Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                      --------->ANAC55(2)                    <---------ANAC58         --------->CCA1(2)                                  <----    <---------AHL20(2)            --------->YAB1  --------->TOE2(3)          <---------------------WRI1   <---------AHL20(2)    <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)           --------->ANAC46       ------   --------->AHL20(2)  --------->ARR14(2)   --------->ARR11(3)          --------->ANAC58       <----- ------>YAB1        <---------ANAC58        <---------ARR11(3)          --------->ANAC58     xxxxxxxx ------>AHL20(2)    <---------ANAC46<---------YAB1--------->TOE1(3)   --------->ZAT6      <xxxxxxxxxx ---GT1   <-------TEIL <---------ARR14(2)   xxxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)    <xxxxxxxxxxxxxx   tgaaattaaatatacatatcatgcgtattcgctaaaacataatagagatataccttaagatgaatagcaataacacgacattgaagcttagaaggaagat  12511100           <-----------GT1      <---------ANAC46      <---------ANAC58      <---------ANAC58     <---------MYB46(3) --ZmHOX2a(2) --->ARR11(3) ----ARR11(3)                                           ----------->GT1 xxxxxxxx>smallRNA(i)                         --------->TOE1(3) xxxxxxxxxxxxsmallRNA(s2)                     --------->TOE2(3) xxxxxxxxxxsmallRNA(fl3)                     ----------->RAV1(2)----------->GT1   cacaaattggttgtaactcattcaactcttctcttgtagatgtctcaacctgaaaaccccgttaaaaggtttcatacagagagagagagaagagagagag  12511200                                                                           --------->ANAC58                                                              ----------->HVH21                                                     --------->ANAC58   <------ZmHOX2a(1)                                                     --------->ANAC58 <---------TOE2(3)                                             <xxxxxxxxxxxxxxxxsmallRNA(s)  --------->ANAC58                                         xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(i2)        <---------DAG2                   ---------->DOF2       xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)    <-----------GT1              ---------->DOF2           <xxxxxxxxxxxxxxxxxxxxsmallRNA(si3) ----------->GT1   --------->CCA1(2)       <xxxxxxxxxxxxxxxxsmallRNA(i)<---------ARR11(3)---------->DOF2      <xxxxxx   agaagagatggagagagaaagaaaagagagggagagagagagagagagaactcacaagctctatgtgaccttgaggaaagtaataaaccttttctccaag  12511300                          <xxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)                          <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)                         <xxxxxxxxxxxxxxxxsmallRNA(s)                        <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)                        <xxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)                        <xxxxxxxxxxxxxxxxsmallRNA(s)                        <xxxxxxxxxxxxxxxxsmallRNA(i)                       xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)                       <---------ALFIN1                      --------->LBD16                     --------->ANAC58                     --------->ANAC58<---------ARR14(2)                    <---------LBD16  --------->MYB52(1)                   <xxxxxxxxxxxxxxxxsmallRNA(i)                  <xxxxxxxxxxxxxxxxsmallRNA(i)                              ----------->GT1                  <xxxxxxxxxxxxxxxxsmallRNA(s)                             <---------HSFB2a(2)                  --------->PCF2  <---------HSFB2a(2)                      --------->HSFB2a(2)                 <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)                     <---------LBD16                 <-----------HVH21--------->HSFB2a(2)                    -------->P              xxxxxxxxxxxxxxxx>smallRNA(i)                              ------->GAMYB             ---------->DOF2  xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)     --------->MYB55(1)             <xxxxxxxxxxxxxxxxsmallRNA(s)                              <---------MYB52(2)           <xxxxxxxxxxxxxxxxsmallRNA(s)                                <---------MYB111(2)          <xxxxxxxxxxxxxxxxsmallRNA(i)                                 <---------MYB46(2)          <xxxxxxxxxxxxxxxxsmallRNA(s)                                 <---------MYB55(2)         xxxxxxxxxxxxxxxx>smallRNA(s)--------->ARR14(2)          --------->WOX13(1)     <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)                      <-------TEIL--------->LBD16     <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)                     <------ZmHOX2a(2)    <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)                      --------->ARR14(2)    xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)                     <---------ARR14(2)    xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)              --------->ARR11(3)--------->MYB52(1)     <----    ---------->TaMYB80<xxxxxxxxxxxxxxxxsmallRNA(i)--------->YAB1------>ZmHOX2a(2)            -------- xxxxxxxxxxxxxxxxxsmallRNA(si3)  <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3) --------->MYB46(3) <---------ICU4   ttttggaatatcacacaaaggtcccgcacagagtttccataactgctcgtaaacatagctcttggatccatcaactaccggaaaaaaactaaaaattata  12511400                                                                           xxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)                               ----------->GT1                             <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)                              ----------->GT1                        <---------ZAT18                             --------->DAG2                      xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)                            ---------->DOF2                      --------->ALFIN1                         --------->AHL20(2)                   <---------TOE1(3)                     --------->AHL20(2)                       <---------TOE2(3)                     <---------AHL20(2)                      <-----------RAV1(2)                     --------->AHL20(1)                 <---------YAB1    --------->YAB1    ---------                <---------AHL20(1)                      xxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)<--------                <---------AHL20(2)                  xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(l2)<----------DOF2 -------GT1     --------->AHL20(2)       <---------ANAC58xxxxxxxxxxxxxxxx>smallRNA(s)<xxxxxxxxxxxxxxx ->YAB1         --------->AHL20(1)       <---------ANAC58xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)   accaaaacaagttttcaataaaataaaataaaaagttaaaatttcttacttatgcctgataattcaggttgtgcattcacaacgttgccactttccataa  12511500              xxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)             ------>ZmHOX2a(2)            <------ZmHOX2a(2)           <---------ARR11(3)           --------->ARR11(3)              -------->ATHB1           <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(i2) <-----------GT1       ---------->DOF2                     <--------HAHB4   ------->TEIL                            --------->ATHB51   <---------ARR14(2)                      <---------ICU4   <---------ARR11(1)                      --------->YAB1   --------->ARR14(2)                     <---------YAB1                                     <-------  <---------CCA1(2)                       <---------ATHB51                                   <-------  <---------ARR14(1)                      --------->ICU4           ------>ZmHOX2a(1)         -------- >HSFB2a(2)--------->ARR14(2)         ------------>CBF            --------->TOE2(3)        --------->ZAT18 -HSFB2a(2)<---------ARR14(2)     --------->TOE2(3)   <----------DOF2xxxxxxxxxxxxxxxx>smallRNA(s)<--- xxxxxxxsmallRNA(le3)      --------->AHL20(1)<---------YAB1   <----------DOF2           ---------->DOF2   gctcgtatctaaagatcggtataccaaaatatgttatctcaacaattattatacaactttctctctttcctcaacttctcttgcgaccatgagagcgcag  12511600                                                                                 --------->AHL20(2)                                                                       --------->DAG2                                                ----------->ARR10      <---------TOE1(3)    ---------      <-----------TBP              --------->AHL20(2)                  <---------TOE2(3)   <---------TOE2(3)     --------------->AGL15         <---------AHL20(2)             --------->AHL20(2)     ---------->DOF2 --ZAT14                           --------->AHL20(1)             <---------AHL20(2)  --------->YAB1 --ZAT18                           <---------AHL20(1)            --------->AHL20(1) --------->AHL20(1) ->ZAT18                      ------------>CBF------>ZmHOX2a(1)  <---------AHL20(2) --------->AHL20(2) ------GLK1(2)          --------->YAB1       --------->TOE2(3)   --------->AHL20(2)--------->YAB1   aatatcacatttataggtaagaagtatcaaaacacaataaaatacttccttagatttgaatactaaatttaataaggttaccaaaaaataataaaggtaa  12511700                                                             --------->ATHB12                                                         --------->ATHB12                                                    <---------AHL20(1)                                             --------->AHL20(2)                                             <---------AHL20(2)                      <-----------GT1       <---------AHL20(2)                 --------->ARR11(3)         --------->AHL20(2)                 <---------AHL20(2)         <---------AHL20(1)   <-----------GT1                 --------->AHL20(1)    ------------>CBF  <---------AHL20(2)                 <---------AHL20(1)--------->AHL20(2)   <---------YAB1               <---------TOE2(3)   <---------AHL20(2)<---------AHL20(2)              --------->AHL20(2)--------->YAB1 <-----------TBP <---------WOX13(1)              --------->YAB1   <---------AHL20(2)   --------->AHL20(1)  <---------MYB59 -->GT1    --------->TOE2(3)  --------->AHL20(2) --------->AHL20(2)   -------->P   tttagagaaatttcattaatattttgactacatataataaaatcaatttttttatatatttattgattaacttaccaaaatcaacatatgcattattcat  12511800                                                                                                  <--                                                                                                  ---                                                                                                 ----              <---------YAB1                                                                     <---             --------->AHL20(1)                                                                <-----             --------->AHL20(2)                                                         --------->AHL20(2)             <---------AHL20(1)    ----------->GT1  --------->ARR11(3)              <---------AHL20(2)             <---------AHL20(2) --------->YAB1      <---------ARR11(3)            --------->AHL20(2)       ----------->GT1  --------->AHL20(2)    <----------ID1                      <---------AHL20(2)   atataagttgagtaatataatacagttttaatactcatagtaaaaaaaaaaacaaatctttgaaatttgtttatagatagccatataaatttaactagga  12511900             --------->ATHB12             <---------ICU4              <---------ANAC58            --------->ICU4               <---------ANAC46          <---------ICU4                 <---------bZIP60(2)          --------->YAB1                 <---------ANAC58    <---------ANAC58                <---------ANAC58                                    <----------DOF2    --------->ANAC55(2)             <---------ANAC58                                    <---------DAG2    <---------ANAC58             <----------DOF2                                 <---------YAB1 -------ARR11(3)             --------->GLK1(1)                                  <---------TOE1(2) ------>ARR11(3)             <---------GLK1(1)                    ------>ZmHOX2a(2)    <---------ANAC58 ----->GLK1(1)        xxxxxxxxxxxxxxxxxxxxxx>smallRNA(s2)       --------->ARR11(3)     <---------ANAC58 ------GLK1(1)    <---------ANAC55(2)   <------NtERF2   --------->YAB1    --------->ANAC55(2) -ZmHOX2a(1)<---------YAB1 <------ZmHOX2a(1)         <----------DOF2      <---------ANAC55(2) <------   gttcttacttgatcatgattacatgagtaggaattctttggtgtcgtgttgatgcctttcatatgtgatctatagtacgtctcatgtttgctttttcttt  12512000  Previous    Next  AGI:  At1g34310.1    Description:  ARF12 (AUXIN RESPONSE FACTOR 12); transcription factor. Identical to Auxin response factor 12 (ARF12) [Arabidopsis Thaliana] (GB:Q9XID4;GB:Q5IRX5); similar to ARF21 (AUXIN RESPONSE FACTOR 21), transcription factor [Arabidopsis thaliana] (TAIR:AT1G34410.1); similar to ARF22 (AUXIN RESPONSE FACTOR 22), transcription factor [Arabidopsis thaliana] (TAIR:AT1G34390.1); similar to ARF15 (AUXIN RESPONSE FACTOR 15), transcription factor [Arabidopsis thaliana] (TAIR:AT1G35520.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO69513.1); contains InterPro domain Transcriptional factor B3; (InterPro:IPR003340); contains InterPro domain Aux/IAA Range:  from: 12508526    to: 12511498    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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