Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                             <---------At4g35610                           --------->ZAT2                           --------->At4g35610                      --------->PCF5                      --------->TCP16(1)                      <---------PCF2                     <-----------HVH21               <---------ZAT14                                                                      -               --------->ZAT14                                                                 <-----       --------->AHL20(2)  <---------ZAT2                           --------->AHL20(2)--------->LBD16 -------HSFB2a(2)    <---------TCP16(2)          <----------DOF2  <---------TOE2(3)  <---------ANAC46 ------>HSFB2a(2)   <---------MYB46(3)       <----------DOF2   <---------MYB52(1) --------->GLK1(2)--   ccagacccaaaaaatacttcagtggtcccagctctctcagtttgaagctttcttttaatgcctctgttaatgaaatagcaagagactccgtggtactagc  12642000                                                                                    --------->YAB1                                                                       ------>ZmHOX2a(2)                                                                      <---------GLK1(1)                                            --------->TOE2(3)         --------->At4g35610                                 --------->AHL20(2) --------->MYB46(3)--------->GLK1(1)                            --------->ZAT18 --------->TOE1(3)        --------->ARR11(3) -------->YAB1             ----------->GT1------->TEIL  --------->MYB46(3)  <-----------RAV1(1) ----STY1(2)      --------->ANAC46  --------->GLK1(2)------->GAMYB   <---------ARR11(3) --------->HVH21 <-------TEIL    <---------AHL20(2) <---------MYB52(2)<---------At4g35610   tatgacaatgtcatcaacatacaccaagagggcaataaaatctgaaccttgacaacgaacaaacaatgtgtgatctccctgttgtttcataaaaccaagt  12642100                              ----------->HVH21                              ----------->TGA1                          --------->MYB46(3)       ----------------->AGL2                    <---------ANAC46        <---------ANAC58                                       --   ---------->DOF2--------->ARR11(3)        <---------ANAC58           <---------ANAC58           <-- <---------At4g35610<---------ANAC58    <---------ANAC58               <---------ANAC58         <---- --------->At4g35610<---------ANAC58    <---------ANAC58          <----------DOF2       <------ZmHOX2a(1)   ttcagcaaagactcagaaaatttcttgaaccactgacgagatgcttgcttcagaccataaatagacttctttagcctgcaaacagcattaggaggtaagg  12642200                              <---------HSFC1(2)      --------->ANAC46                              --------->HSFC1(2)      --------->ANAC58--------->ANAC58                           <------ZmHOX2a(1)          --------->bZIP60(2)                          >> ------->ATERF1(1)   ------->GAMYB    --------->AHL20(2)   <---------YAB1              <---------ZAT2 -------GLK1(1)     --------->MYB46(3)<---------AHL20(2) <-----------GT1          --------->ARR11(3)- --ZmHOX2a(1) --------->At4g35610<-------TEIL         --------->ANAC58--------->ANAC58 <---------At4g35610   agtcccccttaatatcagcataaccatcaggaagtttcatataaatttcttcgtccaagtcaccattgagaaacgcattagaaatatcaagctgattcag  12642300                 ----------->ARR10                                   --------->GLK1(2)             --------->ZAT2 --------->YAB1                       --------->DAG2      --------->TOE2(3)             <---------At4g35610                      ----------->RAV1(1)  <---------ZAT14             --------->At4g35610    <---------WRKY18(1)         ---------->DOF2      --------->YAB1 >>>>>>>>>>>>>>>LFY--------->ARR11(3)   <---------ZAT14    <------ZmHOX2a(1)      <-----------GT1 --- -------->MYB46(3) <---------ARR11(3)   --------->ZAT14 <-----------RAV1(2)--------->ZAT14      *TSS   aaaccactgtttagaagctgagaccttcaacaataacttgactgtagccatcttagccacaggagaaaaagtttctgtatagtctaaccatattacaaag  12642400                                                                                  <---------ZAT14                                           <---------ANAC55(2)                    <xxxxxxxxxxxxxxxxxx                                           <---------ANAC46                       --------->ZAT14                                           --------->ANAC58              <---------ICU4                                           <---------HSFB2a(2)           <--------ATHB1                                           --------->ANAC55(2)           --------->ATHB51                                           --------->ANAC58             --------->ICU4                                          <---------LBD16               <---------YAB1<xxxxxxxxxxxxxx                                      <---------MYB46(3)--------->ARR11(3)      --------------->AtSPL8                                      --------->MYB52(2)<---------ARR11(3)  <-----------GT1                                   ------------>MYB.PH3(2) <---------YAB1--------->YAB1                           <------ZmHOX2a(2)          --------->HSFC1(2)--------->AHL20(2)         ------>ZmHOX2a(2)--------->ARR14(2)          <---------HSFC1(2)<---------ATHB51      ============================HOX2a_HOX2a         <---------HSFB2a(1)<--------HAHB4      <------ZmHOX2a(1)   <---------ARR14(2)          --------->HSFB2a(1)-------->HAHB4<xxxxxxxxxxxxx  ---------->DOF2         --------->ARR11(3)        ---------->DOF2--------->TOE2(3)------------>CBF ------>CCA1(2)           <---------ARR11(3)  ---------->DOF2   --------->YAB1  --------->ANAC46<----   atagaaaaggatcgatgaagaagatgaagatcgagagagtttgttacggaaagagaaagttctcattcatcttaataattacactgtacaattactctgt  12642500                   <------ZmHOX2a(2)                   --------->CCA1(2)                   xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)                  <-----------ARR10               <---------AHL20(2)                  --------->ARR11(3)          <---------AHL20(2)                  <---------ARR11(3)          --------->AHL20(2)           xxxxxxxxxxxxxxxxxxxx>smallRNA(se3) <---------YAB1          <---------ANAC46                   --------->AHL20(1)       --------->ALFIN1  <xxxxxxxxxxxxxxxxxxxxsmallRNA(si3) xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(s2)        <---------AHL20(1)                            <--------- xxsmallRNA(se3)  <---------AGP1             --------->AHL20(2)  xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3) xxxxxxsmallRNA(si3)    --------->MYB46(3)  --------->YAB1 --------->DEAR3(2)         <---------At4g35610 xxxxxxsmallRNA(si3)------>ZmHOX2a(2) ------>MYB83--------->AHL20(2)  ------->TEIL <-----------HVH21x -----MYB52(1)    --------->AGP1      ------>MYB46(1) --------->TOE2(3)           <-----------RAV1(1)   tatatacaagtgtggtataagatctaaccaatactaaaccgaacaaatataattaatctaaaccggcctatgtactccaatatgctgtcgctgctttcag  12642600                   --------->HSFB2a(1)                  ------->TEIL               <---------MYB52(2)                                          --------->ATHB12             --------->MYB52(1)    --------->YAB1                       <---------At4g35610         <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)                   <---------MYB52(1)         --------->ANAC58          <---------ICU4               --------->At5g28300         --------->AtLEC2         <---------ATHB12             ----------->GT1    ----------->HVH21         <---------AHL20(2)           <-----------GT1<---------YAB1 -DOF2   --------->ANAC58     --------->AHL20(2)     <---------YAB1 --------->ICU4          >>>>>>>>> xxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)   <---------YAB1--------->ATHB12 <---------YAB1<---------YAB1   tcaccagtgacaggcaaacgaacattgcatttttaaatcataacaattggagacgatgatttaaccggtaattctgatgatttagtgactatagctccat  12642700                       <---------DAG2                       <----------DOF2                 ----------->HVH21                 ----------->TGA1               <---------ICU4            <---------ICU4                <-----------GT1           <---------YAB1                 --------->MYB52(1)  <-----------GT1             --------->ICU4           --------->ICU4         --------->ICU4     <-----------GT1        ----------->HVH21 >>>>>>>>LFY--------->ATHB51    <---------ICU4    ----------->GT1  <----------DOF2        <---------YAB1   tgtaagaaatgacataattgtgacgcttttttagtcattactagtaacgaattagtaactatattttcgctttcaaatgtgacagaaatgtgatgtttga  12642800                                                                                     --------->ATHB12                                                                                     -------->HAHB4                                                                                     <--------ATHB1                                                                                    <---------YAB1                                                                                    --------->ICU4                                                                                    <---------ATHB12                                                          <-----------GT1         --------->YAB1                                                          --------->MYB52(1)   --------->YAB1                                                       --------->ANAC55(2) --------->ZAT6                                                       <---------ANAC55(2)<---------YAB1                                                  --------->ATHB12      --------->YAB1                       <---------TOE2(3)         <---------YAB1         <---------ICU4                      <-----------GT1       XXXXXXXXXXXXXXXXXXXX>MIR418<---------ATHB12      --------             <---------YAB1  <---------AHL20(2)  --------->ICU4     <---------AHL20(2)      <--------   tagtcacaaaatatgacgattttttgacgatttttttagtcgataaatgtgatgattaagtaacgattttttaatcatcactagtaatgattcaataact  12642900  Previous    Next  AGI:  At1g34545.1    Description:  transposable element gene. copia-like retrotransposon family, has a 3.0e-112 P-value blast match to GB:CAA72990 open reading frame 2 (Ty1_Copia-element) (Brassica oleracea) Range:  from: 12641059    to: 12642396    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
	printer-friendly version