Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(s2)              xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(l2)             xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)             xxxxxxxxxxxxxxxxxxxxxx>smallRNA(i2)            <---------YAB1            xxxxxxxxxxxxxxxxxxxxxx>smallRNA(l2)           xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(i2)           xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)                              <---------AHL20(2)          <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(i2)                                --------->AHL20(2)          --------->YAB1                                                     <---------AHL20(2)          <-----------GT1                                                   <---------AHL20(2)        <xxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)                              <---------AHL20(1)         <        <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)                    <----------DOF2           --------->AHL20(1)      xxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)                <xxxxxxxxxxxxxxxxsmallRNA(i)     <---------AHL20(2)    --------->ANAC55(2)         <---------AHL20(2)   <---------AHL20(2)  --------->AHL20(1)--------->AHL20(2) ----------DOF2                --------->YAB1      --------->CCA1(2)    <---------AHL20(2)--------->AHL20(2) ------ARR11(3)           --------->AHL20(2)      <---------ARR11(3)--------->AHL20(2)    <---------AHL20(2) ----->ARR11(3) --------->YAB1--------->AHL20(2)  <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3) --------->YAB1   aactttacttaataacaattgtaaactataaaataaaaatgttttatagatagatataatttgcaaacttttatatatattaattttaaaaaataatttg  12458200                <-------GAMYB              --------->LBD16          <---------ARR14(2)             <---------ANAC46         <---------GLK1(1)             <xxxxxxxxxxxxxxxxsmallRNA(i)             xxxxxxxxxxxxxxxx>smallRNA(i)            <---------LBD16        <---------AHL20(1)       --------->ZAT14             --------->AHL20(1)       <---------ZAT14          --------->YAB1       <---------ARR14(2)       --------->AHL20(2)  --------->YAB1       --------->ARR14(2)    --------->YAB1--------->LBD16  --------->ZAT14         ----------->GT1 --------->TOE2(3)                                        --  --------->LBD16     --------->GLK1(2)--------->ARR14(2)                                        <--- --------->ANAC46     --------->ARR11(3)  --------->ANAC46            <---------AHL20(2)         ---- ---------LBD16----------->GT1 <---------YAB1---------->DOF2       ------->TEIL           --------->AHL20(2)   tctccgcagtatactgcgggttaaaatctagttataatatatatccgtaaagaacaataacacagtatgaattttttttgtaagttattcgattaaaaat  12458300                          <---------At4g35610                          --------->At4g35610                     <---------ICU4                     --------->YAB1            --------->AHL20(1)            --------->AHL20(2)            <---------AHL20(2)           --------->AHL20(2)  --------->AtMYB61           <---------AHL20(2)-------->P    --------->ANAC58<---------ATHB51                  <----------DOF2    --------->ANAC58<---------AHL20(2)                <---------DAG2                             ---- -------->DOF2   <---------AHL20(2)                <-----------GT1                        ----------- ------AHL20(2) --------->AHL20(2)              <---------ICU4                      --------->ANAC58 ----->AHL20(2) <---------AHL20(2)      --------->AHL20(2)        --------->YAB1    --------->ANAC58   taaaagaagcaaattaaattaaataatgagctaccaaaacaaataaacaaaaattacttttttgtctataaacatggagttttgccaagaaattgtaaat  12458400                                                                           <--------ATHB1                                                                           --------->AHL20(2)                                                                           <---------AHL20(2)                                                                           --------->ATHB51                                            <-----------GT1                <---------ICU4                                    <---------MYB59                  --------->YAB1                                  ------->TEIL                      <---------YAB1                                 <---------CCA1(2)  --------->HSFB2a(2) --------->YAB1           <----------DOF2     <---------ANAC46     <---------HSFB2a(2)<---------YAB1          --------------->AGL15<---------ANAC58     <---------------AGL15 --------->ICU4           --          ==========================================================MADS_MADS  <-----------GT1 ------ ------>DOF2            ---------->DOF2   <-----------GT1  ----------->GT1<---------YAB1      ------- >GT1    ----------------->AGL1<---------ANAC58<----------DOF2    ----------->GT1         ---------->DOF2   aaagtttctattccttttttgtaaacaaaagttgtgtatctaattttctcttttccataagttgtgaattgtgataataatttacaagttgacaaagaaa  12458500                                                                                                -----                                                                                              -------                                                                                             <-------                                                                                            ------>MYB46(1)                                                 <---------ANAC46                           ------>MYB83    --------->CCA1(2)                            <---------ANAC58                          --------->WOX13(1)   <---------ARR11(3)                            <---------ANAC58                  XXXXXXXXXXXXXXXXXX   --------->ARR11(3)                      <---------TOE2(3)                     <---------ALFIN1 -------->DOF2        <---------YAB1--------->ARR11(3)                          --------->ZAT14 ----- ------------------>ANAC81          <---------ARR11(3)  ---------->ID1 ------>ZmHOX2a(1) ------------ --->DOF2       --------->AHL20(2)<---------TOE2(3)   <-----------RAV1(1)       <---------ZAT14 -----   gaaaagatttaaaacaaaaaaaatgtgattgtacttaagatttcaaaggtagcgttttgttgtttctctcttcctctctctctccactggtaccaatcac  12458600      <---------TOE2(3) ---->ANAC46 -->YAB1 --ATHB12                                                                                           < XX>MIR4227                                                                                       <-- ---->ANAC58                                    *TSS                                              <-- >CBF--------->YAB1                           <----------DOF2                                    ---- ---->ANAC58                                  <---------DAG2               <----------DOF2      -----   gctccattaagaatttaagagagagagagactaaacttgagcccatcacttttgtagtgactagtgagtagagtaggcttttagagagagagagagagag  12458700           --------->ARR11(3)          --------->YAB1   <-------GAMYB                                                                             --------   --------->At4g35610                                                                     ------->GAMYB  --------->MYB55(2)                                                                      --------->ANAC58  <---------MYB46(3)                                                                      --------->ANAC58 ---------At4g35610                               ---------->DOF2                    --------->ANAC58 -------DEAR3(1)----------->RAV1(1)       <---------TOE2(3)         --------->TOE2(3)--------->ANAC46 -------RAP2.6(2) --------->ANAC46        <---------YAB1<---------HSFB2a(1)          --------->ANAC58 ----->RAP2.6(3)------->GAMYB            --------->YAB1 --------->HSFB2a(1)        ---------->DOF2 ---->CCA1(2)  --------->MYB46(3)    --------->YAB1   ---------->DOF2<----------DOF2--------->DAG2  -   acggctgttgaaagataaccacagaacacaaaaactcattcattaagaatgagaaagaaagtcccaaaaaccttttttgctctgaaaaagcaacgcaaag  12458800                     <-----------GT1                <----------DOF2                                                         --------->YAB1                <---------DAG2                                                       --------->YAB1      --------->ARR11(3) <---------ZAT14                                           <---------YAB1      <---------ARR11(3) --------->ZAT14                                           --------->ICU4  -- -->DOF2    <---------ALFIN1              <-----------GT1                       <---------YAB1     <- ---------->GT1<---------DAG2        <---------At4g35610    <----------DOF2 <-------GAMYB  ----------   ttttgaaaaatctcacacctttttcacttctctgtttgtagctgttaccacttgtgtttcccctttggcatttttctcggttgtcattaatgagagtaaa  12458900  <---------ICU4  --------->YAB1 <---------YAB1                                                    <------ZmHOX2a(2) ------->YAB1                                ---------->DOF2      <---------ARR11(3) --------ICU4                       --------->ZAT6       <----------DOF2 <---------ANAC46 ->GT1   <---------ZAT6    <----------DOF2--------->TOE2(3)       --------->ARR11(3)<---------GLK1(1)   atcatcatcaagtgtaaacttctctctctctttctctatctctatctcaaagctctcaactttggagagatcatggtttgtgtttgatttctcaagtttt  12459000                      <---------HSFB2a(2)                      --------->HSFB2a(2)                     ==============HOX2a_HOX2a                    ===============HOX2a_HOX2a                   --------->GLK1(2)                   <---------AGP1                   --------->ARR14(3)                   <---------ARR14(3)                   --------->ARR11(3)                   --------->ARR14(2)                   <---------ARR14(2)                   <---------ARR11(3)  <----------DOF2                  <------ZmHOX2a(1)    <---------DAG2      <---------At5g28300   <------ZmHOX2a(1)                   --------->DAG2      <-----------GT1------>ZmHOX2a(2)<---------ANAC58         ---------->DOF2           --------->At4g35610     <-----------GT1<------ZmHOX2a(2) <---------ANAC58    ----------->GT1                <---------At4g35610  --------------->AtSPL8   ----------->GT1              ----------->GT1    <----------DOF2 <---------   tttttttttaccctcttggaggatctgggaggagaaatttgcttttttttggtaaatggggagaaaaaagtttgaagcttttggttttgtctgcttaatc  12459100  Previous    Next  AGI:  At1g34210.1    Description:  SERK2 (SOMATIC EMBRYOGENESIS RECEPTOR-LIKE KINASE 2); kinase. similar to SERK1 (SOMATIC EMBRYOGENESIS RECEPTOR-LIKE KINASE 1), kinase [Arabidopsis thaliana] (TAIR:AT1G71830.1); similar to BAK1 (BRI1-ASSOCIATED RECEPTOR KINASE), kinase [Arabidopsis thaliana] (TAIR:AT4G33430.1); similar to ATSERK4 (SOMATIC EMBRYOGENESIS RECEPTOR-LIKE KINASE 4), protein binding / protein kinase/ transmembrane receptor protein serine/threonine kinase [Arabidopsis thaliana] (TAIR:AT2G13790.1); similar to somatic embryogenesis receptor-like kinase 1 [Solanum peruvianum] (GB:ABR18800.1); similar to somatic embryogenesis receptor kinase [Carica papaya] (GB:ABS32233.1 Range:  from: 12458648    to: 12462883    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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