Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                              <----------DOF2                                --------->DAG2                         <-----------GT1                                  ---------->DOF2          --                --------->DAG2                                  ----------->GT1               ------- ---->DOF2     ---------->DOF2                                  <---------MYB46(3)   ----------->GT1<   aggccaaattacaaacaaaaagttttataactttgtttgctaatgtcgaaacacaaaataaactggtggtaacaaaaaaagtttctctagttaatctaaa  12893300                                      --------->HSFB2a(2)                                      <---------HSFB2a(2)                  <------ZmHOX2a(2)              <---------ICU4    --------------->AGL15              <-----------HVH21              --------->ATHB12 ----------------->AGL3           <---------At5g28300  ----------->RAV1(1)        --------->ANAC58                  <-----------GT1 ------->CCA1(2)          --------->DEAR3(2)               <--------P     --------->ARR11(3) --->DOF2     -------->ATHB1 --------->ANAC58         <---------LBD16     <---------ARR11(3)      <-- -------TEIL <---------YAB1  --------->ANAC46        <---------LBD16  <---------TOE1(1)           <--   gatacaacagttagaatcattggctcgaaccgagccacttagagaagttgtcaaactcggggtagtcactgtccgagatcatggtcttgtaccatgactt  12893400                                       --------->ANAC58           <---------ANAC55(2)                                       --------->ANAC58           <------MYB83            --------->YAB1        --------->ANAC58                <---------ANAC46       ------>ZmHOX2a(2) ------>ZmHOX2a(1)                        --------->At4g35610       =========================HOX2a_HOX2a                       <------MYB46(1)       ============================HOX2a_HOX2a                   --------->MYB59     <-----------ARR10  <---------ALFIN1                         --------->MYB46(2) <---------ZAT2       ------>NtERF2    --------->ANAC46          --------->MYB111(1)       ---------- --------->ZAT2--------->ATHB12   --------->ANAC58               --------->MYB111(2)--------->ANAC58 --------->At4g35610<---------ANAC58   <---------ALFIN1        <---------MYB52(1)   --------->ANAC58 <---------At4g35610<---------ANAC58 ----------->RAV1(1)   <---------MYB52(1)    <-------TEIL<------- -------ANAC58 <---------ICU4     --------->ANAC46        <----------DOF2---------->DOF2------------>MYB.PH3(1) -------ANAC58<---------YAB1------>ZmHOX2a(1)            --------->TOE2(3)    --------->CCA1(2)   ccctgctgatctaatcttcattgcctcctcctgtaaacgccacacaagttaacaaaaaacctttagttaggtgaacaaagagatgcaagaaaacagttat  12893500                                                            --------->CCA1(2)                                                           <---------ARR14(2)         --------->GLK1(1)                                 --------->ARR11(1)     --------->ANAC58                                      --------->ARR11(3)     --------->ANAC58                                    ----------->ARR10  <---------WRKY38(1)                                 --------->TOE1(3)  --------->ZAT14  --------->WOX13(1)                 --------->TOE2(3)  <---------ZAT18 ---------->DOF2               <---------YAB1 ->GT1   <---------CCA1(2)        --------->ZAT18   <---------ARR11(3)                    <----------DOF2 --MYB52(1) --------->YAB1        <-------TEIL<-----------GT1                     ------>ZmHOX2a(1)   ttagtgaacgcatatcaaaatcaagcagagcataagtgcataacaatattacaataccttagatatgggtttgctcttcttctccttcttagctttcact  12893600                                                                                   --------->ARR14(2)                                                                                   <---------ARR14(2)               --------->YAB1                                                      <---------GLK1(2)               <---------ICU4                        --------->TOE2(3)            <------ZmHOX2a(1)              <---------ATHB51                <------ZmHOX2a(1)                 <---------TOE2(2)              --------->ICU4            --------->YAB1    --------->MYB46(3)    <---------TOE1(2)<---              <---------ATHB12   <---------ARR11(3)  --------->TOE1(3)  <---------ATHB51       <-----         <---------At4g35610     --------->ARR11(3)<---------TOE2(3)--------->AHL20(2)      ---------   --------->At4g35610        --------->HSFB2a(2)  <---------TOE1(3)<---------AHL20(2)   --------->YAB1   <---------At4g35610   ------>ZmHOX2a(1)   --------->ICU4------->GAMYB<---------AHL20(2)  <--------   ctctgagcttcagccaataatgacatcctcttcgaggtcttagcataaggattaagcttaaccatcaaatttaaattattcgaaggattcttcataatca  12893700                                                             --------->ANAC46                                                             --------->ANAC58                                                         ------->GAMYB                                                         --------->AtMYB61                                                        <---------MYB55(2)                                                       -------->P                                                       ------>MYB83                                                       ------>MYB46(1)                                                      --------->ANAC46                                                      --------->MYB55(1)                                                     <---------MYB111(2)                                                     <---------MYB111(1)                                            --------->LBD16  --------->ANAC58                                           --------->LBD16 <---------ALFIN1                                       <-----------HVH21--------->MYB46(3)                                 <---------ALFIN1    <---------MYB46(2)                                --------->ZAT14      --------->MYB46(3)               <---------ZAT6                                <---------ZAT14      <---------MYB59                <------MYB83                                <---------ZAT18    ------->TEIL                     <------MYB46(1) ------ALFIN1               --------->REM1(1)<---------MYB52(1)                    <---------AtMYB61 ------GT1               *TSS --------->ANAC46    <-----------GT1               <-----------RAV1(1) >YAB1               <---------At4g35610  <---------LBD16<---------ALFIN1  --------->YAB1          <- -ICU4        ------>ZmHOX2a(1)<---------ALFIN1--------------->AtSPL8   <----------DOF2            --   cacctctcttcacatccttcttcatcggcttcaccacactctgtcccggtatgtaccaaccacactctacatttctttgatgatgttggtgttaatctca  12893800               ------>ZmHOX2a(1)           --------->ARR11(3)           <---------ARR14(2)                                                  --------->AtLEC2           --------->ARR14(2)                                         <------------ATHB5           <---------ARR11(3)                                         <--------ATHB1          <---------GLK1(1)                                           --------->YAB1          --------->GLK1(1)                                           <---------ICU4         --------          <---------CCA1(2)  ----------->GT1                         <---------ATHB12  ------>ZmHOX2a(2)        <---------ANAC58    --------->DAG2            --------->DAG2 --------->ICU4  <---------ARR11(3)        <---------ANAC58   ---------->DOF2     <----------ID1 <---------HSFB2a(2)<---------AtLEC2   < --------HSFB2a(2)    ------->TEIL    ------->GAMYB  ---------->DOF2 <---------YAB1  --------->ARR11(3) ------->HSFB2a(2) --------->ANAC46  --------->MYB46(3)       --------->HSFB2a(2)--------->YAB1     <   ccgagaagttgcatatcctctacgaatcgaaaagttacaaccgtctaaaacgagaaaaagggttctcgacaatgatggtccatgcatgatctcttggctc  12893900                                                                                    <------NtERF2                                                                                   <---------ORA47(2)                                                                                   <---------MYB46(3)                                                                                   <---------DEAR3(2)                                                                                  <---------DREB2C(2)                                                                          <-----------HVH21                                                                     <-----------RAV1(1)     <---------YAB1                                        <---------At4g35610    <---------DEAR3(1) -->ID1        <----------DOF2                          ----------->HVH21<---------DEAR3(2) ---------ANAC58                     <---------CCA1(2) <-----------HVH21--------->ETT(1) ---------ANAC58           <----------DOF2            --------->ALFIN1  <---------DREB2C(2)       <--   attcgtggtgatagtctctttggtcatacctttcatcccatctcttggttcgaacagtgtgacctgatcaattgtcggtcactggcggtgcaaatcagag  12894000                             --------->DAG2                            ---------->DOF2                         --------->ANAC55(2)                         <---------ANAC46                                                        ----                         --------->ANAC58                                                      ------                         --------->ANAC55(1)                                                 --------                         --------->O2                                                 <--------------                         <---------ANAC55(2)                                         <---------------                         --------->ANAC58                                         <---------GLK1(2)                        <-----------------------TaNAC69(2)                       <---------At4g35610               --------->AHL20(2)                                         ---------->DOF2   <--------             --------------->AGL15                          ----------->GT1     ----------->ARR10----             <---------------AGL15                       <---------MYB46(3) ----------->GT1<---------LBD16           <---------At4g35610                  ----------->GT1         --------->ANAC58 --------->ARR14(2)           --------->At4g35610     ---------->DOF2  ---------->DOF2     --------->ANAC58 <---------ARR14(2) -------ZAT2 ========================================================================================   agctcgtgatgtctgcttaaaatagtcacgtaaagtccaaagctattatgtggtaaaagttgttgttaaaaaacaagaaagtaagatgctcaatccggaa  12894100                                             <---------ZAT14                   <---------ARR11(3)        --------->ZAT14                   --------->ARR11(3)     <------MYB46(1)                   --------->ARR14(2)     <------MYB83                   <---------ARR14(2)     <---------DEAR3(2) ----->ANAC58      <---------GLK1(2)     <---------MYB46(3)               --------->ARR11(3) ---->DOF2       --------->ANAC58        --------->MYB55(2)             --------->MYB59 ->LBD16         --------->ANAC58        <---------DREB2C(2)       --------->DAG2 -AGL15          ----------->ARR10       <---------DEAR3(1)       ---------->DOF2 --AGL1      --------->ANAC58            <---------DEAR4(1)   --------->TOE2(3) -HSFB2a(2) --------->DAG2              <---------ORA47(1)   ----------->GT1 ----->ANAC58--------->ANAC58   ---------->DOF2       ----------->GT1   <---------TOE2(3)     ------- =MADS_MADS---------->DOF2---------->DOF2--------->MYB46(2)  <---------ANAC55(2) ---------->DOF2   aggaacatatggaaaaagcaagatactcaaaagcgaaagatggtcggtgaactgtttggaaaaacgtaaaaagtaaggtattcaaaagaaaacgaattat  12894200  Previous    Next  AGI:  At1g35200.1    Description:  60S ribosomal protein L4/L1 (RPL4B), pseudogene, similar to 60S ribosomal protein L4 (fragment) GB:P49691 from (Arabidopsis thaliana); blastp match of 50% identity and 6.3e-17 P-value to SP|Q9XF97|RL4_PRUAR 60S ribosomal protein L4 (L1). (Apricot) {Prunus armeniaca} Range:  from: 12893317    to: 12893725    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
	printer-friendly version