Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                <---------ARR11(3)                                                              --------->ARR11(3)                                                              --------->AHL20(1)                                                --------->AHL20(2)                                              --------->YAB1  --------->AHL20(2)                                             <---------AHL20(2)                                         --------->AHL20(2)   <---------AHL20(2)                   <-                                     --------->AHL20(1)   --------->AHL20(2)        <---------ATHB12                                     <---------AHL20(2)   <---------AHL20(2)       --------->GLK1(2)                                     --------->AHL20(2)  --------->AHL20(2)   --------->ANAC58     <-                                    --------->AHL20(2)--------->AHL20(2)      --------->ANAC58     ==                                --------->AHL20(1)   <---------AHL20(2)       --------->ANAC46     <-             --------->ICU4     <---------AHL20(1)   --------->AHL20(2)      <-------MYC3          <-             <---------YAB1     --------->AHL20(2)   <---------AHL20(1)      ------->MYC3          <-           --------->YAB1       <---------AHL20(2)   --------->AHL20(1)xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)   <-------MYC3                <---------AHL20(2)--------->AHL20(2)    ----------->HVH21        -----   ------->MYC3                --------->AHL20(2)<---------AHL20(2)   <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)  <---------O2           --------->TOE2(3)<---------AHL20(2)  <---------AHL20(1)  --------->WOX13(1)  --------->O2      <---------AHL20(2)   <---------AHL20(2)--------->AHL20(2)<-------MYC2     ------- ------->HVH21 <---------ARR11(3)   <---------AHL20(2)<---------AHL20(2)     ------->MYC2     <------   tgacacatgtctctcatgatttttaattcttaaataaattaaattaaataataaataaaattaatatattgatgtgacacatgccaatctatctactgct  12692600                          <---------WRKY12                          <---------WRKY38(1)                          xxxxxxxxxxxxxxxx>smallRNA(i)          <------ZmHOX2a(1)      <------NtERF2       <---------WRKY45     xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)    <---------ANAC46     <<<<<<<<<<WRKY6   <---------LBD16       <<<<<<<<<<WRKY38                                                        ---- --------ANAC58          <<<<<<<<<<WRKY43          <---------ARR11(3)                      xxxxxxxxxx --------O2              <<<<<<<<<<WRKY26          --------->ARR11(3)                    <---------AHL20(2) =============================MYC_MYB          ---------->DOF2                           <---------YAB1 --------bZIP60(2)       <<<<<<<<<<WRKY11  --------->YAB1                               <---------AHL20(1) --------ANAC58          --------->WRKY18(1) <---------YAB1                             --------->AHL20(1) --------TGA1a         <------MYB83 --------->ARR14(2)                                  --------->AHL20(2) ------>HVH21          <------MYB46(1) <---------YAB1                                --------->AHL20(2) -->At4g35610        <--------P     <---------ARR14(2)           <-----------GT1   --------->AHL20(2) ---At4g35610<xxxxxxxxxxxxxxxxsmallRNA(i) <---------YAB1     <----------DOF2   ----------->GT1-------   gacttggcggaaggatgaagagagttggtcaacttgcatatatgattataaaagataattcttctttttactgaaatagaattgaaaaaatataattcat  12692700     <----------DOF2                                                   <---------AHL20(2)    --------------->AGL15                                              --------->AHL20(2)    <---------DAG2                 --------->GLK1(2)                   <---------AHL20(1)    <---------------AGL15          --------->ARR11(3)  <---------------AGL15             ------>ZmHOX2a(1)    ===================================================================MADS_MADS  <---------GLK1(2) <-----------GT1          --------->DAG2              ----------------->AGL2      <---------ARR14(2) ----->AHL20(2)          ---------->DOF2 --------->YAB1--------------->AGL15      --------->ARR14(2) xxxxxxxxxxxxx>smallRNA(se3)       <---------ARR11(3) <-----------------AGL3     <------ZmHOX2a(1) -->YAB1  <---------TOE2(3)   ----------->GT1         ----------------->AGL3   <---------TOE2(3)   aaattaccttttaatgtaatgtccccaaaaagttgaaaatctataatgagatttattccataaatagttctattttattttgaggattctcctactagtt  12692800                                     <---------AHL20(2)                                    --------->AHL20(2)                                    <---------AHL20(2)                                --------->AHL20(2)                                <---------AHL20(2)                             <---------ICU4                             <---------AHL20(2)                            --------->AHL20(2)                      --------->YAB1                          --------->YAB1                            --------->ANAC55(2)                         <---------YAB1                   --------->GLK1(2)<-----------GT1                        --------->AHL20(2)                <---------ARR11(3)                        --------->AHL20(1)                --------->ARR11(3)       <------------CBF                        <---------AHL20(1)         ---------->DOF2  --------->ANAC46           ------       <---------WOX13(1)<---------AHL20(2) ----------->HVH21<----------DOF2   ------>ZmHOX2a(1)   gccttactaattgaaactaaatgcaatataataaatatttaaattggtgacccaaaagaaaatcttttatacataattttcctaatattgtgttctatta  12692900                                               <---------GLK1(1)               <----------DOF2   <----------DOF2         --------->ANAC46     --------->ARR11(3)   <----------DOF2       <------MYB83               -       <---------AHL20(2)     <---------ARR11(1)<---------ARR11(3)       <------MYB46(1)            <     ----------->TBP          <---------ARR11(3)--------->ARR11(3)       *TSS            <---------GLK1(2) --->YAB1<-----------GT1     <---------CCA1(2) <---------CCA1(2)        <---------MYB46(3)         --   gaattctatataaacaacttttaagttgttcatatctttgaagtttttgatatcttttgtatttttgtttttagtgggtataagaaaaatggattctagc  12693000                                               <------NtERF2                                              ------>NtERF2                                              <---------ATERF1(1)                                             --------->RRTF1(3)                                             --------->ANAC46                                             --------->DEAR3(1)                                             --------->RAP2.6(2)                                             --------->DREB2C(2)                                             --------->RRTF1(2)                                             --------->ATERF1(2)                                             --------->RAP2.3(2)                                             --------->RAP2.3(3)                                 <---                                             <---------ATERF1(2)                          ------>ZmHOX2a(2)                                            --------->RAP2.3(1)                          <------ZmHOX2a(2)                                            --------->ERF1  --------->YAB1              --------->ARR14(3)           >>>>>>>ZML2                      --------->ORA47(2)                          <---------ARR14(3)        --------->AGP1                     <---------ATERF1(1)                          --------->ARR11(3)  <---------YAB1                          ------->GAMYB     <---------ICU4              <---------ARR11(3) -------->YAB1                           --------->MYB46(3)<---------ATHB12           ----------->ARR10 ---------ICU4                        --------->MYB46(3)   --------->ICU4            --------->SPL7-- ------->ICU4 <---------ZAT6        ----------->RAV1(1)  --------->YAB1           ----------->GT1<---   cataatgacagttctagtgatgaagagggtattgactccaacaatcgccgccatcactctaatcatcaagttcaaaggctcgaagcgtaagatcttaatt  12693100              <---------RVE1(1)             <---------GLK1(2)             --------->ARR11(3)           <---------TOE2(3)      <---------AHL20(2)      --------->AHL20(2)     <---------AHL20(1)     <---------AHL20(2)     --------->AHL20(2) --------->AHL20(2)                  <---------ANAC58                                         ------- <---------AHL20(2)          <---------AHL20(2)        <---------TOE1(3)                 <---------AtLEC2 --------GT1 <---------ARR11(3)      <---------ANAC58  <---------TOE2(3)        <---------TOE1(3) ------->ANAC55(2)          --------->AHL20(2)  <---------At5g28300             <---------TOE2(3) ------AHL20(2) <---------AHL20(2)  ---------->ID1 --------->At5g28300      <----------DOF2<---------YAB1   tacttaattaatttagatttttttttcttataaaatttggcttcttaattcacagttaatgtttttttttaaaatttgatttaaggttttttcatgaatg  12693200                       <-----------HVH21                      <---------O2                      --------->O2  <---------MYB52(2)                      <---------bZIP60(1)                      --------->TGA1a                      =======================MYC_MYB                      <---------ANAC46                      --------->bZIP60(1)   <---------ARR14(2)                      <---------TGA1a       --------->ARR14(2)                      --------->bZIP60(2)   ------->TEIL                   --------->DEAR3(1)       --------->GLK1(2)                  --------->At4g35610 --------->MYB52(1)                  <---------At4g35610------->GAMYB                                                  -           <---------ARR14(2)     <---------DOF5.7(2)                                           <----           <---------GLK1(2)      --------->MYB52(1)                                         --------           <xxxxxxxxxxxxxxxxsmallRNA(s)    <---------GLK1(2)                                 --------     --------->HSFB2a(2)       <---------ANAC58                                              --------     <---------HSFB2a(2)       <---------ANAC58                                        <---------ARR11(3) >TEIL     --------->ARR14(2) --------->MYB59                                          --------->ARR11(3)   tccacatccagacgattctcagcgacgtcaattgggtaacgaactgaatctgaaacacaaacaaatcaaattttggtttcaaaacagaagaactcaagcc  12693300                                                                                                    <                                                                                                    -                                                                                                    -                                                                                                   --                                                                                                   <-                                                                                                 <---                                                                     <-----------GT1             <--- -------->At5g28300                                             ----------->GT1                  ---- -------RAV1(2)                                       --------->ATHB12    ------>MYB83 <-----------GT1 ->ANAC58                                           <---------WOX13(1)    ------>MYB46(1)       <---- ->ANAC46                 <---------AHL20(2)--------->YAB1<---------AHL20(2)    --------->YAB1  ----- ->ANAC58    ---------->ID1                <---------YAB1--------->AHL20(2)  --------->YAB1   -------   agggtaattgtttttgtcttatctatttttaatctagtttagtttataatacagattgatttaatcgagttaaaccaaataatagtgatttactagtcat  12693400  <---------YAB1 ---------ICU4 -------->ATHB12 -------->ATHB51 ------->ICU4                                 <---------ICU4             --------->ARR11(3) --------YAB1                             --------->ANAC46               <---------ARR11(3) ------ICU4                               --------->ANAC58               --------->ARR14(2) -----HAHB4                               --------->ANAC58               <---------ARR14(2) ----->YAB1                             --------->ANAC46 <---------AHL20(2) -----YAB1                    --------->TOE2(3)          --------->AHL20(2) ---->ICU4                   --------->YAB1  <---------ATHB51          ----------->ARR10 -->YAB1                     ----------->GT1 <---------YAB1     <---------AHL20(2)     <-----------GT1   cattattgttcaacatcgttgttgtataccatcgtaaattccacacgataattgcatatttaaaatttaaacgaagatttgtctaaatttcacctccaaa  12693500  Previous    Next  AGI:  At1g34650.1    Description:  HDG10 (HOMEODOMAIN GLABROUS10); DNA binding / transcription factor. similar to HDG9 (HOMEODOMAIN GLABROUS9), DNA binding / sequence-specific DNA binding / transcription factor [Arabidopsis thaliana] (TAIR:AT5G17320.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO22197.1); contains InterPro domain Homeodomain-related; (InterPro:IPR012287); contains InterPro domain Lipid-binding START (InterPro:IPR002913); contains InterPro domain Homeodomain-like (InterPro:IPR009057); contains InterPro domain Homeobox; (InterPro:IPR001356) Range:  from: 12692973    to: 12697812    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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