Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                                             --------->ANAC58                                        ------>ZmHOX2a(1)                                  --------->ANAC58                       <---------------AtSPL8                                         --------->DAG2                       --------------->AtSPL8<-----------GT1                         ---------->DOF2        --------->AHL20(2)           <-----------GT1                           ---------->DOF2   tttcatagaaaaaaatgttttgttgtaagtactaaaattttcctatattactcaacttatatatgaataatgcatatgttgaaaagaaaaagctagcaaa  12577300                                                                                <-----------GT1             --------->AHL20(2)                    <---------AHL20(2)       --------->AHL20(1)             <---------AHL20(2)               <---------AHL20(2)            <---------AHL20(1)           --------->AHL20(2)                 --------->AHL20(2)            <---------AHL20(2)       <---------AHL20(2)                    --------->AHL20(2)             --------->AHL20(2)       --------->AHL20(2)             --------->YAB1        --------->ICU4 --------->YAB1   ------>ZmHOX2a(1)                 <-------TEIL  <---------YAB1<---------AHL20(2)   aactcctatttaaatttatatggctatctataaacaaaattcataaaaaaaatttcattgtaagtattaaaactgtattatattactcaacttatatatg  12577400                                                                             --------->YAB1                                                                           <---------YAB1                                                                           <---------AHL20(2)                                                                          --------->TOE2(3)                                                                        --------->AHL20(2)                                                                        <---------ARR11(3)                            <---------ATHB12                            --------->AHL20(1)                      ----------->GT1                                   <---------AHL20(1)         <-                    <--------P                                   ----------->GT1                  ---                 --------->MYB59 --------->YAB1             <---------ANAC46 <---------ICU4    <-----         --------->TOE2(3)--------->WOX13(1)   <------------CBF--------->ZAT14         <-----------GT1   aataatgcatatgttaattttggtaagttaatcaataaacatataagaaaattgattttcttatgtgtagtcaaaatattaatgacatttttctaaatta  12577500                              <---------ANAC46                          <------------CBF                        --------->AHL20(1)                        <---------AHL20(1)                        --------->AHL20(2)     <---------AHL20(2) <---------AHL20(2)                            --------->ANAC55(2)     -------    <---------AHL20(2) <---------AHL20(2)             <---------AHL20(2)      <---------------AGL15    --------->AHL20(2) --------->AHL20(2)             --------->AHL20(2)     <---------ANAC55(2) ---------DOF2    --------->TOE2(3)           <------ZmHOX2a(1)  <---------YAB1  ----------->TBP ------>TOE2(3)   <---------DAG2            <---------TOE2(3)------->TEIL    <---------ANAC46 <------ ------GT1        --------->TOE1(3)    <-----------ARR10 <---------TOE2(3) <-----------GT1<---------RVE1(1)   cctttattaatttttggtaaccttattaaattgtgtattcaaatctaaggaagtattttaatgtattttgatacttgttacctataaatgtgatattttg  12577600                                                                                           xxxxxxxxxx                                                                                        <-------TEIL                                                                                       --------->CCA1(2)                                                                                       --------->ARR14(1)                                                <------------CBF                      --------->ARR11(1)                                               -------->HAHB4                         --------->ARR14(2)                                               <--------ATHB1                         <---------ARR14(2)                                               <---------ICU4                    <----------DOF2                                       ----------->GT1                         <------ZmHOX2a(2)                                  ---------->DOF2      <---------TOE2(3)      <---------ARR14(2)                              <----------ID1   --------->ATHB51               --------->ARR14(2)                            --------->DAG2     --------->YAB1                 --------->ARR11(3) ----          <------NtERF2    ---------->DOF2    --------->ICU4                  <---------ARR11(3) <---        xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(i2)  <---------YAB1    xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(i2)- -------->AtSPL8         <------ZmHOX2a(1)    <---------ATHB51<xxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3) <x ---------AtSPL8       <---------TOE2(3)    --------->YAB1    <---------AHL20(1)------>ZmHOX2a(2)<xxx   tactctcatggtcgcgagagaagttgaggaaaaggagaaagttgtataataattgttgagataacatattttggtataccgatctttagatacgagctta  12577700                           <---------MYB59                        <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)           xxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)          <xxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)          <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)         <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)         <xxxxxxxxxxxxxxxxxxxxsmallRNA(se3)         <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)         <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)                           <---------AHL20(2)        ----------->RAV1(1)--------->TOE1(3)                             --------->AHL20(2)   <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)                                  <---------AHL20(1)  xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)                             <---------AHL20(2) <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)                               <---------AHL20(1) xxxxxxxxxxxx>smallRNA(le3)--------->TOE2(3)                <---------DAG2 ----->HSFB2a(2)       <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(s2) <----------DOF2 ------HSFB2a(2)    --------->ZAT18                      <-----------GT1 --------->AHL20(1) --------->DOF2<---------YAB1                   --------->ANAC58    --------->AHL20(2)            <-- xxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)             --------->ANAC58<---------AHL20(2)               ---- xxxxxxxxxxxxxxxxxxxsmallRNA(si3)       <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)               ----------   tggaaagtggcaacattgtgaatgcacaacctaaattatcaggcataagtaagaaattttgactttttattttattttattgaaaacttgttttggttat  12577800                              ------>ZmHOX2a(2)                             <------ZmHOX2a(2)                            <---------ARR14(2)                            ------->TEIL                            --------->ARR14(2)                       <---------AtLEC2                           xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(i2)     --------->ZAT14                         <---------WOX13(1)                         <---------ZAT14  <----------TaMYB80                    --------->At4g35610                          xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)                    <-------GAMYB  <---------ARR11(3)            <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)                    <---------At4g35610                         xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(s2)                   <---------MYB46(3) <----------DOF2    <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)                  xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(s2)  --------->HSFB2a(2)       xxxxxxxxxxxxxxxxxxx                xxxxxxxxxxxxxxxxxxxxxx>smallRNA(s2)     <---------HSFB2a(2) <----------DOF2             xxxxxxxxxxxxxxxxxxxxxx>smallRNA(i2)     <---------MYB52(1)    <----------DOF2            xxxxxxxxxxxxxxxxxxxxxx>smallRNA(i2)      <---------ARR14(2)   xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3) -------TOE2(3)xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(i2)  --------->ARR14(2) <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3) ----->YAB1 xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(i2)     xxxxxxxxxxxxxxxxxxxx>smallRNA(fl3) ->GT1     xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(i2)   xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)   aatgttttagtttttgttcggcagttgatggatccaagagctatatgtacgagcagttatggaaactctgtgcagggcctttgtgtgatattccaaaact  12577900                           <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)                          <xxxxxxxxxxxxxxxxxxxxsmallRNA(si3)                        --------->ANAC58                        xxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)                        --------->ANAC58       xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)                       <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)                     <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(i2)                    <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(i2)                    --------->TOE2(3)<---------ANAC58                    <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(l2)                <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(l2)                <----------DOF2      <---------ANAC58               <---------ANAC58    <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)               <---------ANAC58    <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(i2)              <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)             <-----------GT1       --------->ARR11(3) <---------DAG2            <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)     <----------DOF2      ----------->GT1------>ZmHOX2a(1)xxxxxxxxxxxxxxxx>smallRNA(s) xxxx>smallRNA(si3)<xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)                                xxxxxxxxxxxxx   tggagaaaatgtttattactttcctcaaggcaatatagagcttgtgagttctctctctttttgtttctctctctctctctctctctctctctctctctcc  12578000                                                                                                    x                                                                                    <----------DOF2 x                                                    <----------DOF2             <---------CCA1(2)   < xxx>smallRNA(i)  <----------DOF2       <----------DOF2                 <----------DOF2    <---------ANAC46   ctctcttctctctctcttctctttctctcttctctctctcgtctttctctctccctttcttctctctctctcttctttctctctatctttctctcgtgta  12578100                    <---------TOE1(3)              <---------DAG2           ------>NtERF2                                                 ------>ZmHOX2a(2)          <---------RAP2.6(2)                                          --------->ARR11(3)         --------->RAP2.6(3)                                      <xxxxxxxxxxxxxxxxsmallRNA(i)  <----        <-----------GT1  <-----------RAV1(2)                     xxxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)       ----------->HVH21<-------TEIL                           xxxxxxxxxxxxxxxxxxxxxx>smallRNA(s2)   <---------DAG2  <-----------------AGL1                    --------->MYB46(3)               <------  xxxxxxxxxxxxxxxxxxxxxx>smallRNA(i2)                       --------->ANAC58                  <------ xxxxxxxxxxxxxxx>smallRNA(i)                                --------->ANAC46                  <------ xxxxxxxxxxxxxxxxxxxxxx>smallRNA(i2)                        --------->ANAC58 --------------------->WRI1 -----------GT1<----------DOF2 --------->At4g35610   ----------->GT1   <---------ARR11(3)  <xxxxxxxxx   tgaaaccttttgacggccttttcaggttcaggcatctacaagagaagagttgaatgagttacaaccaatttgtgatcttccttctaagcttcaatgtcgt  12578200  Previous    Next  AGI:  At1g34410.1    Description:  ARF21 (AUXIN RESPONSE FACTOR 21); transcription factor. Identical to Putative auxin response factor 21 (ARF21) [Arabidopsis Thaliana] (GB:Q9C8N9;GB:Q9LNK2); similar to ARF22 (AUXIN RESPONSE FACTOR 22), transcription factor [Arabidopsis thaliana] (TAIR:AT1G34390.1); similar to ARF15 (AUXIN RESPONSE FACTOR 15), transcription factor [Arabidopsis thaliana] (TAIR:AT1G35520.1); similar to ARF12 (AUXIN RESPONSE FACTOR 12), transcription factor [Arabidopsis thaliana] (TAIR:AT1G34310.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO69513.1); contains InterPro domain Transcriptional factor B3; (InterPro:IPR003340); contains InterPro domai Range:  from: 12577700    to: 12580802    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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