Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                                            <---------YAB1                                                                                        --------->YAB1                                                                                       <---------YAB1                                                                              --------->ANAC55(2)                                                                           xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(s2)                                   ---------->DOF2                         <---------ARR14(2)            --------->AHL20(2)   --------->YAB1                            <---------MYB52(1)            <---------AHL20(2) ------>MYB46(1)                             --------->ARR14(2)     --------->YAB1            ------>MYB83                      <---------ICU4  ------->TEIL ------->YAB1         ---------->DOF2----------->GT1        --------->ANAC46  <---------ANAC55(2)   atcacaatactaatttaaattccaaaaaacacctatcaaaagtgaattttcgcataacaaactcgaaacattacaccgatatgtatttgatgataatttg  12519800                                 <----------DOF2                            xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)                           --------->TGA1a                           <---------O2                           <---------ANAC58                           <---------TGA1a                           --------->O2  <---------YAB1                           --------->ANAC55(2)                           <---------ANAC46 <---------GLK1(1)                           <---------ANAC55(1)                                               --------                           <---------ANAC58 --------->GLK1(1)                              <---------AHL20(2)                           =================bZIP_DOF        ------>ZmHOX2a(2)      <---------GLK1(1)           xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(i2)  <-------GAMYB                     --------->GLK1(1)  ----------->RAV1(1)      ==============================MYC_MYB                <---------ATHB12  <---------------AGL15    <---------bZIP60(2)  <-----------RAV1(1)     <---------GLK1(2)  --------->AHL20(2)  --------------->AGL15  xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)    <xxxxxxxxxxxxxxxxsmallRNA(i)   ataacaacatatggtattcttcgaaattgacgtgtctttatttctgatttctgttgaagtgatcccaattcaaagaatttcaatgaaatccatttaaaag  12519900                                   <------MYB46(1)                                   <------MYB83                             <---------AHL20(2)                            <---------AHL20(2)                  ----------->GT1                            --------->AHL20(2)            --------->ICU4                <-----------GT1    ----------->GT1     <---------YAB1               --------->AHL20(2) --------->MYB59<---------AHL20(2)          --------->AHL20(2)--------->AHL20(1)   --------->AHL20(2)                    --------->AHL20(1)       --------->YAB1  --------->AHL20(2)        <---------ATHB51                 --------->AHL20(2)   <---------AHL20(2)----------->GT1            --------->AHL20(2)           --------->AHL20(2) -->DOF2--------->TOE2(3)   <---------AHL20(1)  <---------AHL20(1)   --------->ICU4    --------->ARR11(3)   actatataaacataaatttaactatgtaaataaaatttggtaacatacaaaataattctaattatgtagtaatatttgataatataaaatatactgcaac  12520000                --------->AHL20(2)                --------->YAB1             --------->YAB1           --------->AHL20(1)                                ----------->GT1           --------->AHL20(2)                               ----------->GT1             <--------P          --------->YAB1                            --------->ZAT14                    <-------GAMYB        <---------AHL20(2)                          <---------ZAT14             <----------DOF2        --------->AHL20(2)                         ----------->GT1        ---------->DOF2  ----------->GT1<---------AHL20(2)                --------->ALFIN1 <----------ID1    <---------MYB46(3)   ttgttagtaaaaaaataataaaaatgtgtaaatgggattgagagttttgaagagtgtagaaatgggtaaaacgagaaaaagcctttgggggttgaatttt  12520100                                                                                                 <---                                                                                                <----              ----------->HVH21                                                               <------            ----------->RAV1(2)                                         ------>ZmHOX2a(1)     <------            --------->At4g35610   ------>ZmHOX2a(1)      ------------>CBF                     <------            <---------At4g35610------>ZmHOX2a(1)         *TSS    <---------CCA1(2)<----------DOF2----       <-----------GT1     <---------ALFIN1      -------->P      <---------At4g35610  --------->HSFB2a(2)   tggctaacttcaccatctgacactctccaactcctcctctctcttcagactaacccaaattcaattcatctctcctctctctctctttctcgagtcgcgt  12520200                                       --------->ZAT2        <----------DOF2                ----------->RAV1(2) <<<<<<<<<TBF1                         --------->At4g35610 ------ARR14(2)        --------->At4g35610 ----------->ARR10 -----CCA1(2)     --------->ETT(2)     <---------ZAT2                             --------->MYB52(1) ---ANAC58   <---------ANAC46          <---------At4g35610                    --------->ARR11(3) ---ANAC58   <---------ANAC58  <---------GLK1(2)                    <----------DOF2            >>>>>> ---ANAC46   <---------ANAC58--------->ANAC46 <---------At4g35610<---------ARR11(3)         >>>>>>>>>TBF1 ----->ARR14(2) --------->REM1(2)    <-----------RAV1(2)--------->ZAT14       <---------ARR11(3)  >>>   ttcttcttctcttttccttgtagacatctccacgattcttcagctgagagcttctcacttctctctagagctttgctcaagaactagcgacgaagaagaa  12520300                                      --------->GLK1(2)     --------->GLK1(2)         <------ZmHOX2a(2)     <---------ARR14(2)        --------->CCA1(2)     --------->ARR14(2)       <---------ARR14(2)    <---------GLK1(2)         --------->ARR14(2)         <----------DOF2    --------->ANAC46 >>>>>>>>>TBF1                <---------ARR11(3)      <---------ARR11(3)    --------->ANAC58 >>>TBF1                      --------->AGP1          --------->ARR11(3)    --------->ANAC58 >>>>>>TBF1               <---------LBD16           <---------TOE1(2)     ---------->DOF2      ------   gaagaagaatctgaacttcaatctaattcccagatccaagtttctgactcttcttaggtctttcttctccattccttcaagctactgaattgaatttgtc  12520400                                                                        <---------ANAC46                                                                        <---------ANAC58                                                                   <------MYB46(1)                                               --------->ARR11(3)  <------MYB83                                         <----------DOF2   --------->ATHB12                                  ------>ZmHOX2a(1)       <-------TEIL  <---------ANAC58      <------ ---->ID1  <----------DOF2   <---------GLK1(1) <---------ARR11(3) <---------TOE1(2)--------->GLK1(2)   gttttgggttcttctttagctagggttttcgatttcctcttgactttaaaatcttcttgattcattggcaggtttcgtatgagagaatcaagtttttttc  12520500                               <----------DOF2                              <---------ANAC58                              <---------ANAC46                              <---------ANAC58  <---------GLK1(1)                           <---------MYB52(1)   --------->GLK1(1)                          <-------GAMYB        --------->ARR14(2)                         <---------MYB46(3)    <---------ARR14(2)     <---------MYB46(3)                         <-----------RAV1(1)  <------ZmHOX2a(1)       ----------->GT1             ----------------->AGL3        --------->YAB1            <---------TOE1(2)             ----------------->AGL2       <---------ATHB12           <---------TOE2(2)              = -----GT1    <-----------------AGL3 --------->AtLEC2     <---------ZAT14                            -   cactgagcaatttgctccattaatggactgttgctttcatacaaatcaggatttgcgattacagtgtttcgctggttacattgttcatccatttcaagtt  12520600                                                                  <---------------AGL15                                                                  --------------->AGL15      --------                                                                 ----------------->AGL2     ---------                                                                 ----------------->AGL3   <---------ANAC46                                                                 <-----------------AGL2   <---------ANAC58                                                                 <-----------------AG     <---------ANAC58                                   <---------ANAC58              <-----------------AGL3  <---------MYB46(3)                                   <---------ANAC58             --------->At4g35610      --------->MYB55(2)                   <------ZmHOX2a(2)                            <---------At4g35610     <---------ANAC46               --------->LBD16     <---------ANAC46             ----------->GT1      ----------->HVH21 =========================HOX2a_HOX2a             --------->HSFB2a(2)        --------->HSFC1(2) ----->ZmHOX2a(1) <---------ARR11(3)<---------SPL7<---------HSFB2a(2)        <---------HSFC1(2)  <---   tcctagagagttcaatccgagatcagagtttttttttgcgtatggagagtttcgagagagtttgagagctaaatttggaaacttgctgtgatgggtgggc  12520700  Previous    Next  AGI:  At1g34320.1    Description:  similar to unknown protein [Arabidopsis thaliana] (TAIR:AT5G08660.1); similar to Os05g0430300 [Oryza sativa (japonica cultivar-group)] (GB:NP_001055623.1); similar to unknown protein [Oryza sativa (japonica cultivar-group)] (GB:BAD82727.1); contains InterPro domain Protein of unknown function DUF668 (InterPro:IPR007700) Range:  from: 12520157    to: 12524348    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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