Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                          <---------AHL20(2)                                                                        --------->AHL20(2)                                                        --------->GLK1(2)                                --------->AHL20(2)     <---------ARR11(3)--------->ATHB12                    --------------->AtSPL3  <----------DOF2       --------->YAB1                    <---------------AtSPL8 xxxxxxxxxxxxxxxx>smallRNA(i) <---------AHL20(1)          <                    --------------->AtSPL8 xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(l2)         <---------AtLEC2         <---------AHL20(2)     <---------AHL20(2)     --------->ARR11(3)<---------AHL20(2)        <- ----MYB46(3)      ---------->DOF2 ---------->DOF2   ----------->ARR10  --------->AHL20(1) ----------   ttcgacactaagtaattgagtaaaagtactccatttaaaaagagcgttttttggtgagattttggtattcaaaatttattggatttgtttgtatggaaat  12710800              --------->MYB52(1)            <---------MYB52(2)       --------->YAB1                                                       --------->YAB1       -------->HAHB4                                                       ----------->GT1       <---------ICU4                                                     <---------WOX13(1) --------     <---------TOE2(3)                                                  --------->ATHB12     <-------    --------->YAB1                                                     --------->ICU4      --------->ARR14(2) ----------DOF2    <---------ARR14(2)      <------ZmHOX2a(1)  --------->HSFB2a(2)          <---------ARR14(2) ----------------AGL3                   <-----------RAV1(2)   <---------HSFC1(1)       <---------HSFB2a(2) ->GT1<---------YAB1          <---------YAB1<---------ARR11(3)<---------HSFB2a(2)      --------->HSFB2a(2)   aacttttaatgataactaacaaatatggttttgtcattaacttcaggatatatcgcaaaacattccagaagcattgattgataaaaattcgcgaatatcg  12710900                                                              <---------At5g28300                                                             <-----------GT1                                                      <---------MYB52(1)                                                     --------->LBD16                                                    <---------ANAC58                                                    <---------ANAC58                                                    <---------ANAC46                                                   ------>ZmHOX2a(2)                                                   <-------TEIL                                                  <------ZmHOX2a(2)                                                  --------->CCA1(2)                                                 --------->ARR11(3)                                                 <---------ARR11(3)                                                 --------->ARR14(2)                          <xxxxxxx                                                 <---------ARR14(2)                   <---------ETT(1)                                                <---------HSFB2a(1)                   ----------->HVH21                                                --------->HSFB2a(1)                  ------>ZmHOX2a(2)                                                --------->GLK1(1)                   --------->CCA1(2)                                                <---------GLK1(1)                   <------ZmHOX2a(2)        --------->AHL20(2)               <---------SPL7    <----------DOF2         --------->ARR14(2)   <------ZmHOX2a(2)                    <---------ANAC58<---------ANAC58           <---------ARR14(2) ->ARR11(3)                             <---------ANAC58<---------ANAC58           --------->AGP1 --ARR11(3)                <---------MYB59     ----------->ARR10                 ----------->ARR10  <   tttggatcaaatatatgtgttaatcgggacctaaatcccatgacttacgaagatccgtgcgttttaccgaatgactatcgatttagatccgaccagtaac  12711000      --------->LBD16     <---------ANAC46                                                             --------->YAB1     <---------ANAC58                                             --------->AHL20(2)     <---------ANAC55(2)            <-----------GT1               <---------AHL20(2)     <---------ANAC58         <---------AHL20(2)                  ----------->TBP <---------ICU4  <--     <---------ANAC55(1)     <---------AHL20(2)                 <----------DOF2  --------->ICU4  ----    ------>ZmHOX2a(2)     --------->AHL20(2)     --------->ARR11(3)              <---------YAB1 <---- xxxxxxxxxsmallRNA(s)     <---------AHL20(2)     <---------ARR11(3)            --------->YAB1  ------ ---------ATHB12----------->HVH21  <-----------GT1     <---------YAB1       --------->YAB1  ------>ZmHOX2a(1)   ccatgatccgtgtgtcaattgacagcaattttttattttacccttccatgaaatcttttgattactctttaaatgcaaaaatcataatgacatcctatat  12711100        <----------DOF2<---------AHL20(2)       --------->TOE2(3)       <---------DAG2  --------->AHL20(2)   <---------AHL20(2)                                    ---    <-----------GT1   <---------AHL20(2)    --------->AHL20(2)                                    <-- -------AHL20(2)----------->GT1            <---------ATHB12*TSS                 <----------ID1    <-- ----->YAB1--------->YAB1  <---------AHL20(2)      <---------ZAT14        <----------DOF2        <--- -----AHL20(2) <---------TOE1(3)           --------->AHL20(2)       <-----------GT1              ---- --->AHL20(2)  <---------TOE2(3)       ------------>CBF  <-------TEIL<-----------GT1   ---------->DOF2   aatattcaaccttttataaggttatttattttttagtgattcccaattaatagtatagtttcattcgatatttcccctttagaagacaaataagcacatt  12711200            --------------->AtSPL3    <---------ANAC55(2)    <---------ANAC58                                                  ----------->GT1    <---------ANAC46                                                 --------->LBD16    <---------ANAC58                                                <---------LBD16    --------->ANAC55(2)                                             <---------ANAC46    <---------ANAC55(1)         xxxxxxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)  <-----------GT1           --------->ANAC46<---------ARR11(3)     <---------LBD16 ------>AHL20(2)           -------->P       --------->ARR11(3)    <---------At5g28300 -------AHL20(2)        <---------DAG2 --------->HSFC1(1)         --------->MYB52(1) -------YAB1--------------->AtSPL8     <---------HSFB2a(2)--------->TOE1(3) ------AHL20(2)         <---------MYB59--------->HSFB2a(2)--------->TOE2(3) ----->AHL20(2)   <---------------AtSPL3   <---------GLK1(1)     <-----------GT1       <----------DOF2   ttaattacgttttagatgtactagtaccttaccccatccatctagaaatcttggttcaaaccttatattaccgggtaaaaaatgcctctctttgcaacta  12711300                            <---------YAB1      ---------->ID1                       --------->YAB1       <---------ANAC58                    --------->YAB1        <-----------GT1                 --------->YAB1       <---------ARR11(3)               --------->AHL20(2)     --------->ARR11(3)--------->AHL20(2)                        <--             <---------AHL20(2)------->TEIL <---------ANAC58                                   <-----      <-----------GT1  <---------ICU4 <---------GLK1(2) <---------AHL20(2)                 <---------AHL20(2)   gaagaatttttctattttaaaataatcaatatgaatccaagatttttcttgttcttatataattttcatgtgtatgaatactaatccatccatttttttt  12711400                                                                                <---------ICU4                                                                               --------->ICU4        --------->ANAC58                                                     ---------->DOF2      <--        --------->ANAC58<----------DOF2                                  ----------->GT1       <-----    --------->AtLEC2    <---------DAG2                               --------->DAG2    --------->ANAC46 --------DOF2   <---------YAB1                                      ---------->DOF2    --------->ANAC58 ------GT1    --------->YAB1             --------->YAB1       ----------------->AGL3   --------->ANAC58   ctttctatgcaagcatttataatcggcttttttttttgtgcaaacatagttgtattcattcagacccaaaaaaaggggttaaagattacaagcccttcca  12711500                                              <---------At4g35610                                       <---------bZIP60(2)     ----------->GT1        <---------PCF2              ----------->HVH21         --------->DAG2   --------->ALFIN1     --------->ALFIN1 <-------TEIL--------->At4g35610        ---------->DOF2 <-----------RAV1(1) ---------->DOF2    <---------SPL7--------->ZAT2       ------>MYB46(1)       --------->ALFIN1       < --------DOF2     ------->TEIL    <---------At4g35610  ------>MYB83        --------->ZAT2    <------- ----ALFIN1 --------->ICU4  <------ZmHOX2a(1) --------->At4g35610    <----------ID1          --------   ctttaaagtgggacataatgaacgtacagaggaacaagctgacatggaagctaaaccaaacaaaaaagtaaacaacaagctgtggcgatagagtcatgaa  12711600                                                           <---------TGA1a                                                           --------->TGA1a                                                           --------->ANAC58                                                           --------->O2                                                           --------->ANAC58                                                           <---------O2                                              <---------ANAC58             --------->HSFB2a(2)                   --------->ANAC58           <---------ANAC58  <---------------------WRI1                   --------->ANAC58     <-------TEIL      <-------TEIL     <---------HSFB2a(2)                  --------->DAG2 --------->ANAC46   ---------->DOF2   --------->ATHB12 ---------LBD16  ---------->DOF2 --------->ANAC58   =================bZIP_DOF <------ZmHOX2a(1) --YAB1 ---------->DOF2   --------->ANAC46    <---------ANAC46<---------DEAR3(1) ->AtLEC2   ----------->GT1      --------->ANAC58<-----------HVH21   <---------ATHB12   aactcggagacaaaggctaaaaagcaatatgccacaagcgagttcatggtgtgtcaaaggcacgtctgcgaatgattcgaggagattacaagtagtcact  12711700  Previous    Next  AGI:  At1g34680.1    Description:  pseudogene, ribosomal maturase, blastp match of 66% identity and 1.8e-18 P-value to GP|12002339|gb|AAG43301.1|AF144332_1|AF144332 maturase K {Arabis lyallii} Range:  from: 12711159    to: 12711433    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
	printer-friendly version