Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                                                      -       <---------TOE1(3)                                                                          ---       <---------TOE2(3)-------->P  <---------MYB52(1)                                           <---    <----------CDC5    --------->MYB52(1)                                          -------->P  <----- ---------GT1        <---------MYB52(2)<---------YAB1                             --------->MYB52(1)- ------YAB1  ----------->GT1   --------->GLK1(2)                          ---------->DOF2    -------- ---MYB52(1) <---------TOE2(3)<---------GLK1(2)                  <--------P     <---------MYB52(2)---   ttacaggctgaggttaagaaaaaactaacccaaattctgttattctaatgggttttggagaattggggtaagtttggaaagaactaacccaagttcaatc  12542400 -------->TOE1(3)                                                                                  -- ---->TEIL                                                                                 <---------GLK1(1) --------GT1                                                                          ------>ZmHOX2a(2) ----ATHB12                                   ---------->DOF2                       <---------ARR14(2) -------->TOE2(3)                    --------->CCA1(2)                              --------->ARR11(3) ->WOX13(1)                         --------->ARR11(1)                              <---------ARR11(3) ----->P--------->YAB1--------->ALFIN1   <----------ID1  ----------->GT1     ---------->DOF2     ----   aaccttacaaacaaaattgtatatgtgtgggaagtatagatttgggccaaaagcccaaacagtttaacatgtagttagtaaaagatgatctggttatccc  12542500                        --------->ZAT6                       <---------ZAT14                     <---------WRKY45                     <---------WRKY12            --------->TOE1(2)                     <---------WRKY38(1)         --------->TOE2(2)       <---------WRKY18(1)                  <------MYB83                   --------->TOE1(3)<---------YAB1                  <---------MYB46(3)            ----------->RAV1(2)--------->YAB1                  <------MYB46(1)           <xxxxxxxxxxxxxxxxsmallRNA(s)--------->WRKY38(1)        --------->WOX13(1)       --------->AHL20(2)         <---------YAB1    ----------->GT1 --------->WRKY18(1)------->TEIL      <---------AHL20(2)        ----------->GT1 --------->ARR10<---------MYB52(1) <---------TOE2(3)  --------->ARR11(3)--------->WRKY45 ----->LBD16 <---------TOE2(3)   <---------AHL20(2)   <---------ARR11(3)--------->WRKY12   tgagatttgttaatcaacgttggtcaacactgaaattaatgaaccggttaacctgagattttatgtttatgatgttgaccacatgatgttatatacttcg  12542600                           <------MYB46(1)                     <---------AHL20(1)                     --------->AHL20(1)                   <---------ARR11(3)                   <---------AHL20(1)                   --------->AHL20(1)               --------->YAB1              <---------ATHB12                                   <---------AHL20(2)             --------->ANAC58                                 ----------->GT1             --------->ANAC58                                 --------->MYB46(2)            --------->WOX13(1)                                --------->MYB111(2)             <------         --------->ANAC58  <------MYB83                    <------MYB83                       <------         --------->ANAC58 --------->MYB59                  <------MYB46(1)                   <-------         <---------ANAC55(2)                              --------->MYB111(1)                <-------         --------->ANAC55(2)                              --------->MYB59                    --------         --------->ANAC55(1)                              --------->MYB46(2)               <---------TOE2(3)         --------->ANAC46 --------->MYB111(1)        --------->AHL20(1)             <----------DOF2     <-----------HVH21    --------->MYB46(2)         <---------AHL20(1)          <-----------GT1<----   aatttgtggtcacgcaatcaatatatattaggtagttttttttttttgggacatatatattaggtagttaaatgtgttttagtttactttcttaagattt  12542700         <---------AHL20(2)                          --------->AHL20(1)         --------->AHL20(1)                          --------->ARR11(3)         --------->AHL20(2)                   <---------HSFB2a(2)   <---------GLK1(1)     <----------DOF2 ---CCA1(1)                                   --------->HSFB2a(2)  ---------->DOF2    --------->MYB46(3) ---RVE1(1)                                <----------DOF2      <---------TOE2(3)   <---------ALFIN1 --GLK1(2)                    --------->ARR11(3)     <---------ARR11(3)             --------->MYB52(1) --ARR11(3)                   <---------ARR11(3)    --------->RVE1(1)               ----------->RAV1(1) ->ARR11(3)  --------->AHL20(2)        <----------DOF2      <----------DOF2  ---------->DOF2 -----AHL20(2)  ---------->DOF2  <----------DOF2    --------->CCA1(1)     ----------->RAV1(1)   tttttccaaaataaaataaaaagagtatgacaaatctttttctttcttttagaaatatcttgttttatggaaagcccaacaaagcccaacagcttttgtc  12542800                                                                 XXXXXXXXXXXXXXXXXXX>MIR394A/B                                                           --------->DEAR3(1)                                                          <------NtERF2                                                         ------>NtERF2                                                         --------->ABI4(1)                                                        --------->RAP2.3(3)                                                        --------->ANAC46                                                        --------->RRTF1(3)                                                        --------->DEAR3(1)                                                        <---------DEAR3(1)                                                        --------->RAP2.3(2)                            <------ZmHOX2a(2)          --------->DEAR4(2)                           <-----------HVH21           --------->ATERF1(1)                          ------->GAMYB                --------->ORA47(2)                         --------->MYB46(3)            --------->ERF1   <-----------HVH21                    --------->ANAC58     *TSS --------->ZAT6<-------GAMYB--------->WRKY12                   --------->ZAT18     ------->TEIL    --------->RAP2.3(1)            --------->YAB1               <---------TOE1(2)      <-----------GT1 <---------ATERF1(1)--------->WRKY38(1)     ----------->GT1--------->ANAC58--------->WRKY12--------->MYB46(3)  <---------MYB52(1)   ttcggaccagttaatcgcaagttcgcaacgatcagacgttgaacccttccactaatcgccgccgttgaaactccgttcacctctgtattgataacaaaat  12542900                                      --------->GLK1(2)                            --------------->AGL15                            <---------------AGL15                           --------------->AGL15                           <---------------AGL15                           <-----------------AGL2                           ----------------->AGL2                           ----------------->AG                           ----------------->AGL1                                                 ---                           <-----------------AGL1                                                 <--                          ----------------->AGL1                                           <---------ARR14(2)                          <-----------------AG                                             <---------ARR11(1)                          ----------------->AG                                     <---------ATHB12               <---------ALFIN1  <---------LBD16                             --------->YAB1--------->ARR14(2)       <----------DOF2    <-----------------AGL1                        ----------->GT1<---------TOE1(2)   <----------DOF2        <-----------------AGL2                        <---------ANAC46   ------->TEIL --------->HSFC1(2)       ----------------->AGL2                 <----------DOF2 --------->WOX13(1) <---------HSFC1(2)    --------->ARR14(2)             <---------ANAC58  <---------ANAC58  <---------ARR14(1) --------->HSFB2a(1)   <---------GLK1(2)              <---------ANAC58  <---------ANAC58  <---------CCA1(2)   cgaagctttctttagtcgcacttccgattcccaattggggaatctcttgtccgattgggttctatggctatatggcgtataatcaatcgttcgtatctca  12543000              <---------MYB52(2)              <---------ATHB12            --------->WOX13(1) --------->ANAC55(1)                        <---------ANAC58 --------->ANAC46                           <---------ANAC58 --------->ANAC55(2)             --------->ANAC58 --------->ANAC58                --------->ANAC46 --------->ANAC58             --------->ZAT14 <---------ANAC55(2)          <---------ZAT18   <---------ANAC58----------->GT1 ------>ARR14(2)              <---------ZAT14   <---------ANAC58<---------ANAC46           <--------- -------ARR14(2)<-----------GT1  --------->ANAC58          <---------ICU4      ---------->DOF2 <-----   aatacgcatcaaaccaattaaccagaaactactacactcaagtttgtcttgcttcttctactcatgtcgtaaaacagacaacaaagttgtcttcttttga  12543100                                                   <---------GLK1(2)                                  --------->ARR11(3)   <---------ANAC58                                  --------->ARR14(2)   <---------ANAC58                                  <---------ARR11(3)--------->GLK1(2)                        <---------ARR11(3)        <---------At4g35610        <-----------GT1 ----------------->AGL2 <---------ARR14(3)  <---------ARR11(3)     <---------ZAT2 ----------------->AGL3 --------->ARR11(3)  --------->ARR11(3)     --------->ZAT2   <----------DOF2 ----------------->AG   --------->ARR14(3) <---------GLK1(2)       --------->At4g35610 -DOF2         --------------->AtSPL8   --------->HSFB2a(2)        <---------At4g35610           ---- ------GT1  --------->CCA1(2)    <---------CCA1(2)--------->At4g35610 <-----------RAV1(2)  <---------YAB1   catcccaaattcagatatatgtacaagaccttctaatatcttccaaaatctcagattccttgctacttcagctcaggtattactctctttgttttgataa  12543200                                                                                                  <--                                                                                                 <---                                                                                           --------->ALFIN1                                                                                           --------->MYB111(2)                                                                                           --------->MYB111(1)                   <---------At4g35610                                                     --------->MYB55(2)                   --------->ZAT2                                                         <--------P                   <---------ZAT2   <----------DOF2                                  <---------ANAC46                   --------->At4g35610    <--------P          <----------DOF2      <-----------RAV1(1)      <---------MYB52(1)         <---------------AGL15  <---------ANAC55(2)<---------ANAC58<---------MYB46(3)    <---------ANAC46             --------------->AGL15  <---------ANAC58   <---------ANAC58--------->MYB52(2)    <---------ANAC58            <-----------------AGL1  --------->ANAC55(2)<-------GAMYB <-------GAMYB    <---------ANAC58            <-----------------AGL3  <---------ANAC58  <---------MYB46(3)<-------GAMYB ------>DOF2  <----------DOF2  <<<<<<<<<TBF1            ----------->GT1<----------DOF2  <---------ANAC46   aaagtttcgtttttttctttcagctctgttttcttcttcttttggtagctatgcaatttcgtaactttcagtactttggttgcaattgtggggttgttgc  12543300  Previous    Next  AGI:  At1g34360.1    Description:  translation initiation factor 3 (IF-3) family protein. similar to leucine-rich repeat family protein / extensin family protein [Arabidopsis thaliana] (TAIR:AT3G19020.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO47407.1); contains InterPro domain Initiation factor 3; (InterPro:IPR001288) Range:  from: 12542841    to: 12546150    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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