Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                       <------ZmHOX2a(2)                                    <---------AGP1                         ----------->GT1                         ----------->RAV1(1)  ----------->GT1          --------->AHL20(1)                      --------->ANAC46      --------->ZAT14            --------->AHL20(2)                  --------->ANAC58  --------->ARR11(3)                 <---------AHL20(2)                  --------->ANAC58  <---------ARR11(3)              --------->YAB1                 --------->DAG2     --------->AGP1                --------->AHL20(2)             --------->YAB1        <---------CCA1(2)        --------->ANAC58       --------->YAB1 --------->ANAC58      <---------ZAT14 --------->AtLEC2      <---------YAB1  --------->ANAC58------>ZmHOX2a(2)     --------->ANAC58 ------->ETT(2) ---------->DOF2   ----------->ARR10   ---------->DOF2  <---------AHL20(1)   gtctacctataataaacataaagcaagcaacaaaattagatctttctacagtgaaataaagcatgcaaaataataaattgtaacttatgtgttaactctt  12446300                                               --------->HSFC1(2)                                     --------->ANAC46                 --------->MYB52(1)  --------->ANAC58                   <---------ANAC58                <---------SPL7       --------->ANAC58        <------ZmHOX2a(2)               <---------DAG2   --------->bZIP60(2)         <---------ARR11(3)     ---------->DOF2            --------->ANAC46            --------->ARR11(3) <---------YAB1     ---    --------->AHL20(2)        --------->ANAC46 <---------HSFC1(2) --------->DAG2   ------>ZmHOX2a(2)    <---------AHL20(2)<------ZmHOX2a(2)   <---------------------WRI1    <---------ANAC58   <---------CCA1(2)   gaacatttaaagacataccttacgatcaatagccacaacacgacatcgaagcttagatggaagatcaaaaattggcctgatatgatccaattcatctctt  12446400                                                    --------->ANAC58                                                    --------->ANAC58                 --------->ZAT2                                                <---------HSFB2a(2)                 xxxxxxxxxxxxxxxxx                                                --------->HSFB2a(2)   --------->AHL20(2)                --------->DAG2              ------>MYB83             --------->AHL20(1)               ---------->DOF2              ------>MYB46(1)          <---------AHL20(1)       -------  <---------GLK1(1)                      ----------------->AGL1     --------->AHL20(2)        <------ ------>HSFB2a(2)        --------->YAB1  ----------------->AG---------->DOF2 xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)   gtagaattctcaatctgaaaagtgccatcaaaatgtttcaaaaaccaaatcgagaagcaaaacaaaagaaatatatatagactcacgagctcgatgtgcc  12446500                <----------DOF2          --------->ANAC58                <---------DAG2           --------->ANAC46      --------->ANAC58         <---------HSFB2a(2)      --------->ANAC58         --------->HSFB2a(2)      ----------->GT1          <---------ANAC46    ---------->DOF2           <---------LBD16   <------ZmHOX2a(1)        --------->ARR14(2) <---------TOE2(3)       --------->LBD16 --------->ANAC58 xxxxx>smallRNA(fl3)    <-----------RAV1(2) ---------->DOF2         <---------ICU4 -->ZAT18      <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)  <---------At4g35610 ---ZAT18    <-----------GT1<---------ARR14(2)    <-------TEIL      --------->ATHB51   cttgaggaaagtaataaactttttctccaggtttcggaagaacacacaaaggtccagcacatatgttccataatttctcatacatataagtcttggttat  12446600                                                                                    <---------ICU4                                                                                  --------->ARR11(3)                                                                                  --------->GLK1(2)                                                                                  <---------ARR11(3)                                                                                 --------->CCA1(1)                                                                                 --------->RVE1(1)                      --------->ARR11(3)                                       --------->AHL20(2)                      --------->AHL20(1)    --------->AHL20(1)           <---------AHL20(2)           --------->ANAC58                 <---------AHL20(1)       --------->AHL20(2)           --------->ANAC46  <---------MYB46(3) --------->AHL20(2)  <---------AHL20(1)           --------->ANAC58 <--------P  <---------AHL20(2)          --------->AHL20(1)    ----------->GT1  --------->AHL20(2)--------->AHL20(2)          --------->AHL20(2)<----------DOF2<   atcaactagtaaaacgaaacaaaatatatggttgtttcatatttaatatataaaataagttcagacaaaatatatataaaaaaaaatctttacttatgcc  12446700                                                                              --------->ANAC58  -----                                                         <------ZmHOX2a(2)    --------->ANAC58  -----                                                        <---------ARR11(3)   --------->DAG2     <----                                                        --------->ARR11(3)  ---------->DOF2 ---------             --------->ZAT14 --------->ATHB51<---------YAB1       <---------ANAC46--------->ANAC58             <---------ZAT18<---------MYB52(1)      ---------->DOF2      --------->YAB1  --------->YAB1 ---------YAB1   <-------TEIL--------->AHL20(2)<------------CBF--------->GLK1(2)  --------->ANAC58 <-   tgataattcaggctgtgcattcatttctccattattttccatgagctcttattgcaaagatcgatattctgtgaatcataaagcaagaaaatcatcaaaa  12446800                               <------ZmHOX2a(1)                       <------------CBF                 <---------ZAT18             <---------------AtSPL8 ---->GLK1(2)--------->ZAT6   ----------->GT1----------->GT1             <----------DOF2 ---->ARR11(3)   --------->ZAT18            --------->DAG2            <---------ARR11(3) -----ARR11(3)   <---------ZAT14           ---------->DOF2            --------->ARR11(3) >YAB1       --------------->AtSPL8   ----------->GT1                <---------CCA1(2) ---------DOF2   --------->ZAT14   ---------->DOF2--------->ICU4   --------->AHL20(2)   tctttttttttgttaagagtacacttattgacaggataaaagataaaaagtaatttttgtaatagaaaattatatctttccatcacaaatgagaagaaat  12446900                                                                                                  ---                                                                                                <----                                                                                                -----                                                                                               <-----                                                                                               ------                                                                                               ------                                                                                              -------                                                                                              -------                                                                                              -------                                  --------->ATHB12               <---------AHL20(2)           <------                                 <---------YAB1                  --------->AHL20(2)           -------                              <---------ARR14(2)    <---------AHL20(2)    --------->AtLEC2    <------                   <---------AHL20(2)   <---------ANAC46   <---------TOE2(3)                  <------            <-----------GT1   --------->ARR14(2)    --------->AHL20(2)   --------->ANAC46   ---------   tactacaaactattaaactattttaaaaatcgtatatgatttgagtgaaaaaatttaaattagggattaaaataccaggcagactatttttctctagatc  12447000       <---------ATHB12      ------>MYB83      ------>MYB46(1)     --------->WOX13(1)   ------------>CBF ------>LBD16 -----LBD16 ->ZmHOX2a(2) -ZmHOX2a(2) --->ARR14(1) --->CCA1(2) -->ARR11(3) -->ARR11(1) -->ARR14(2)           --------->AHL20(2) ---AGP1           --------->AHL20(2)                                           --------->ICU4 -->AGP1--------->YAB1 <---------AHL20(2)                                      <---------MYB59     -- ---ARR11(3)       <---------AHL20(2)                          <---------AHL20(2)             ------- ---ARR14(2)      --------->ICU4 --------->ALFIN1           ------->TEIL     --------->ARR11(3)   --- -->ARR10    ----------->GT1   <---------ANAC46     --------->YAB1           <---------ARR11(3)   <--   cggctaccaatcacagagtaattttttaatttgatgtgtagttgatgtatacaataagcatgtatttatagagaattaagaccttattaagtcaccaaaa  12447100                                      <---------TOE2(3)                            ---------->DOF2          --------->DAG2            <---------AHL20(2)                         <---------WRKY12   --------->YAB1               <---------ARR11(3)                             <---------WRKY38(1)   --------->ANAC55(2)        --------->ANAC58                               --------->At5g28300   --------->ANAC46           --------->ANAC58                 ------>MYB83  <--------ZAP1--------->MYB52(1)  <-------TEIL -------->P --------->ANAC46                     ------>MYB46(1) <---------WRKY45 ------->CCA1(2)          --------->ANAC58                   --------->TOE1(2)--------->WRKY18(1) --->DOF2---------->DOF2  --------->ANAC55(1)                <---------MYB111(1)---------->DOF2     < ------>ARR11(3)          --------->ANAC58------->TEIL       <---------MYB59 <-----------HVH21 <----- -------ARR11(3) --------->YAB1 --------->AHL20(2)         ------->TEIL  <---------ALFIN1 -----------   gatatacataataaagctaccatattacacgcaagaaattaatgtattttgggaaattaagaacctactaaaactccacggtcaaagaagcccaacagtt  12447200  Previous    Next  AGI:  At1g34170.1    Description:  ARF13 (AUXIN RESPONSE FACTOR 13); transcription factor. Identical to Auxin response factor 13 (ARF13) [Arabidopsis Thaliana] (GB:Q9FX25;GB:Q5IRM9;GB:Q5IRX4;GB:Q9XIC3); similar to ARF22 (AUXIN RESPONSE FACTOR 22), transcription factor [Arabidopsis thaliana] (TAIR:AT1G34390.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO69513.1); contains InterPro domain Transcriptional factor B3; (InterPro:IPR003340); contains InterPro domain Auxin response factor; (InterPro:IPR010525) Range:  from: 12443525    to: 12446742    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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