Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                                                      <                                                                                                    <                                                                                           ----------          --------->AHL20(1)                                                             ------>ZmHOX2a(2)          <---------AHL20(2)                                                         <---------YAB1 -          --------->AHL20(2)                                                  <---------HSFB2a(2)   -          <---------AHL20(1)          <---------MYB52(2)                      ==================HOX2a_HOX2a      <---------ALFIN1                --------->MYB46(3)                      ------>ZmHOX2a(1) <xxxx     --------->LBD16          ----------->GT1      <---------TOE1(1)          --------->HSFB2a(2) ---    --------->ANAC46       ---------->DOF2         <---------TOE2(1) <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)  <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3) --------->MYB52(1)         <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)   aactccccccaatttattaagaactaaataaaaggaaataacaaacgaatagtacgagggacaccaggcccattaacatcctcgaacatgatcgaaagaa  12483200                                                                                      ------>ZmHOX2a(1)                                                                                     <xxxxxxxxxxxxxxx                                                                                    <xxxxxxxxxxxxxxxx                                                                        <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)                                                                       xxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)                                                                       xxxxxxxxxxxxxxxx>smallRNA(i)                                                                     <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)                                                                   xxxxxxxxxxxxxxxx>smallRNA(s)                                                                   <xxxxxxxxxxxxxxxxsmallRNA(i)                                                                   <xxxxxxxxxxxxxxxxsmallRNA(s)                                                                  <xxxxxxxxxxxxxxxxsmallRNA(s)                                                                  <xxxxxxxxxxxxxxxxsmallRNA(i)      -                                                            xxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)      =            --------->YAB1                                 xxxxxxxxxxxxxxxx>smallRNA(s)     xxxxxxxxx    <---------HSFB2a(2)                                    <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(l2) <xxxx   <---------LBD16                                 <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)   <xxxxxxxxx  <-------TEIL                                    xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)    xxxxxxxxxx --------->GLK1(2)                                xxxxxxxxxxxxxxxx>smallRNA(s)   xxxxxxxxxxxxxxxxxxxx --------->ARR14(1)                               <xxxxxxxxxxxxxxxxsmallRNA(i)  --------->At4g35610<x --------->CCA1(2)                            --------->ANAC58   <xxxxxxxxxxxxxxxxsmallRNA(s) <xxxxxx ---------GLK1(2)                 <---------ARR11(3)<xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3) <xxxxxxxxxx ---------ARR14(2)                --------->GLK1(2)<xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3) xxxxxxxxxxxx >DOF2   <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)xxxxxxxxxxxxxxxx>smallRNA(i)      <xxxxxxxxxxxxxxxxsmallRNA(le3) -------->ARR11(1)               <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(i2)<xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3) -------->ARR14(2)   ---------->DOF2  ---------->DOF2<xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)<xxxxxxxxxx xxxxxxxxxxxxsmallRNA(i)    >>>>>>>>>MYB2     --------->ANAC58xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)<x -------->ARR10<xxxxxxxxxxxxxxxxsmallRNA(i)  <xxxxxxxxxxxxxxxxsmallRNA(s)  xxxxxxxxxxxxxxxx>smallRNA(i)   cagattcgggacaaacatcaagagaaagaaaaccaaaatctaaagagaacgcatagtttgctaatccatcggcaagacgattagcttcctatacacatga  12483300                          ---------->DOF2                         <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)                         <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)                   --------->LBD16                  <---------O2                  --------->O2                  <---------ANAC55(2)                  --------->ANAC55(2)                  ===================bZIP_DOF                  ===================bZIP_DOF                  --------->TGA1a                  <---------TGA1a                  <---------ANAC58                ------------->DYT1              <-----------HVH21          -------->P     <xxxxxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)    --------->LBD16<xxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)  <---------LBD16 <---------ANAC58 xxxxxxxxxxxxxxxx>smallRNA(i)                       xxxxxxxxxxxxxxxx>smallRNA(i) xxxxxxxxsmallRNA(le3)  <xxxxxxxxxxxxxxxsmallRNA(si3) xxxxxxxsmallRNA(si3)  <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(i2) <---------MYB46(3)                      < ------->P==================MYC_MYB                ---------->DOF2                                  - ===========================MYC_MYB               <------ZmHOX2a(1)                                 < xxxxxxxxxxxxxx>smallRNA(fl3)                  <---------LBD16                                     -- xxxxxxxxxxxxxxxxxxsmallRNA(se3)               <-----------RAV1(2)                                 -- xxxxxxxsmallRNA(i)<-----------HVH21           <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)                -- xxxxxxxxxxxxx>smallRNA(si3)                 ------->TEIL <---------At4g35610                  <----- xxx>smallRNA(si3)<---------ANAC46     <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)                    ------ xxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3) xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)     <---------TOE2(2) ---- xxxxxxxxxxxxxxxxsmallRNA(fl3)   <xxxxxxxxxxxxxxxxxxsmallRNA(si3)       <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3) xxxxxxxxxxxxxsmallRNA(si3) <xxxxxxxxxxxxxxxxxxxxsmallRNA(le3)         --------->ANAC46     --------- xxxxxxxxxxx>smallRNA(si3)<xxxxxxxxxxxxxxxxsmallRNA(i)    --------->At4g35610 <xxxxxxxxxxxxxxxxxxxxxsmallRNA(se3) xxxxxxxxxxxxxsmallRNA(le3)--------->DAG2--------------->AtSPL3 <-------TEIL<xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3) xxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)<xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(s2)<-----------HVH21   ---------   gtaacccggactaaccagtcccgtgagataaagtcatggcacaaacgtaccaggaaagacagcggatgcattccagtcacccatgtttgtaagaacccca  12483400   ------>MYB83   ------>MYB46(1) ------->GAMYB ---------MYB55(2)            --------->LBD16 -------->MYB46(3)       <---------ALFIN1 ---------MYB52(2)   --------->At4g35610                                       <---------CCA1(2)   -- ------->ANAC58      <---------ZAT2                                          --------->ANAC46    <--- ------->ANAC58      <---------At4g35610                                    --------->LBD16     ----- ------->ANAC46      --------->ZAT2 --------->ANAC58                    --------->ANAC46      <------ ----ALFIN1        <---------ALFIN1 --------->ANAC58           --------->TOE2(3)              ------- --->ANAC46  <---------ALFIN1 <-----------HVH21       <---------YAB1 --------->ZAT18  ------>NtERF2-- ----->MYB46(3) --------->AtMYB61 ---------->DOF2--------->ANAC58    <---------ZAT18  --------->LBD16 >ANAC58  --------->ARR14(2)--------->MYB46(3)   --------->ANAC58    --------->ZAT14 --------->ANAC46 >ANAC58  <---------ARR14(2)<---------MYB55(2) <-----------RAV1(2)   <---------ZAT14<---------LBD16--   caaccaacttagaatccacctccagctccacccgtcgaaagcctctctcccaggctatgactaaaccatagtacactccccataactccgccatgggaac  12483500                               ------>MYB46(1)                               ------>MYB83                              --------->MYB55(1)                             <---------MYB59                             <---------MYB111(1)                             <---------MYB52(2)                             <---------MYB55(2)                             --------->AtMYB61                             <---------MYB111(2)                             <---------MYB46(2)                            --------->ANAC58                            --------->ANAC46                            --------->ANAC58   <---------At4g35610     ------>MYB83   --------->At4g35610     ------>MYB46(1)  xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)                            <---------YAB1 ---->MYB83               <---------ALFIN1                 <---------ANAC46                     <---- ------MYB59       ------->GAMYB --------->MYB46(3)        <---------ANAC58                     <---- ---->DEAR3(2)    --------->ANAC58                         <---------ANAC58            <---------ZAT14 ---ARR14(2)      --------->ANAC46                    --------->ATHB12                 --------->ZAT14 -->ARR14(2)   <---------WRKY38(1)                   <---------YAB1<---------TOE2(3)  <----------DOF2 ---->MYB46(1) <---------WRKY12--------->MYB52(1)    <---------AHL20(2)         <---------GLK1(2) ------->MYB52(1) --------->ANAC58                <----------DOF2 <-----------GT1--------->GLK1(2)   cgaacagatgcctatgttcaacgcaaacccacctaaccactcaccttcttctctttttattgggtatttaacattgtatttagaatctctttactggagc  12483600                                                       --------->YAB1                                                      <---------YAB1                                                      --------->ICU4                                                    --------->YAB1                                                    <---------ICU4                                                   <---------YAB1                                              --------->YAB1                                         <---------ARR11(3)                                         --------->ARR14(2)                                         <---------ARR14(2)   <----------ID1          <----------DOF2          <-----------GT1 --------->ICU4 ------->GAMYB            <---------AHL20(2)  ---------->ID1               --------->AHL20(2)--------->YAB1  <---------MYB52(2)       --------->AHL20(2) -----ANAC58                 --------->AHL20(2)  <---------ICU4  --------->MYB46(3)----------->GT1 <- -----ANAC58*TSS       ----------->RAV1(1)   <-------TEIL<---------YAB1  <---------YAB1   <---------AHL20(2)   gtttgtcgttttctttagggaatgccaacaaaataatataccatatattcatcatcatgataatacaacaaacttatatttgtatgggttaattttatat  12483700                             --------->ANAC58                             --------->ANAC55(2)                             --------->ANAC58                      <---------AHL20(2)                     --------->YAB1                  --------->YAB1              --------->AHL20(2)   <---------ARR11(3)                                               -          --------->ICU4     --------->ANAC46                                                   -----         <----------DOF2<---------ICU4                                                       -------- ------TEIL  <---------YAB1  <---------ANAC55(2)                           <----------DOF2   <-------   gttcgtaacgtctttattatttataaaaatcacgcatgattttagacaaacatctaattttgttttttggtatttagctttgtatatgaaatttcttcac  12483800                                    --------->AHL20(1)                                <---------AHL20(2)   <---------YAB1                               <---------AHL20(2)  <-----------GT1   <----------DOF2      --------->ZAT6        <XXXXXXXXXXXXXXXXXXXXMIR419 ------>TEIL      --------->AHL20(2)--------->ARR11(3)                   --------->AHL20(2) ---->ANAC46      <---------AHL20(2)<---------AHL20(1)               <---------ANAC55(2) ->ZAT14  <----------DOF2      --------->AHL20(2)<----------DOF2<---------ICU4 --ZAT14---------->ID1<-----------GT1      <-----------GT1--------->YAB1 <---------AHL20(2)      <---   tgcatcttttgtctttatatttatttacactaattttatatattgtaacgtctttactattcataaaaatcacgtttaatttcaaacaaacatctgtttc  12483900                                                  <---------ANAC58                                                  <---------ANAC58                                                  <---------ANAC46                                            --------->ARR11(3)                              <--------                                         ----------->GT1                             ---------->DOF2                     <---------TOE2(3)  --------->DAG2              --------->HSFB2a(1)     ---------           <----------DOF2       ----------->GT1  <---------AtLEC2  --------->HSFC1(2)--------->DAG2        <-----------GT1 <---------ARR14(2)  --------->AHL20(1)      <---------HSFB2a(1)----------->GT1 -------DOF2         <---------TOE1(3) ---------->DOF2       <----------DOF2   ----------->GT1    <--   ttttggtattttactttgtatttgaggttccaacaaggtaataaagtatattgcatgttttgtctttagagggttccaacaaggtaataaagtatatatt  12484000                         <---------YAB1                        --------->AHL20(1)                        <---------AHL20(2)                        <---------AHL20(1)                       --------->AHL20(2)         <---------YAB1<---------AHL20(2)       --------->YAB1  --------->YAB1                                                           <----      <---------YAB1<---------ICU4                <-----------GT1           <XXXXXXXXXXXXXXXXXXXXMIR774B      --------->ICU4<--------HAHB4      ----------->GT1                    <---------ANAC58     -----      <---------ATHB12<---------YAB1    <------MYB83<---------YAB1         <---------ANAC58   <------ZmHOX2a(1) -ARR11(3)         --------->ICU4       <------MYB46(1)           --------->GLK1(2)     --------->TOE2(3) >ARR11(3)         <---------YAB1      --------->MYB59           <---------GLK1(2) <----------DOF2 --------DOF2    --------->YAB1      <---------MYB52(1) --------->YAB1 <----------DOF2  --------->YAB1   ctttaacaatgataatacatcataattatatttctctatgttaggtttatatttacaattgtatttagaatctctttacttgtgtctttatcttaaggag  12484100  Previous    Next  AGI:  At1g34250.1    Description:  transposable element gene. pseudogene, hypothetical protein Range:  from: 12483142    to: 12483612    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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