Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                             --------->ARR11(3)                                                           <---------ARR11(3)                                                          <---------GLK1(1)                                                          xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)                                                          --------->GLK1(1)                                                        xxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)                                                        xxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)                                                        ----------->GT1                                                xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(i2)                                                xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)                                                xxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)                                              <xxxxxxxxxxxxxxxxsmallRNA(s)                                           <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)                                          <xxxxxxxxxxxxxxxxsmallRNA(s)                                         xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)                                         xxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)                                         xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)                                         <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)                                        xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)                                        xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)                                       <xxxxxxxxxxxxxxxxsmallRNA(s)                                       <xxxxxxxxxxxxxxxxsmallRNA(i)                                      <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)                                     <xxxxxxxxxxxxxxxxsmallRNA(s)                                     <xxxxxxxxxxxxxxxxsmallRNA(i)                                   <xxxxxxxxxxxxxxxxxxxxsmallRNA(s2)                                   <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(i2)                                   <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(l2)                                  ------>MYB46(1)       xxxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)                                  ------>MYB83xxxxxxxxxxxxxxxx>smallRNA(i)                                  <xxxxxxxxxxxxxxxxxxxxsmallRNA(i2)                                 <xxxxxxxxxxxxxxxxxxxxsmallRNA(s2)                                 <xxxxxxxxxxxxxxxxxxxxsmallRNA(i2)                                xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)                                --------->AtMYB61      <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(i2)                               <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)                               <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)                               <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(l2)                               <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(i2)                       <----------DOF2<xxxxxxxxxxxxxxxxsmallRNA(s)                       <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)<---------ARR14(2)                       <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)--------->ARR14(2)               <---------AHL20(2)<xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)             <---------AHL20(2)              <---------AHL20(2)xxxxxxxxxxxxxxxx>smallRNA(i)          <---------AHL20(2)        -----        <---------AHL20(2)   <-----------GT1 xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3) --------->AHL20(2)    <----------DOF2 <-----------GT1<xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)        --------->AHL20(2)    <---------DAG2 <-----------GT1<xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3) <-----------GT1 ----------->GT1   taagtactttttattttttatttatctttttagaccatccccatcggacaaatttagagggtatcttcaaattttaacagaataaaaaaatagaaaaatg  12594700                                                                                                  <--                                                                                                 <---                                                                                                 ----                                                                                                 ----                                                                                                 ----                                                                                                 <---                                                                                                 ----                                                                                                 <---                                                                                                <----                                                       <---------AHL20(2)                       <----                                <----------DOF2    <---------RVE1(1)                           <-----                               <---------ANAC46    <---------CCA1(1)                           <-----                               <---------ANAC58   <---------ARR11(3)                 <---------ICU4                               <---------ANAC58   --------->ARR11(3)            xxxxxxxxxxxxxxxxxxxxx                        xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)               <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)                   xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)                    <---------ARR14(2)<------                 <------ZmHOX2a(1)                <---------ARR14(2)        --------->ARR14(2)-------      <---------ZAT18--------->CCA1(2)   <-----------RAV1(1)             --------->ANAC58     -------   ---------->DOF2 xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)        <---------HSFB2a(2)  <xxxxxxxxxxxxxxx  <---------AHL20(2)xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)       --------->HSFB2a(2) --------->ICU4<-- ---->YAB1<----------DOF2     <------NtERF2     ----------->ARR10        --------->ANAC58  <---------   agaattaatgcgcttaacaggagagacaaggtggctttgatgtctgtgggaagatattttttgatactggaagacacgaatatgtcatcatgttattggt  12594800    <------------CBF ----MYB83 ------DEAR3(1) ----->MYB111(2) ----->MYB46(2) ----->MYB111(1)                                                                                  <-- ------AtMYB61                                                                              --------- ----->MYB55(2)                                                                             --------- ------MYB46(3)                                                                             <-------- ----P                                                                                      <-------- -----MYB55(1)                                      xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)  <---------ATHB12 ----ANAC58                                   <-----------GT1                              --------->AHL20(2) ----ANAC58                               <---------AHL20(2)                             xxxxxxxxxxxx xx>smallRNA(i2)                          --------->AHL20(1)                    --------->ATHB12----- ---MYB46(3)             <---------AHL20(2)<---------AHL20(2)                <-----------------AGL1 -->MYB55(2)     <---------AHL20(2)----------->RAV1(1)                      <xxxxxxxxxxxxxxxxsmallRNA(le3) -->ATHB12  <---------AHL20(2)     xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3) <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3) xxxxxxxxsmallRNA(fl3) <----------DOF2    <---------AHL20(1)  ----------->RAV1(1)      ------------>CBF ----MYB46(1)<---------AHL20(2)   xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)xxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3) ---CBF <------------------------ANAC81   --------->AHL20(2)  <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)   tggtgctattgttttttatttttttcttttatttggccaacaaatttatttctcttcattttgccaacaaatttctctctcttcatttggccaataaatt  12594900         --------->AtLEC2 -------YAB1                                                                                <-------- >AHL20(1)                                                                                 --------->ATHB51 >AHL20(2)                                                                                 --------->ATHB12 -AHL20(1)                                            <-----------GT1                     <---------YAB1 -AHL20(2)                                    <---------ANAC58                  <xxxxxxxxxxxxxxxxxxxx xxxxxxxxxxx>smallRNA(si3)    <-----------GT1 <---------ANAC58                <------ZmHOX2a(1) ---->YAB1                   --------->KAN4(2)<---------ANAC46              <---------TOE1(2)   -----   atagttaagacatgtaaatgctcttagggtttattccttcttgtaattccttgtttaaacacttcttgtagtagttcttaggaacacagtttattattga  12595000                                                                                 ------------>CBF                                                                                <<<<<<<<<<<<<<<<<LFY                                                                                ----------->RAV1(1)                                                                                ------>MYB83                                                                                ------>MYB46(1)                                                                              <---------MYB59                                                                              --------->MYB46(3)                                                                             --------->ANAC58                                                   ----------->GT1           --------->ANAC58                                                   xxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)                                                  xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)                                                 --------->DAG2              --------->ANAC46   --------->MYB52(1)                          ---------->DOF2             <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3) ----CBF                                   --------->TOE2(3)       --------->MYB52(1) xsmallRNA(se3)                    <-----------GT1----------->GT1--------->At5g28300  <xxxxxxxxxxxxxx ------>GT1                       --------->AHL20(2)--------->At5g28300    --------->GLK1(1)    -----   gtaaaaaacagagttttttttttgtctcaagtgaaatttactaaaccacaaaagggtaaataagcagggtaacagtgatacccaacaatggcccattaca  12595100                                                                             ------->MYC3                                                               <-----------GT1   <---------YAB1                                                          ------>MYB83       <-------MYC3    ------->GAMYB                                                          ------>MYB46(1)    ------->MYC2<---------WRKY38(1)                                                     <---------WRKY18(1)     <-------MYC2<---------WRKY12                                                    --------->WRKY38(1)   <---------ALFIN1-----------            ---------->DOF2                         --------->WRKY12     xxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3) xxxxxxxxxsmallRNA(si3)                          --------->ALFIN1    ------->GAMYB<---------At4g35610 ---->TOE2(3)                           ---------->DOF2 <---------MYB59 ----------->RAV1(1)--------->At4g35610   ttaacatctatggcaaaagactgtttgatattggactctatctaaagacaagtgttgacctaatattacaacagcaacacgttctgatgagtcaacagaa  12595200                                                                             <---------ANAC58                                        <---------MYB52(1)              <---------HSFC1(2)                                       --------->LBD16                  --------->HSFB2a(1)                                     <---------LBD16                    <---------HSFB2a(1)                                   --------->GLK1(2)                    --------->HSFC1(2)                                   --------->ARR14(2)               --------->ANAC46            <----                                --------->DEAR3(1)                  --------->ANAC58           <-----                 ------>NtERF2 --------->ANAC58                     --------->ANAC58           <-----        <---------At4g35610    --------->ANAC58                    <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)        --------->At4g35610 <---------ABI4(2)                      <---------TOE1(2)           ------      --------->bZIP60(1)  --------->ANAC58                 <---------HSFB2a(1)        xxxxxxxxxxxxxx      <---------bZIP60(1)  --------->ANAC58                 --------->HSFB2a(1)        <xxxxxxxxxxxxx    <---------DDF1     --------->HSFB2a(2)                  --------->HSFC1(2)       --------->MYB46(3)  --------->DEAR3(2)   <---------HSFB2a(2) ----------->GT1  <---------HSFC1(2)     <-----------GT1 >RAV1(1)     --------->At4g35610  <---------ARR14(2)      <-----------ARR10 <---------ANAC58  ------   gtttaccgacatcagcctctgccatcgagaagcaccgaatccggtgagtaaaacatcgtcgaaacttcgcacgaaatttccttgtttaccaccgaaatat  12595300                                                                   <----------DOF2                                                                   ------>ZmHOX2a(1)               <-        --------->At4g35610                            --------->KAN4(2)                           <-        --------->GLK1(1)                              <---------ARR14(2)                       <----  --------->MYB52(1)                                  --------->HSFB2a(1)                       ----- -----CCA1(2)                                         --------->KAN4(1)                       <------ ----ARR11(3)                                         <---------HSFB2a(1)                     ------- ----AHL20(1)                          <---------YAB1 <---------KAN4(1)                     <-------- --->ARR11(3)                        --------->YAB1  --------->ARR14(2)                 <----------DOF2 xxxxxxxxx>smallRNA(si3)             <---------ICU4  <---------KAN4(2)                 <---------ANAC46 xxxxxxxxxsmallRNA(fl3) ----------->RAV1(1)      --------->YAB1   --------->TOE2(3)    <---------ANAC58 --->AHL20(1) ---------->DOF2      --------->GLK1(2)<---------GLK1(2)                  <---------ANAC58   atctgaacggagctctaaaagagacacaacatgagagaatcatcatatgcatcagaatattctgcaatcctttaaaccaagatgaaattgcttgaatgat  12595400 --------->AtLEC2                                                                           --------- ------>ZmHOX2a(1)                                                                          -------->ATHB1 --------ANAC58                                                                             --------- --------ANAC58               <------NtERF2                           <-----------GT1      <---------YAB1 -----GLK1(1)            --------->ANAC58          <---------------AtSPL8      <---------CCA1(2) ---->GLK1(1)            --------->ANAC58          <---------ICU4    --------->YAB1        --------->ICU4 ---ICU4          ---------->DOF2                  --------------->AtSPL8 --------->At4g35610    ---- -->ATHB12<---------TOE1(3)  --------->LBD16      --------->ICU4     <---------ICU4        <---------ATHB51 -WOX13(1)<---------TOE2(3)<---------LBD16   --------->ANAC55(2)    --------->ICU4         <---------AHL20(2)   ttcctgcaaattgaggtttctaaagacaagccggagacattagttttaagtaataagtacttaaaaactaattatcaactcaaatctatagaaattattg  12595500                                                                           --------->MYB46(3)                                                                    <------NtERF2                                                           --------->CCA1(2)   <---------ATHB12                                                      ---------->DOF2      <xxxxxxxxxxxxxxxxsmallRNA(i)                                                ------>NtERF2      ------>NtERF2--------->YAB1     --                                               --------->ANAC46    --------->LBD16                 <-                                               <---------ATERF1(2) --------->ORA47(1)            ----                                               --------->ATERF1(2)--------->RAP2.6(2)            <---                                               <---------DEAR3(1) <---------RAP2.6(2)        <-------                                              --------->RAP2.6(3) <---------ATERF1(2)       <--------       ----------->GT1       ----------->GT1--------->ETT(2)      --------->DEAR3(1)        --------- >ATHB51                  ------------>MYB.PH3(1)<------NtERF2    --------->ATERF1(2)  --------->At4g35610 >ATHB12             --------->DAG2         <---------ETT(2)     --------->RAP2.6(3)   --------->ZAT2 ------>DOF2        ---------->DOF2        <------ZmHOX2a(2)     --------->ATERF1(1)  --------->GLK1(2)   aaagaaaacatgaaaaaacttgaaaagtaatcggttataaaaccgatcgacggcagaaaagatagaagccggccaaaaccactcatagaagctggatttg  12595600  Previous    Next  AGI:  At1g34460.1    Description:  CYCB1;4 (CYCLIN 3); cyclin-dependent protein kinase regulator. similar to CYC1BAT (CYCLIN B 1,2), cyclin-dependent protein kinase regulator [Arabidopsis thaliana] (TAIR:AT5G06150.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO18233.1); contains InterPro domain Cyclin-related (InterPro:IPR013763); contains InterPro domain Cyclin, N-terminal (InterPro:IPR006671); contains InterPro domain Cyclin-like (InterPro:IPR011028) Range:  from: 12595088    to: 12600075    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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