Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                    --------->ALFIN1                                  <---------REM1(1)                                  ----------->HVH21                         <---------HSFB2a(2)                                 <---------O2                         --------->HSFB2a(2)     <---------ARR11(3)          ===================bZIP_DOF                         --------->HSFC1(1)      --------->ARR11(3)          --------->O2          <-                         <---------------AGL15  --------->RVE1(1)            <---------TGA1a       <- -------->TOE1(2)        <---------HSFC1(1)     --------->CCA1(1)            --------->TGA1a      --- --NtERF2          <---------ARR11(3)     --------->ANAC58             <------ZmHOX2a(1)         <--- --PCF2            --------->ARR11(3)     --------->ANAC58   <---------MYB46(3)      <----------DOF2-   aacatatgagaagtctatgaagagcttctagaagaggtgaaggcacacaaatatctcttgtagccgttgaagaggactcacgagtgtctttagcaacaag  12755200            <-----------HVH21      ----------->HVH21      <---------ATHB12  --------->MYB46(3)                                                       --------->YAB1 --------->ANAC58                                                     <---------MYB52(1)          <-- --------->ANAC58                    --------->ARR14(2)               --------->DOF5.7(2)         <-- --------WRKY38(1)                   <---------ARR14(2)              --------->TOE2(3)            <-- --------WRKY12                    <---------MYB52(2)                --------->TOE1(3)  <---------ARR14(2) ------>WRKY18(1)                 --------->ANAC46                 <---------TOE1(2)    --------->ARR14(2) --------HVH21                    --------->ANAC58                 <---------TOE2(2)    <---------GLK1(2) -------->WOX13(1)  --------->YAB1--------->ANAC58       <----------DOF2--------->MYB52(2)    <------   gtcaaccaatgaccagtcactctcatcaccaagaccaaggaacctcttctcttatgtctctttcagtcttacgttaattgtaaacagccatattctcttt  12755300        ---------->DOF2      ----------->GT1                       <---------GLK1(2)     <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)                 <------MYB46(1)    <----------DOF2         <---------TOE2(3)              <------MYB83 -------ANAC58            ---------->DOF2                 --------->MYB59 -------ANAC58         --------->ANAC46               --------->ATHB12 -------ANAC46         --------->ANAC58              <---------YAB1--------->ARR14(2) ----DOF2              --------->ANAC58         --------->YAB1     <---------ARR14(2)            ----   gtgtgtctttaaaagcattgtaaacacacaaaggttactatctaattctatcaatatgatttggtctcatattctctcacatacaaactctcttgttctt  12755400                                      --------->YAB1                               <---------ARR14(2)                               --------->KAN4(2)                               --------->ARR14(2)                           --------->LBD16                         <---------LBD16                       --------->ARR14(2)                       <---------ARR14(2)                            <---------YAB1                  <-----------GT1  <----------DOF2               <----------DOF2             <----------DOF2 ---------->TaMYB80           <------ZmHOX2a(2)              <---------YAB1             --------->TOE2(3)<----------TaMYB80         <---------ARR11(3)   <---------ARR11(3) ----->YAB1 <---------ICU4<---------ANAC46               --------->ARR11(3)   --------->ARR11(3)   cataactctcttaatctttaatacaattccgcatattctttcatggtatcagagcttaagatcatgtctttatgcttataaatcttctattctcattcta  12755500                                                    ------>MYB83                                                    ------>MYB46(1)                                                   ----------->RAV1(1)                                                   --------->MYB52(1)                                                  ------->GAMYB                                    <X                                               <-----------GT1                               --------                        <---------ICU4     <----------DOF2               <---------ICU4      --------                       <---------YAB1  <---------CCA1(2)        <---------DAG2        <---------ANAC58              <-----------ARR10      --------->REM1(1)          <----------DOF2 <---------MYB52(1)*TSS             <---------CCA1(2)      <-------TEIL --------->MYB46(3)   --------->YAB1  <---------ANAC58   ttcttcattttctccaaatctcttcatcattctctagcttcatctcttttaaccaacagataatagctttattcatcagtccgtttgtgcttgaatcatg  12755600                                                  ------>MYB83                                                  ------>MYB46(1)                                                <---------------AGL15                                                <---------MYB46(2)                                                <---------MYB111(2)                    <---------ANAC58                                                <---------MYB59                        <---------MYB46(3)                                                <---------MYB111(1)                <---------AtMYB61                                               ----------------->AGL1            <-----------RAV1(1)                                               <-----------------AGL1            <---------ANAC58                     <---------ZAT14       --------->HSFC1(2)                    <---------ANAC46                --------->ICU4         ----------->GT1                 --------->MYB52(1) <---------ZAT18           ----------->GT1     <---------------AGL15             ----------->RAV1(1)   <---------ANAC58 XXXXXXXXXXXXXXXXXXXMIR2938    --------------->AGL15     --------->WRKY18(1)     <---------ANAC58 ->YAB1 ---------->DOF2        =================================MADS_MADS   --------->ALFIN1  <------ ->ATHB12 --------->DAG2--------->At5g28300<---------HSFC1(2)   <----------ID1 <---------ANAC46   gagacttctcaaaaggtgattactacggtgatacttcaagggggaaactacctaacttggtcaagaacaacaaaaacggtgttgtgtggtcgtgggcttt  12755700                                                                         ----------->GT1            -                                                                       ==============================HOX2a_HOX2a                                                                 <---------LBD16                    -                               <----------ID1    --------->MYB52(1)    <------ZmHOX2a(1)        <xxxx                          ---------->DOF2       --------->ARR14(2)  --------->LBD16           =======                   --------->ANAC58             <---------ARR14(2) --------->LBD16            <------ZmHOX2a(2)                   --------->ANAC58          >>>>>>>>>TBF1   --------->ARR11(3)              <-------              --------->At4g35610         >>>>>>>>>TBF1      <---------ARR11(3)              -------- ----DOF2     <---------At4g35610  ---------->DOF2          <---------CCA1(2)               <------ZmHOX2a(1)   ggagccatgtaatctcatctcaagctccaaaagaagacaaagaagaagaagaaacggagactatatctcccgaggaagaaaaatggttccaagaggatca  12755800     ------>ZmHOX2a(1)    <---------ANAC58    <---------ANAC58 <---------RAP2.6(3)                                                                --------->CCA1(2) -------->DEAR3(1)                                                                 <---------ARR14(2) -------->RAP2.6(2)                             --------->ARR14(2)                 --------->ARR14(2) xxxxxxxxxxxxsmallRNA(i)                        <---------ARR14(2)             <---------ANAC46 ===========HOX2a_HOX2a                  <---------HSFB2a(2)          ---------->DOF2<-------TEIL ----ARR10                               --------->HSFB2a(2)       --------->At4g35610           ---- ->ARR11(3)                      --------->TOE2(3)        <---------ZAT6     --------->ALFIN1    <---   agccgtccttgctcttcttcaaaactctcttgaaacctctattctagagggatactcttactgtgagacagcaaaagagttgtgggatacacttaaaaac  12755900                           ------->MYC3        --------->ANAC58   <-------MYC3               ------->GAMYB                       <----------DOF2        --------->ANAC58  <---------ANAC46          <---------TOE2(3)          --------->ZAT18 --->MYC3                --------->LBD16           <-----------GT1             <---------ZAT14 <----- ----MYC3  ------->TEIL<---------LBD16             --------->MYB52(1)      XXXXXXXXXXXXXXXXXXXX>MIR781   gtgtatgggaacgaatcgaatttgacccgcgtgtttgaagtgaagaaggcgattaacgaactaagtcaagaagacttagagtttactaaacactttggta  12756000                                                                       <---------ANAC58                                                                       <---------ANAC46                                                                      <-----------------------TaNAC69(2)                                                                    --------->DAG2                                                         --------->GLK1(2)                                                        <---------ARR14(2)                                                        --------->ARR14(2)                                                        --------->ARR11(3)                                                        <---------GLK1(2)                                          --------->ANAC58      --------->ANAC46                                          --------->ANAC58      --------->ANAC58                                      <------NtERF2     <---------ARR11(3)                                     <------NtERF2     --------->HSFB2a(1)                                     --------->LBD16   <---------HSFC1(2)                                    <---------LBD16    --------->HSFC1(2)                                   <---------LBD16     <---------HSFB2a(1)     --------->ANAC58                                  ------>NtERF2       ----------->ARR10<---------ANAC58                            <---------ANAC58        --------->LBD16 xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)        ------>ZmHOX2a(1)   <---------ANAC58   <---------WRKY18(1)---------->DOF2   <---------At4g35610    <---------ARR11(3)  ----------->HVH21 --------->ANAC58       --------->ALFIN1 ---P   --------->ICU4    --------->ARR11(3)  --------->WRKY12 --------->LBD16 --------->ANAC58    --   agttcaggtccttatggtctgaacttaagagcttgaggccgggaacgcttgacccgaagattctccacgaaaggcgtgagcaagacaaggtgtttggact  12756100  Previous    Next  AGI:  At1g34967.1    Description:  transposable element gene. copia-like retrotransposon family, has a 8.6e-83 P-value blast match to GB:CAA72989 open reading frame 1 (Ty1_Copia-element) (Brassica oleracea) Range:  from: 12755598    to: 12759824    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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