Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                  <-----------GT1                        <---------ANAC58          --------->ANAC46     <-----------GT1       --------->ZAT18  <---------ANAC58                                     <-----------GT1       <---------ZAT18 <-------TEIL               ---------->DOF2        <---------AHL20(2)    <------MYB46(1)   --------->ARR11(3)       --------->ANAC46          --------->AHL20(2)    <------MYB83   <---------TOE1(3)       <---------AHL20(2)        ----------->GT1                <   --------->MYB59 <---------TOE2(3)--------->ANAC46   --------->CCA1(2)--------->AHL20(2)<---------TOE2(3)   agagtttggtccacaaaatttaaggttcttgtttttccactctatttataggcaaagagatgagacagagaagattaaattacttcttaacaaaggttgt  12763500                                                                                  --------->ANAC58                                                                                  --------->ANAC58                                                                              --------->ANAC55(2)                                                                              --------->ANAC58                                                                              <---------ANAC55(2)             <-------TEIL                                                     --------->ANAC58           ------->MYC2                                                      <-------TEIL           <-------MYC2                                                   <------MYB83 --------->ANAC58           ------->MYC3                                                   <------MYB46(1)           <-------MYC3                                                  --------->MYB59        <---------ALFIN1                                                 <---------------AtSPL8        ------->GAMYB        <---------At4g35610                         <---------------AtSPL3        ========================MYC_MYB                            --------------->AGL15       --------->MYB46(3)    --------->At4g35610<---------GLK1(2)  <---------------AGL15  --------->ANAC58    <---------TGA1a           <---------ARR14(2)<-----------------AGL3  --------->ANAC46    --------->O2              --------->ARR14(2)<-----------------AGL2  --------->ANAC58    <---------O2------>ZmHOX2a(1)               <-----------------AGL1      <------ -----------GT1       --------->TGA1a      --------->LBD16        <-----------------AG --------->ANAC58   tttcactcaaccacatgcattctcaagtgtctgctcctcacattccccaagattcccatttactcacttctctatttggtacgtaagtcacacaatatga  12763600       <---------YAB1                                                             --------->At5g28300      --------->AHL20(1)                                                         ----------->GT1     --------->AHL20(2)                                                         --------->MYB59     <---------AHL20(2)                <----------DOF2                     <---------YAB1    <---------AHL20(1)                <---------ANAC58                     <---------AHL20(2)    --------->AHL20(2)                <---------ANAC58  --------->TOE2(3) <---------AHL20(1)        -    <---------AHL20(2) <---------MYB52(1)        <---------ANAC46         --------->AHL20(2)      <-- ---YAB1  <-----------GT1    <---------ZAT18  <----------DOF2             --------->YAB1         <---   ttctaaattattttacacattattcgttttgttcacacttgctttcgactttcgtaaacctatatagttcatccaatattattcggtaaattcgatattt  12763700                                             ------>ZmHOX2a(2)                                            <------ZmHOX2a(2)                                           <---------ARR14(2)     <---------ICU4                                           --------->ARR14(2)     --------->ATHB12                                           --------->ARR11(3)    <---------YAB1                                           <---------ARR11(3)    --------->ICU4                                      --------->TOE1(2)        --------->ATHB12                                     --------->O2   <---------ANAC55(1)                                     <---------ANAC46  <---------ARR14(2)                                     ===================================================bZIP_DOF                                     <---------ANAC58  <---------ARR11(1)                <------MYB46(1)      --------->TGA1a<---------ANAC58                <------MYB83         <---------ANAC58 <---------CCA1(2)                        <-----           <---------HSFB2a(2)       <---------O2   --------->ANAC55(2)                        ------    ===========================================bZIP_DOF--------->ARR14(2)                      ------    <----------DOF2                  <---------ANAC55(2)      <---------YAB1                   <-----   <---------ICU4                    <---------TGA1a<---------ANAC55(2)                       -------   --------->YAB1              <---------WOX13(1)   <---------ANAC58                      --------->ICU4  <---------ATHB12  ---------->DOF2  <---------ANAC55(1)      --------->ICU4     --------->ARR11(3) -------->WOX13(1)  ===========================bZIP_DOF------->TEIL        <---------YAB1 <---------ATHB12 -------YAB1   <---------TOE1(2)     --------->ANAC55(2)    <---------AtLEC2 ---------->DOF2--------- --------GT1   <---------TOE2(2)    <-------TEIL    <---------ANAC46<---------YAB1 <------------CBF<-   atcaatctttattctcgtaggttaaaggagacgattgatacgtgggatctacttacgtatctgcatgattattagttataaaagttattgcaaacattaa  12763800                            <---------TOE1(3)                            <---------TOE2(3)                       <---------YAB1                      --------->AHL20(2)       ----------->TBP                      <---------AHL20(1)      <---------AHL20(2)                      <---------AHL20(2)     --------->AHL20(2)                      --------->AHL20(1) --------->AHL20(1)                     --------->AHL20(2)  --------->AHL20(2)                      --------->GLK1(2)     --------->YAB1 <---------YAB1       <---------AHL20(2)                     --------->ARR14(2)  <----------DOF2 -------->ATHB1        --------->AHL20(2)                      <---------ARR14(2) ----AHL20(1)     <--------HAHB4        <---------AHL20(2)                      <---------ARR11(3) --->AHL20(1)     <---------ICU4    <---------AHL20(2)                      ---------->DOF2 --->AHL20(2)     --------->YAB1    --------->AHL20(2)         ---------->DOF2  <---------GLK1(2) ----AHL20(2)    <---------ATHB12  <---------AHL20(2)         <---------AHL20(2)--------->ARR11(3) -->AHL20(2)     --------->ICU4    <---------AHL20(1)       --------->CCA1(2)   *TSS >TOE2(3)    ------------>CBF----------->GT1<---------YAB1 <---------ARR11(3) ----------->ARR10  <--- ----------GT1 --------->WOX13(1)  --------->AHL20(2)    --------->ICU4---------->DOF2           <---   attactttcatagagagcaatcattatattaaggtaatttaattttattatatatagtcaagatttaaaggaataaagaaaagattctcaaaacatttca  12763900                                                     --------->ARR14(2)                                                     <---------ARR11(3)                                                    <---------GLK1(1)                                                    --------->GLK1(1)                                                   <---------ARR11(3)                                                   --------->ARR11(3)<---------At4g35610                                               --------->ANAC46      --------->At4g35610                                            --------->ZAT14   --------->ARR11(3)                                        <---------ALFIN1      <---------ARR11(3)                                        --------->AtMYB61   --------->ANAC58                   <---------ALFIN1    --------->MYB46(3)   --------->ANAC58        --------->MYB46(3)           <---------ALFIN1--------->ARR11(3)--------->HSFB2a(2)      ----------->RAV1(1)            --------->AtMYB61   ------>ZmHOX2a(1) ------CCA1(2)    --------->ANAC46   --------->ANAC46<---------ARR14(2)<---------HSFB2a(2) ------At4g35610<-----------GT1     --------->MYB46(3)  --------->TOE2(3)           --------->ANAC46   tctctctccaacaactattcaccacattcaatggagtcaccaccactatacgagatatcctcaagctcttcttctgaaaaacctagacaccatttccaat  12764000                       ------->GAMYB                 --------->TOE1(3)                 --------->TOE2(3)           --------->HSFB2a(2)                               <---------At5g28300     ------>ZmHOX2a(2) --------->AtMYB61                  <----------DOF2 ------>ZmHOX2a(2)   <---------ARR11(3) --------->MYB46(3)      --------->TOE2(3)   <----------DOF2   cccttgatctcttccctaacctcaaccaaaactcttgtatcaacaataccctaattgagcctttaccgcttattgatcgcataaacttgaactcaaacct  12764100                                                                               <-------PIF5                                                                               ------->PIF5                                                                              <---------ANAC46                                                                          --------->ALFIN1                                                           >>>>>>>>>TBF1<---------bZIP60(2)                                                        >>>>>>>>>TBF1   <---------ANAC46                       --------->ANAC46              >>>>>>>>>TBF1    --------->ZAT14       --------->TOE2(3)        <------ZmHOX2a(1) >>>>>>>>>TBF1       <---------ZAT14       --------->TOE1(3)--------->LBD16       <------ZmHOX2a(1)       --------->REM1(2) <---------MYB59      <---------LBD16      <------ZmHOX2a(1)         <---------MYB52(1)   --------->ANAC46   agacctaaaccctaatcccttgtatgcggaagaaggagagcaagaggaggaagaagaagaagaagaagaccgtgaagtggacgtggacttacacatcggc  12764200                                                                             --------->RAP2.6(2)                                                                             --------->LBD16                                                                            <------NtERF2                                                                           <---------RAP2.3(1)                                                                           ------>NtERF2                                                                       ----------->HVH21                  ------>MYB46(1)                                ----------->RAV1(1)                  --------->ANAC58                            ------>ZmHOX2a(2)           --------->HSFB2a(2)                  --------->ANAC58                           <------ZmHOX2a(2)            <---------HSFB2a(2)                  ------>MYB83                              --------->ARR14(2)          <------NtERF2  <---------------AGL15            <---------At4g35610      --------->ARR11(3)     --------->DAG2  --------------->AGL15   <---------YAB1                    <---------ARR14(2) <------NtERF2  ------>ZmHOX2a(1)<---------ATHB12--------->At4g35610      <---------ARR11(3)--------->LBD16  --------->LBD16 --------->ANAC46 --------->ZAT2          <---------GLK1(1)<---------LBD16 <-----------------AGL2 --------->YAB1                     --------->GLK1(1)<-----------------AGL1  < <-----------------AGL1--------->ICU4                    <------ZmHOX2a(1)<---------bZIP60(1) <------ <-----------------AG  <---------ATHB12         --------->CCA1(2)<---------ALFIN1---------->DOF2  ---   cttcctggttttggtaaaccaagcaatgatgctaaacagctgaagaagagaaatgggaaggagatcgccacatatgacgccggaaaaggcatcgagaatg  12764300                                <------NtERF2                               --------->LBD16                              --------->DEAR3(1)                              <---------DEAR3(1)                             --------->ATERF1(1)                             <------NtERF2                             --------->RAP2.3(1)                             <---------LBD16                            <---------RAP2.3(1)                            <---------ERF1                            ------>NtERF2                            <---------ATERF1(1)                            <---------RAP2.6(1)                            <---------RRTF1(1)                           <---------DEAR3(1)                           --------->DEAR3(1)                          --------->RAP2.3(1)                          --------->ERF1                          --------->ATERF1(1)                          --------->RRTF1(1)                          <------NtERF2                          --------->DEAR4(2)       ---------->DOF2    --------->RAP2.6(1)       --------->ARR14(2)<---------ATERF1(1)       --------->ZAT14       <---------ARR14(2)------>NtERF2             --------->ZAT18     --------->LBD16     --------->LBD16           <---------ZAT18    --------->HSFB2a(2) --------->ANAC46           <---------ZAT14    <---------HSFB2a(2)<---------LBD16             <-------TEIL                    <---------ARR11(3)   <---------LBD16    ------>ZmHOX2a(2)   <---------YAB1       <---------ANAC58  --------->ANAC58 ----------DOF2      <------ZmHOX2a(2)<---------GLK1(2)<---------ATHB12  ------->TEIL ---KAN4(2)         <---------ARR14(2)<---------ARR14(2)       <---------ANAC58  --------->ANAC46 ---->TEIL          --------->ARR14(2)--------->ARR14(2)     <-----------GT1     --------->ANAC58----   aactttccggaaaggcatactggatcccggcgccggagcaaattctcatagggttcactcatttttcttgccatgtatgcttcaagacattcaatcgcta  12764400  Previous    Next  AGI:  At1g34790.1    Description:  TT1 (TRANSPARENT TESTA 1); transcription factor. Identical to Protein TRANSPARENT TESTA 1 (TT1) [Arabidopsis Thaliana] (GB:Q8VWG3;GB:Q8VWL1); similar to zinc finger (C2H2 type) protein (WIP5) [Arabidopsis thaliana] (TAIR:AT1G51220.1); similar to hypothetical protein [Vitis vinifera] (GB:CAN67026.1); contains InterPro domain Zinc finger, C2H2-like; (InterPro:IPR015880); contains InterPro domain Zinc finger, C2H2-type; (InterPro:IPR007087) Range:  from: 12763880    to: 12765616    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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