Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100            <---------ANAC55(1)          <---------ANAC58                                             <---------TOE2(3)          <---------ANAC58                                          <---------WOX13(1)          <---------ANAC46               <---------ANAC58        <---------AHL20(2)     <---------ICU4                      <---------ANAC58        --------->AHL20(2)                 <   --------->TOE2(3)                     <---------ANAC46        --------->AHL20(1)                -- -----------GT1              ------->GAMYB                      --------->AHL20(2)                <-- -----AHL20(2)              --------->MYB46(3)               --------->ICU4                      ---- ---->AHL20(2)             ------>MYB83 --------->MYB59    --------->YAB1                  <--------- ---->AHL20(1)             ------>MYB46(1)                --------->AHL20(2)         --------->AHL20(2) -----AHL20(1)             -------->P  xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)         <---------AHL20(2) --->AHL20(2)     <<<<<<<<<<GT-3b  <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)             <---------AHL20(1)   aattacattatttcgtgtatttttcttccaaccaaaaacaattgggtatgaaacgtctaaataaaaattaattgatgttttttataaaaaatttcaccat  12603900                               --------->YAB1                               <--------HAHB4                                                --------                            --------->YAB1                                                  <--------    <---------At5g28300  <---------ICU4                               --------->LBD16    <---------AHL20(2)   <-----------GT1   <---------AHL20(2)                             <---------LBD16      --------->AHL20(2) ---------ICU4--------->ARR14(2)    <-----------GT1            --------->ZAT6      --------->YAB1 ------->ICU4 <---------ARR11(3)   ---------->DOF2        <---------At4g35610      <-----------GT1 -------AHL20(1)    --------->AHL20(2)  ----------->GT1   --------->At4g35610 --------->AHL20(2) ----->YAB1   <---------ARR11(1)--------->TOE2(3)         --------->LBD16     <---------AHL20(2) ---- --GT1       <---------CCA1(2)<---------YAB1 <-----------GT1   <---------ALFIN1<---------AHL20(2)<---   aatatttaccataccatatctatttaatatttatcattaaaccggttatactatatgttccgctaacacttccgcacaaattaaataacaatttatgaaa  12604000                                                                <---------AHL20(2)                                   <---------AHL20(2)       --------->AHL20(2)           <-----------GT1                                   <-----------GT1          <---------AHL20(2)         --------->YAB1                                <---------ICU4             --------->AHL20(2)        <---------YAB1                             --------->ANAC58              <---------AHL20(2)        <---------AHL20(2)                             --------->ANAC55(2)           --------->AHL20(1)        --------->AHL20(2) ->YAB1                      <---------ANAC55(2)       --------->AHL20(2)           --------->TOE2(3) -YAB1   <---------ATHB12    ----------->GT1           <---------AHL20(2)    --------->YAB1 ----->ARR14(2)              --------->ANAC58       <----------DOF2<---------YAB1 --------->ICU4 ------ARR14(2)      <----------DOF2      --------->AtLEC2 <---------AHL20(1)----------->GT1<--------   atttgcatccaatcggttttgaactttagactcgtaattacttcatacaaaactcttttaatttattttcttattgcaatagtaaatattaatactgttc  12604100                                                      --------->AHL20(2)                                                      <---------AHL20(2)                                                      --------->ATHB51                                                      <---------ICU4                                                     --------->ICU4                                                  <---------YAB1                                            <---------ICU4                                            <---------AHL20(1)                      <---------YAB1        --------->AHL20(1)                     <---------AHL20(1)     --------->ARR11(3)                                      -     --------->ANAC55(2)    <-----------RAV1(1)<-----------GT1                                      <   <-----------GT1   <---------AHL20(2)     <---------ARR11(3)    ----------->GT1             ------- -ZAT6             <---------YAB1      --------->AHL20(2)       --------->ICU4  <---------ARR14(2)  -   attttttacataacatgaactattatttttgtgttgctatttttaatattttctaattatttcgcaattagtaaaaatcgagaatacttgcatcgtttta  12604200                                                                                                  ---                                                                                                  <--               <---------ARR11(3)                                                            <-------      --------------->AGL15                                        <------------CBF          <-------     ================================================================================================     ----------------->AGL2                                      --------->AHL20(1)         <--------     --------->At4g35610                                         --------->AHL20(2)        ----------     ----------------->AGL3                             --------->ANAC58           --------->ARR11(3) <-----------HVH21<---------AHL20(2)                    --------->ANAC58      *TSS<---------GLK1(1) -------->bZIP60(1)         ------------>CBF            ----------->GT1<---------ANAC58    ---------- ---------bZIP60(1)    <---------AHL20(2)      --------->WOX13(1)<---------AHL20(2)<---------ARR11(3) -->AHL20(2)   --------->ARR11(3)            ------------>CBF   --------->AHL20(2)--------->GLK1(1) -------->TGA2(1) --------->AHL20(2) <---------TOE2(3)--------->CCA1(2)<---------ANAC58  <-----------GT1   ttatgtcaccagaaatagattttattttaaaacaatttagaggttgcatcaattagataggcaaaaaaaaattgagtgctagagaaatcttttacctttt  12604300                                                                                    --------->TOE2(1)                                                                                ------->TEIL                                                                             <------ZmHOX2a(2) -------->GT1                                                               <---------ARR14(2) -------ANAC46                                                              --------->AGP1 ---DOF2                                                               <---------ARR14(2) --DAG2    --------->HSFC1(2)                                          --------->ARR14(2) ========MADS_MADS   --------->ZAT6                                   <---------CCA1(2) -DAG2  <---------At4g35610            <-----------HVH21          <----------DOF2   --------->TOE1(1) ------->AG<---------HSFC1(2)         ------>ZmHOX2a(1)         ---------->ID1  -------->P ------->AGL1        <---------ICU4 ----------->RAV1(2) --------->ANAC46    --------->ARR14(2)   tcgtaaatttagatgcttcttcatcactacaatttctctcctgtcactctcttcttctacgctcttgtctttatatccgatctacctcgttccctctcaa  12604400                                                    --------->DAG2                                                   ---------->DOF2                                              ------>ZmHOX2a(2)                                             <------ZmHOX2a(2)                                            <---------ARR14(2)                                            --------->ARR14(2)                                            <---------AGP1                                            --------->AGP1                                            <---------ARR11(3)                                            <---------ARR14(3)                                            --------->ARR14(3)                     ================================HOX2a_HOX2a                     ------>ZmHOX2a(1)      --------->ARR11(3)                     ===============================HOX2a_HOX2a                         --------->ANAC58                 <---------ARR11(3)       ----------->ARR10                             --------->ANAC58                <---------CCA1(2)      --------->TOE1(2)     ---------->ID1  ------->GAMYB   --------              ------>ZmHOX2a(1)<----------ID1--------->CCA1(2) <----------DOF2 ----------->RAV1(2)   atccctaaatcgtctcctatatcctttcgcaaatggacaaacccaagatctgaaaaagtttttgtcttttctctcccaatcgcctgattcaagcctaaag  12604500                                                                                      <---------TOE2(3)                                                                               <---------ANAC58                                                                   <-------GAMYB    ---------->DOF2                                                              --------->ALFIN1 <---------ANAC58                                                            <---------ANAC58   <---------ANAC46                                                            <---------ANAC46   <---------ANAC55(2)                                           ---------->DOF2  <---------ANAC58   ----------->GT1                              <---------ANAC55(1)   <---------ANAC58          <-------TEIL      <----  <---------MYB52(1)          <---------ANAC46      <---------ANAC46          <---------------------- -->DOF2     --------->HSFB2a(2)     ----------->GT1<---------ANAC58       --------->CCA1(2)<--------   ctcggtttttttcttctgggtatttaggggttaagtgtattgtagaaaagcatggcgagtttgagtgggagttggagagatgcgtataaaggaatgtcat  12604600                                                                                        --------->ALFIN1                                                                                      --------->ZAT2                                                                                      <---------ZAT2       ---------->DOF2                                                                <---------At4g35610 -----At4g35610             <---------ARR11(3)           <-------TEIL      <---------ARR11(3)<------- -TaNAC69(2)             <----------DOF2                 <---------YAB1    --------->ARR11(3)<------- ---HVH21                <---------DAG2    --------->ATHB12            ---------->DOF2--------->At4g35610   cggataatataaagggtttagtattggctttatcttcaagcttattcattggtgctagtttcattgttaagaagaaaggtctcaagagagctggtgcttc  12604700                                                                                <---------AHL20(2)                                                                               <---------AHL20(1)                                            <---------ARR14(2)       --------->ATHB12                           --------->ZAT14  --------->ARR14(2)      --------->ICU4      -------------        <-----------RAV1(2)<---------ZAT14----------->ARR10    --------->AtLEC2--------->AHL20(2) --ANAC58       <-----------GT1 --------->ATHB12     --------->MYB52(2)        --------->AHL20(1) --ANAC58 ----------->GT1 <----------DOF2<------ZmHOX2a(1)<-----------GT1      <---------AHL20(2) <--   tggtctcagagcaggttatttccattctctttactgatttggaggagatttgtgtttgtttcactatgcaaagattggaaatttattctgccagttttag  12604800  Previous    Next  AGI:  At1g34470.1    Description:  permease-related. similar to unknown protein [Arabidopsis thaliana] (TAIR:AT4G09640.1); similar to hypothetical protein [Vitis vinifera] (GB:CAN81783.1); contains InterPro domain Protein of unknown function DUF803 (InterPro:IPR008521) Range:  from: 12604278    to: 12607011    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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