Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100         --------->HSFB2a(2)       <---------HSFB2a(2) ---------AHL20(2) -------->AHL20(2) --------AHL20(1) --------AHL20(2) ------->AHL20(1) ------->AHL20(2)                                                                 <---------ANAC46 -----AHL20(2)                                                                  <-----------HVH21 ---->AHL20(2)           ------->GAMYB                  --------->ZAT14      --------->At4g35610 ----AHL20(2)            --------->TOE2(3)              <---------ZAT14      <---------At4g35610 --->AHL20(2)      --------->YAB1            <---------At5g28300    --------->At5g28300 ---AHL20(2)      <---------YAB1            <-----------GT1      <---------At5g28300           <-----   atttattttccagtaacgttttgataaccgtagataatatgagcatttaccatttgactaaactgtttacggtgagtatagctgtcgagtagtctattca  12581700                                                                                            <xxxxxxxx                                                                                         <---------MYB55(2)                                                                                         --------->MYB46(3)                                                                                     XXXXXXXXXXXXXXXX                                                                                    --------->ANAC46                                                                                    --------->ANAC58               ------>ZmHOX2a(2)                                                    <xxxxxxxxxxxxxxxx              <------ZmHOX2a(2)                                                     --------->ANAC58              --------->CCA1(2)                                                    --------->WOX13(1)             <---------ARR11(3)                                               <-------TEIL------->GAMYB             --------->ARR11(3)       <---------ANAC58           <---------ZAT6<xxxxxxxxxxxxxxxxxxxxx             --------->AGP1           <---------ANAC46          <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(i2) <         ---------->DOF2              <---------ANAC58   <----------DOF2    <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)       <---------YAB1    --------->YAB1               <---------ARR11(3)   <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3) ------GT1   <---------AGP1   --------->ZAT6<-----------GT1 --------->YAB1<---------YAB1-------->P  <   ccaagttttatgaaagatctaaaacaaggataagactatttcgtttatactatcaatttcttttatagtggtatttctgattcatcaagcaaccatcgag  12581800             --------->ZAT6           ----------->RAV1(1)                          --------->TOE2(3)   >>>>>>>ZML2                                          --------->TOE1(3) xxxxxxxxxxxxxxxsmallRNA(si3)                        <---------ALFIN1 XXXX>MIR780.1                                      --------->MYB46(3)                             -- xxxxxxxsmallRNA(si3)                              -------->P    <---------TOE2(2)              ----- xxsmallRNA(le3)                                 --------->MYB46(3)                       ----------- ---------ARR14(2)                     --------->WOX13(1)        <---------TOE1(2)    --------->GLK1(1) -----------ARR10     <---------At4g35610<---------ATHB12     --------->YAB1          <---------GLK1(1)   cagttctagccctcaacagtagtcatctactacgaagacatcaatgagttaactaccaccttaatcatatgtttacattaggcctgggagttcggaaata  12581900                                                                       ------>ZmHOX2a(2)                                                                      --------->SPL7                                                                      <------ZmHOX2a(2)                                                                     --------->ARR14(2)                                                                <---------ARR14(2)                                                                --------->MYB52(1)                                                                --------->ARR14(2)                                                             <---------ANAC55(2)                                                             --------->ANAC46                                                             --------->ANAC58                                                             --------->ANAC55(1)                                                             --------->ANAC55(2)                                                             --------->ANAC58                    ----                                                             --------->bZIP60(2) <---------AHL20(2)                                                        --------->GLK1(2)       --------->AHL20(1)            --------->DEAR3(2)                          --------->ARR14(2)      <---------AHL20(1)          ------>MYB46(1)                               <---------ARR14(2)      --------->AHL20(2)          ------>MYB83                            --------->MYB52(1) <---------ARR14(2)         -----          --------->MYB52(1)                      ------>MYB46(1) --------->MYB46(3)            xxxxx ----->GAMYB--------->MYB46(3)           <---------ANAC46    --------->O2      --------->AHL20(2)<--- ---->MYB52(1)  <------ZmHOX2a(2) <---------MYB52(1)   <---------GLK1(2)----------->GT1         <---- >GT1   <---------MYB59          <-------GAMYB    ------>MYB83 ----------->HVH21<---------AHL20(2)   accgagaaaaccgaaccgatcaaaccgaaattttcggttatcggcgtaaaccgaacagaatccacgtaaccgatcggcaaaattaatttgggtaatcgga  12582000                   --------->ARR14(2)                  ----------->HVH21             <---------MYB52(1)           <---------MYB46(3)           <------MYB46(1)           <---------DEAR3(2)           <------MYB83          <---------DEAR3(1)         <--------P<---------ARR14(2)        <-----------HVH21                           --------->ARR14(2)     xxxxxxxxxxxxxxxx>smallRNA(s)                   --------->GLK1(2)   <---------GLK1(2)   --------->ARR14(2)  --------->LBD16   --------->TOE2(3)         <---------AHL20(2)   xxxxxxxxxxxxxxxx>smallRNA(i)          <---------MYB59--------->At4g35610   <---------ARR14(2)<---------LBD16     --------->TOE1(3) ------>NtERF2--------->ARR11(3) ----->GLK1(1)  <------MYB46(1)         ----------------->AGL1   ----------->TBP                    - ---->ARR14(2)  <------MYB83    ------>ZmHOX2a(2)   <---------ARR14(2)--------->ICU4                *TSS xxxxxxxxxxxxxxxxxx>smallRNA(se3)       ----------------->AG   <-----------TBP          --------->TOE2(3) ------GLK1(1) --------->MYB46(2)     <-----------GT1   <---------At4g35610             --------->TOE1(3) -----ARR14(2) --------->MYB59 <------ZmHOX2a(2)   <---------GLK1(2)---------->DOF2    --------->ZAT6   tttcggttcgggtcggttcggtaaccggaagcgatcggttttacctaaaccgagaatctgcagccatatataaagattatgggtcattaaccctaattta  12582100                             --------->ANAC55(2)                     ------>NtERF2                    --------->DEAR3(1)                   --------->ATERF1(1)                  --------->At4g35610                  <---------At4g35610                  <---------ATERF1(1)              ------>ZmHOX2a(2)             <---------At4g35610             <---------GLK1(1)                                            --------->YAB1            <-----------ARR10<---------ANAC55(2)                       --------->TOE2(3)            --------->ARR11(3)                                      --------->ARR14(2)            <---------AGP1   --------->ANAC46               <----------DOF2            --------->ARR14(2)                             --------->TOE2(3) <---------ICU4    <-----            <---------ARR14(2)                        <<<<<<<<<TBF1 <---------ARR14(2)        -------     --------->AHL20(2)      --------->ANAC58      <<<<<<<<<TBF1   ------>MYB46(1)        ------>MYB46(1)     <---------AHL20(2)      --------->ANAC58  --------->ARR11(3)  ------>MYB83           ------>MYB83 ----------->CBF--------->ZAT18                <---------ARR11(3)<---------MYB59       --------->MYB46(3)   gtctcaattttttggatctgcgctgcctcttacgaaactcaaatagagagttcttcttcttcctttaccaaatccataatcagtccataaccagcctaac  12582200                                                                                            <--------                                                                                            <--------                                                                                            ------->TEIL                                                                                            <--------                                                                                            ---------                                                                                            <--------          <---------ICU4                                                                   <---------ARR14(1)          --------->YAB1                                        <---------MYB52(1)         <---------CCA1(2)         <---------ATHB12                                 <---------ATHB12          <---------MYB52(1) ----TOE2(3)      --------->YAB1                  <---------CCA1(2)<---------At4g35610   --------->YAB1 -->MYB52(1)<---------YAB1           <----------DOF2 --------->TOE2(3)             --------->TOE2(3)   gtttcttctccatcatgaattcatcatcttcaacttgctctttcattctctcaaatctcaatctttgttagctcttctctattctcgttaatcgtatctt  12582300                    --------->ANAC58                  <---------ANAC58                  <---------ANAC58                                                     <---------At4g35610               <---------WOX13(1)                                                   <---------YAB1       <----------DOF2                                                     ------>ZmHOX2a(1)   <---------GLK1(2)--------->ANAC58                                   <---------ARR14(2) -ARR11(1)   <---------ICU4                                            <---------ARR11(3)     <------ ---ARR10    --------->ATHB12                             --------->YAB1<------ZmHOX2a(2)   --------- -TOE1(2)   <---------YAB1       ------>ZmHOX2a(1)        ----------->GT1------>ZmHOX2a(2) --------->ARR14(2) >ARR14(2)  --------->ICU4      --------->TOE2(3)     --------->ATHB12 --------->ARR11(3)  <---------ARR14(2) -ARR14(2)--------->YAB1    <----------DOF2          <-------TEIL      --------->ARR14(2)  <---------GLK1(2)   cgtctgattctttgatgattgctcgctaagctttccttatcaccaaaatcatggattcattggtaattctctagatcctattgattttcatcggattttc  12582400                                                             --------->YAB1                                                             <---------ICU4 <---------MYB46(3)                                                            --------->ICU4 <---------AtMYB61                                                            <---------YAB1<---------ANAC46                                                  ------->MYC3           <------MYB83                                                  <-------MYC2           <---------MYB46(3)                                                  <-------MYC3           --------->MYB52(2)                                               <---------ANAC58          <------MYB46(1)                                               <---------ANAC46  <---------ARR11(3)                                        <---------WOX13(1)--------->YAB1<---------DEAR3(1)                                      --------->ATHB12   --------->ICU4 <---------AtMYB61  <---------YAB1                 --------->AHL20(2)      <---------YAB1<---------MYB52(1) --------->AHL20(2)              <---------AHL20(2)  <-------GAMYB ------>ZmHOX2a(2) -----GT1                 <-----------GT1      <---------ANAC58  --------->ARR11(3)       <---------TOE2(3) >GLK1(1)       <-----------GT1 --------->AHL20(2)------->MYC2 <---------YAB1 <--------P  <---------TOE1(3)   aatttttatagttttatttttctaattttctcaatttaaatgatagattgcatgtggttatgattatgatctcgttggtggtagttttttttgaggttag  12582500                     <---------ATERF1(1)                     <---------At4g35610                     --------->At4g35610                    <---------DEAR3(1)                  <-----------HVH21                --------->SPL7              <-----------HVH21              --------->ORA47(1)              <---------SPL7              ------>NtERF2             --------->DEAR3(1)            <------NtERF2            --------->RAP2.3(1)            --------->ATERF1(1)           <---------ATERF1(1)           <---------RAP2.3(1)           ------>NtERF2------>NtERF2          <---------DEAR3(1)          --------->DEAR3(1)                                                                  <------         --------->ATERF1(1)         --------->MYB46(3)                                       <------         <------NtERF2--------->ATERF1(1)                                                --------->ATHB12        <---------ATERF1(1)     <-----------HVH21                                       <---------YAB1        <-----------HVH21      --------->DEAR3(1)    --------->TOE2(3)                  <---------AHL20(2)       <---------DEAR3(1)   <---------ALFIN1         --------->TOE1(3)               <----------DOF2<       --------->DEAR3(1)  ----------->HVH21------->TEIL     <---------YAB1 <----------DOF2   <------   agagattggccgtcgccgtccgtcgctgcctcaccgtcaacaaatgtatcgaaaaccctaattgttaatgggtttgggctttgtaaactttttattgggt  12582600  Previous    Next  AGI:  At1g34418.1    Description:  other RNA Range:  from: 12582100    to: 12582699    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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