Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                    --------->LBD16                                                 --------->RAP2.6(2)                                                 --------->RAP2.3(2)   <---------ARR11(3)                          ------>MYB46(1)   --------->ARR11(3)                          --------->At4g35610  --------->CCA1(1)             <---------At4g35610              --------->TOE1(3)  --------->RVE1(1)             --------->At4g35610        --------->TOE2(3) -------AHL20(2)     <---------ARR11(3)        ------>MYB83--------->TOE1(3)                <<<<<<<<<TBF1 ------>AHL20(2)     --------->ARR11(3)        --------->ZAT2    --------->TOE2(3)<---------GLK1(2) --->GT1       <---------HSFB2a(2)            --------->ANAC46  --------->ZAT6<----------DOF2   ataaatatctatatatactcgaagacctagtttgagcttcgctcaaaccagccgcatcaaaccctaaccctaatattcttctttgattctcttcttcttc  12627500                       <---------GLK1(1)                       --------->GLK1(1)                       <------ZmHOX2a(2)                      <---------AGP1                      --------->ARR14(2)                      <---------ARR14(2)                                                     <------NtERF2                      <-----------ARR10                                                     ------>NtERF2                      <---------ARR11(3)                                                    ---------                      <---------ARR11(1)                                                    <--------                  <---------LBD16                                                          --------->RAP2.3(3)                  --------->ATERF1(1)                                                      --------->ANAC46                  <------NtERF2                                                            --------->RAP2.3(2)                 ------>NtERF2                                                             --------->RAP2.6(2)                 <---------ATERF1(1)                                                       --------->DEAR3(1)                <---------DEAR3(1)                                                         <---------ATERF1(2)                --------->DEAR3(1)                  --------->DEAR3(1)                    --------->ATERF1(1)              <-----------HVH21                  <---------ALFIN1                         --------->DEAR4(2)             --------->MYB52(2)                <-----------HVH21                          --------->ORA47(2)      <---------MYB52(1)------>ZmHOX2a(2)      <-----------TGA1                           --------->ERF1   ------>ZmHOX2a(2) <---------ARR14(1)------>ZmHOX2a(2)                                  --------->RAP2.3(1)  <------ZmHOX2a(2)  <---------CCA1(2)<------ZmHOX2a(2)         <<<<<<<<<TBF1            <---------ATERF1(1) --------->ARR14(2) --------->LBD16  --------->ARR14(2) <---------CCA1(2)               --------->DEAR3(1) <---------ARR14(2)<---------TOE1(2) <---------ARR14(2)------->TEIL                  <---------ICU4   tccgatctgttttgttcgtcgccggatctcttcttctccgatctgataccgtcaccgcatctcttcttcttctctaatctgttatactcatcgccgcctc  12627600                                      --------->ABI4(1)                                      <---------ATERF1(1)                                    --------->DEAR4(2)                           <----------DOF2                           <---------DAG2                         ------>NtERF2------>NtERF2                        --------->RAP2.6(2)                        --------->RAP2.3(3)                        --------->DEAR3(1)                        --------->RAP2.3(2)                       --------->RAP2.3(1)                       <------NtERF2--------->ERF1                       --------->ERF1--------->DEAR3(1)                       --------->DEAR4(2)                       --------->ORA47(2)                       --------->ATERF1(1)                      ------>NtERF2 --------->ORA47(2)                      <---------ATERF1(1)                      <---------RAP2.3(1)                                     <---------CCA1(2)                     <---------DEAR3(1)                                     <---------O2                     --------->DEAR3(1)                                     --------->TGA1a                   <-----------HVH21--------->ATERF1(1)                     --------->bZIP60(2)                  --------->ANAC55(2)--------->RAP2.3(2)                    --------->O2                  <---------bZIP60(1)--------->RAP2.6(2)                ------>NtERF2                  <---------bZIP60(2)<---------ATERF1(2)                --------->ABI4(1)                  <---------ANAC58  --------->RAP2.3(1)                --------->DEAR3(1)                  --------->bZIP60(1)--------->ANAC46                  --------->ANAC46                  <---------ANAC55(2)--------->RAP2.3(3)            <---------ALFIN1                  --------->ANAC46 <---------RAP2.3(1)             --------->MYB46(3)                  <---------ANAC58 <---------ATERF1(1)   ------>ZmHOX2a(2) <------NtERF2   <<<<<<<<<TBF1<---------TGA2(2) --------->ANAC46      <------ZmHOX2a(2)  ------>NtERF2 >ABI4(1)   <---------YAB1<------NtERF2<------NtERF2   <---------ARR14(2)  --------->LBD16----------- -ATERF1(1)------>ZmHOX2a(2)<----------DOF2            --------->ARR14(2) --------->DEAR3(1)   tcttcttcttcgatctgattacgtcgccgcctttcttcgccgcctctcttcttctccgatctgtattcaaacaccgccgcgtctcttcttctctgactcg  12627700                                                                                                    <                                                                                                  ---                                                                                                 <---                                                                                                -----                                                                                                <----                         <---------At4g35610                                                    -----                  <---------DOF5.7(2)                                                           <----             <---------TOE2(3)                                                               <-------             <---------TOE1(3)                                                               --------        --------------->AGL15                                                             <----------        <---------------AGL15                                                 ------>ZmHOX2a(2) <----       ----------------->AG              --------->ARR11(3)        <<<<<<<<<TBF1      <----------DOF2       ==============================================================================================       <-----------------AG<----------DOF2           <-----------ARR10      --------->ARR14(2)  <----       <-----------------AGL1            <---------ARR11(3)     <<<<<<<<<TBF1<------ZmHOX2a(2)  ----- >HVH21----------------->AGL1      <----------DOF2  <---------CCA1(2)       <---------ARR14(2) <-----   aactgttttgcctctaagggtaacgtctgcttctccgatttaagttcttctctcaaatctaacttcttcttcttctccgatcttacttcttttttccaga  12627800    <----------DOF2   --------------->AGL15   <---------DAG2   =======================================================================================MADS_MADS -----------GT1 --->ZmHOX2a(2)                                                                              -------- ---ZmHOX2a(2)                                                                             <---------ANAC58 ---->ARR11(3)                                                                             <---------ANAC46 -----ARR14(2)                                                                             <---------ANAC58 ---->ARR14(2)                                                                         --------->ZAT2 -----ARR11(3)                                         <------NtERF2                   --------->At4g35610 --HSFB2a(2)                                          <---------RAP2.6(3)              <---------At4g35610 ->HSFB2a(2)                                          ------>NtERF2                  --------->MYB46(3) -GT1                     <----------DOF2             <-----------HVH21             --------->At4g35610 -------ARR10   <---------TOE2(3)                     <---------SPL7               ----------->RAV1(1) ==================MADS_MADS                         <---------ANAC58   <-----------------AGL1 -----AGP1      <---------TOE1(3)                    *TSS       <---------ICU4  --------->ANAC46    < ---->AGP1     <---------At5g28300                   <---------ANAC46   <-----------------AG<-------- ----CCA1(2)  <-----------GT1                        <---------ANAC58  <-----------GT1------->GAMYB<-   tctaaccttttgtagtttacggttctaactttgggtttgttttttgtgcaagatgccgtcggataatacttatatacggtttaggcaacagcagcgtgac  12627900                                                                                            <xxxxxxxx                                                                                            <xxxxxxxx                                                                                         --------->AtMYB61                                                                                        --------->MYB46(3)                                                                                        <---------ATHB12                                                                                        <---------MYB55(2)                                                                                   ------->GAMYB                                                                      --------->AtMYB61------>MYB46(1)                                                            --------->ANAC58      --------->ANAC46                                               <---------TOE1(3)  <---------MYB55(2)   -------->P   <---------AtLEC2                            <---------TOE2(3)  --------->MYB46(3) --------->DEAR3(1)   <---------ANAC58              <-----------ARR10          --------->ANAC46      --------->ANAC58   <---------ANAC58              --------->ARR11(3)         --------->ANAC58      <xxxxxxxxxxxxxxxxxx   <---------ANAC46              <---------ARR11(3)  <---------TOE1(3)<---------ALFIN1------>NtERF2 --->HVH21                     ---------->TaMYB80  <-------TEIL--------->DEAR3(1) --------->ANAC58 ---------MYB52(1)        <---------ANAC46  <-------TEIL <-------TEIL--------->MYB46(3)------>MYB83 ---HVH21          <---------MYB52(1)<---------LBD16<-----------RAV1(2)      ------>NtERF2 --------->ANAC46 ----------HVH21 ------>ZmHOX2a(1)   <-----------RAV1(2)<-----------HVH21    xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)   ccgttgcatgtcaattctcctgttagtgctgggaatatctcaggggttcaaggttcaggttcacgccatccaccatcgcctccaacgccaaccactcagc  12628000              <---------At4g35610             <---------YAB1        <---------ICU4                                                            <---------ANAC58        --------->YAB1                                                            <---------ANAC58        -------->ATHB1                                                          ------>NtERF2       <---------ATHB12                                                      <---------ZAT2     --------->WOX13(1)                                --------->At4g35610   --------->ZAT2  <-----------HVH21    --------->At4g35610   --------->ZAT6               <---------ANAC58 xxxxxxxxsmallRNA(i)   <---------At4g35610----------->HVH21             <-----------HVH21 xxxxxxxxsmallRNA(s)   <---------ZAT2  --------->GLK1(2)             <---------LBD16----------->HVH21 xxxxxsmallRNA(fl3)    --------->ZAT2--------->MYB46(3)<---------At4g35610<---------ANAC58          -   cttctgtcaatcattctgatgctcaagctgagcgtctcaacaatctgacactggatgagctccttgatagtcccggtcgtgctggcttgacaagactaga  12628100                                                                                --------->ARR14(2)                                                                                <---------ARR14(2)                                                                              <------MYB46(1)                                                                              <---------MYB46(3)                                                                              <------MYB83                                                                              <---------DEAR3(2)                                                                             <---------AtMYB61                                     --------->YAB1        ----------->GT1   --------->MYB59                            ----------->GT1    --------->REM1(2)            <--------P                           <---------TOE1(3)<---------ANAC58              <------MYB83--------->TOE2(3)                           <---------TOE2(3)<---------ANAC46              <------MYB46(1)                           --------->DAG2   <---------ANAC58             --------->MYB59 --------->DOF2          <--------P <-------TEIL    --------->ZAT14      <---------TOE2(3)   cccaaagcgacctctggcaactctctggtaaggttaaattcatagttcgtgtagaacagtcttgtaaaatggaattaggttggttctgccttagaagttt  12628200                <---------ANAC58                                              <---------MYB46(3)                <---------ANAC58                                              <------MYB46(1)                <-------GAMYB                                            --------->ZAT18                <---------ANAC46                                      --------->ALFIN1               <---------MYB46(3)                                     <-----------RAV1(1)               <------MYB83                                         <---------ANAC46               <------MYB46(1)                                 ------>ZmHOX2a(2)           --------->ZAT2                                     <------ZmHOX2a(2)  --------->ANAC58                                           --------->ARR14(2)                     <  --------->ANAC58                                           --------->ARR11(3)                   ---  <---------ANAC55(2)                                        <---------ARR11(3) <--------P    <------MYB46(1)  --------->ANAC46                    <---------ANAC46       <---------ARR14(2)<-------GAMYB <-------  --------->ANAC55(1)          <---------ZAT14              --------->GLK1(1) <------MYB83  <--------P  ----------->GT1<---------------AtSPL8                     <---------GLK1(1)<---------AtMYB61<------MYB83  --------->ANAC55(2)          --------->ZAT14   ---------->DOF2 ------>ZmHOX2a(1)        <---------REM1(1)   aaacacgtaaaacagcttggttgtacttagcattgtagtgtcttagaagtttaaagacatagagatccttatgtgtgggctggttgctcttgttgtaggt  12628300                                     <---------ARR14(2)                                     --------->ARR14(2)                                 <---------At4g35610                                ----------->RAV1(1)                              <---------At4g35610                              --------->At4g35610                         ------->GAMYB                          --------->ANAC58                        --------->MYB46(3)                      --------->ANAC58                      ----------->RAV1(1)                 ------->TEIL           <---------ZAT14    <------NtERF2              <---------GLK1(2)            <xxxxxxxxxxxxxx ---------TOE2(3)   <---------At4g35610              ---------->DOF2                 ---------->DOF2 -------->HVH21     --------->At4g35610   ---------->DOF2--------->ARR14(2) <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3) --TOE1(2) --------->ZAT14    --------->LBD16    --------->GLK1(1)       <-----------HVH21  <xxxxxxxx   ttgacgatgactctacagttgcagcaacagtccgcagcatatttgaaagagatttcaaagaacctcatgccaattggtcacagacatcaaaggctacaat  12628400  Previous    Next  AGI:  At1g34530.1    Description:  transposable element gene. CACTA-like transposase family (Ptta/En/Spm), has a 7.8e-116 P-value blast match to At5g36655.1/81-333 CACTA-like transposase family (Ptta/En/Spm) (CACTA-element) (Arabidopsis thaliana) Range:  from: 12627853    to: 12629986    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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