AGL1   cgacaactttcggtaattgtaaaatagtcgcaactgagtcgcagagtagtcgcattaagtagttggaaaacgtttttcgcattgccaagtaggtacacct  12950200       --------------->AtSPL8      <-------GAMYB     <---------MYB46(3)     --------->MYB52(2) -->MYB83 ----MYB59 ----MYB111(1)                                             <---------ALFIN1 -->ANAC46                                              --------->ANAC58                      ------- -->ANAC55(1)                                           --------->ANAC46                     <------ZmHOX2a(2) >REM1(1)                                               --------->ANAC58         <---------ATHB12 --- xxxxxxxxxxxxxsmallRNA(si3)                           <-----------GT1   --------->ANAC46   ------->GAMYB ->AtSPL8                         <-------TEIL  <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)     --------->MYB46(3) --AtSPL8                --------->YAB1    <---------AHL20(2)         --------->ZAT6    --------->MYB52(1) -->MYB46(1)  ----------->GT1--------->AHL20(2)--------->YAB1      <----------DOF2--------->YAB1-----   aatttgtttgttgtactcgtaaattagtcataaaaattcgtctatataatcaaaattcacgacactcttctttcactaaacaaatcaaaacaacgatcaa  12950300                                                                                ------------>AtMYB77                                                                               ----------->HVH21                                                                               <---------ZAT6                                                                           <-------GAMYB                                                                           <------NtERF2                                                                          <---------MYB46(3)                                                        ----------->GT1   <---------DEAR3(2)                                                        <------NtERF2    <---------DEAR3(1)                        --------->AHL20(2)             --------->LBD16 <---------RAP2.3(1)                   --------->ANAC58                   *TSS            <---------RRTF1(3)                   --------->ANAC58                   <---------ANAC46<---------RAP2.3(2)                   ----------->GT1                    <---------ANAC58<---------RAP2.6(2)            <------------CBF                          <---------ANAC58<---------RRTF1(2) -->YAB1--------->MYB52(1)                           <---------LBD16 <---------At5g28300 -------->GT1      <----------ID1                --------->YAB1      <---------LBD16        xxxxxxxxx ----->DOF2--------->ATHB12            <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3) --------->MYB52(2)   aagaaaaaaaaaacgattgaaacgaaaaaaatagaaatttagtttattctataatggcgggaaactacaattacggcggtagtgacagtttctatcgaga  12950400                           <---------LBD16                          <---------O2                  <------ZmHOX2a(1)                          <---------bZIP60(2)         <---------TOE1(2)                        --------->MYB52(1)       <-----------HVH21                       ----------->TGA1         <---------ANAC55(2)                       ----------->HVH21        --------->ANAC46              <-------TEIL<---------ANAC46   <---------ARR14(2)             --------->CCA1(2)               --------->ARR14(2)                                    --             --------->ARR14(1)           --------->RAP2.6(2)                                      <-             --------->GLK1(2)          --------->At4g35610                                   <xxxxxx            --------->ARR11(1)          <---------At4g35610          --------->YAB1       <---------At4g35610 xxxxxxxxxxxxxx>smallRNA(i2)        <-----------HVH21<-----------RAV1(2)  <xxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)   ttggatgtataagagattcgatgaagtgacggggaatttgtcagccgaatacgtcgcaggagttgaagaattcatgacattcgctaatagtcagcctata  12950500             --------->At5g28300            ----------->GT1                  --------->YAB1    --------->ZAT14                <---------ANAC46    <---------ZAT14          ------>ZmHOX2a(1) ----------->GT1      <--------P ------->ZAT14      <---------AHL20(2)      --------->ICU4      <---------LBD16                   <-- --------ZAT14      <---------YAB1 <---------ZAT6               <---------ANAC46                 xxxx xxxxxxxxxxxxxxxxxxsmallRNA(se3) <---------ANAC46         <---------ATHB12<---------ZAT6       ------   gtacagagtagtcgaggtaaatttcattgtccttgtagtgtatgcaagaatgaaaaacaaatcatctcgggtagaagagttagtagtcatttgtttagtc  12950600                                                                                  ------->TEIL                                                                               <---------ANAC55(2)                                                                             <------ZmHOX2a(1)                      <---------ANAC46                                   --------->ARR14(2)     -----                   <-----------RAV1(1)                                   <---------ARR14(2)     <----             <---------YAB1                                           --------->ANAC58        -------             --------->ICU4                          --------->GLK1(1)--------->ANAC58       xxxxxxxx -------TOE2(3) <---------YAB1                       <---------GLK1(1)--------->ANAC46   <---------ZAT6 xxxxxxxxxxxxxxxxxxx>smallRNA(si3)         --------->ICU4            <---------LBD16 <---------AHL20(2) --->WRKY18(1)<---------ICU4  <---------AtLEC2------->TEIL     ----------->GT1 --------->ANAC55(2) <x   aaggatttatgcctgattattatgttgtataagcatggagaagaaatgaatatggatatcggaactagttacacggataggacgtattttagtgagaatc  12950700                           <---------------AGL15                          <-----------------AGL2                          ----------------->AGL2                          ----------------->AGL3                          <-------TEIL                               <---------ANAC46                          <-----------------AGL3                     <---------ANAC58                        --------->ARR14(2)                        --------->ALFIN1                        <---------ARR14(2)                      <---------ANAC58                        --------->ARR11(3)          ------->TEIL<---------ANAC58       <---------ANAC58                  --------->HSFB2a(2) xxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)          --------->ALFIN1                  <---------HSFB2a(2) xxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)        <---------ANAC58        <------MYB83<xxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)    <---------AHL20(2)    <---------ANAC58        <------MYB46(1) <---------ARR11(3)  <---------DOF5.7(2) <---------ANAC46  <---------ANAC46       <---------MYB46(3)<------ZmHOX2a(2) <---------WRKY38(1)  <---------O2      <---------O2 ------      --------->ALFIN1 xxxxxxxxxxxxxxxxxxxx>smallRNA(si3)  --------->YAB1    --------->YAB1   <------ ---->YAB1      <---------REM1(1)    --------->CCA1(2) <---------AHL20(2)   <---------YAB1  --------- -----ICU4   <-----------RAV1(1)    --------->ARR14(2) --------->AHL20(2) --------->YAB1   <---------YAB1 -->GLK1(2)  --------->ICU4--------------->AGL15  <-------TEIL <---------TOE2(3)  <---------bZIP60(2) xxxxxxxxxxxxxx>smallRNA(se3)   xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)<---------ANAC58  <---------ANAC46 xxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)<---------ARR14(2)--------->AHL20(2) <---------YAB1<---------ANAC58   atgaagaagtgggtaatgttgtagaagatccatatgtggatatggtgaacgatgcatttaattttaacgtggggtatgatgataacgtggggtatgatga  12950800                --------->MYB111(1)                <---------MYB46(3)              --------->MYB46(3)               <--------P                    <xxxxxxxxxxxxxxxxsmallRNA(i)            <---------YAB1                 --------->ANAC55(2)          <---------ICU4                <---------MYB52(1)       --------->YAB1                  <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)       <---------ICU4               --------->MYB52(1)      <---------YAB1  --------->YAB1<xxxxxxxxxxxxxxxxsmallRNA(i)    --------->YAB1    <xxxxxxxxxxxxxxxxsmallRNA(i) --------->AtLEC2   <---------YAB1 --------->ICU4   --------->ARR14(2) --->YAB1<---------YAB1   --------->GLK1(2)<---------ANAC55(2)                            >>>>>>>>>>> ---YAB1 --------->ICU4  <---------GLK1(2)<xxxxxxxxxxxxxxxxsmallRNA(s)               <xxxxxxxxxxxxxxx >YAB1--------->ICU4 <---------YAB1<---------ARR14(2)             --------->ANAC46<-------TEIL  <----   taactatcatcatgatggtagttatcagaatgtggaagaaccggtccgtaaccattcaaataagttctacgacttgttagaagatgcaaataatccattg  12950900  Previous    Next  AGI:  At1g35300.1    Description:  transposable element gene. CACTA-like transposase family (Ptta/En/Spm), has a 1.1e-38 P-value blast match to At5g29026.1/8-244 CACTA-like transposase family (Ptta/En/Spm) (CACTA-element) (Arabidopsis thaliana) Range:  from: 12950354    to: 12952860    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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