Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100              <---------ANAC46            <---------YAB1            <---------ANAC55(2)        --------->AHL20(1)      <---------AHL20(2)      --------->AHL20(2)      --------->AHL20(1)      <---------AHL20(1)   --------->AHL20(2)                     <---------AHL20(2) ---->AHL20(2)                           --------->AHL20(2) -----AHL20(2)                           <---------AHL20(2) ---->AHL20(1)                         --------->TOE2(3) -----AHL20(1)               --------->ZAT6                                                       <-- ----AHL20(2)               --------->ZAT18       <----------DOF2                              ------ --->AHL20(2)      --------->ICU4    --------->ICU4              ----------->GT1               <-----   aattttaaaatattatgtataagtattaagaacactataaatattaattagactttcacttgtaatcttgtaacttaaaaatagtacatgggtcgattat  12441000                                 --------->DAG2                                ---------->DOF2                              <---------AHL20(2)                              --------->YAB1                              --------->AHL20(2)                     --------->AHL20(1)                                         ------------>CBF                     <---------AHL20(1)                                  ------------>CBF                 <---------AHL20(2)                                    >>>>>>>>>>WRKY26                <---------AHL20(1)                                  --------->At4g35610         ----------->GT1   --------->YAB1                           <---------At4g35610             <        <---------MYB46(3)<---------AHL20(2)                        <-------GAMYB                   <       --------->ALFIN1  --------->AHL20(2)                        --------->MYB52(2)               < --------DOF2   --------->AHL20(1)                     <<<<<<<<<<<<<<<<<LFY   --------->YAB1        < --->ARR11(3)   --------->AHL20(2)                  <---------ICU4<-----------RAV1(2)    <---------MYB52(1) ----ARR11(3)   <---------AHL20(2)     <---------TOE1(3)        <-----------HVH21      <-----------RAV1(1)   ctttttgggatgggtcaatttaatatttttaataaaaagttaagctatttttaaaaattccattggggtcagttgatcaatagtcaatactgttgggaac  12441100                                                                  <---------ANAC58                                 ----------->GT1                  <---------ANAC46                                --------->HSFB2a(2)               <---------ANAC58            <---------ALFIN1    <---------HSFB2a(2)               <---------ANAC55(1)          <---------ALFIN1      >>>>>>>ZML2 --------->YAB1        <------MYB46(1)         --------->ZAT18   <---------MYB46(3)  --------->AHL20(2) <------MYB83 ----------->HVH21         <---------ZAT18  <--------P       <---------YAB1        --------->MYB59 ---------ANAC58       <---------TOE2(3) --------->YAB1          --------->MYB111(1)----------->GT1 ---------ANAC55(1)    <---------TOE1(3)----------->GT1  ----------->GT1   --------->AHL20(2) ---------ANAC58       <---------YAB1 <------------CBF  <---------TOE2(3)  <---------AHL20(2)     --- ---------ANAC46     <---------ICU4 <---------AHL20(2)---------->DOF2    <-----------TBP          ---   ttacgtctaagcccacacttccattatggttgttctagtaaattgataataaactataaaggtaaattaggtgtgatttatatgaccagtgaaaaatttc  12441200     --------->DOF5.7(2)    --------->TOE1(3)    --------->TOE2(3)   ----------->GT1  <---------TOE1(3)  <---------TOE2(3) <---------DOF5.7(2)                            --------->AtLEC2 ------>TOE1(3)                        --------->ATHB12             <<<<<<<<<<MYB80            ------ ------>TOE2(3)                       <---------YAB1       <-------TEIL                  <----------ID1   ccttaacgttaaatatgtgttgtcaagaatgttaagaaacatgaatggccatgaaaactgattcatttttggtttgatttcggtttaaaaaaaaacaaaa  12441300                                                          --------->LBD16                                                          <-----------HVH21                                                         --------->bZIP60(2)                                                         --------->O2                                                     ------>NtERF2                                                   --------->ATERF1(1)                                                  <---------ZAT18     ------------>CBF                             --------->ZAT14    --------->ANAC58                           <---------ANAC58    --------->ANAC46        <---------ANAC46   <------MYB83 <---------WRKY12    --------->ANAC58        <---------ANAC58   <---------ANAC58   --------->WOX13(1)       <---------ANAC58   <------MYB46(1)         <---------ANAC46  ---------->DOF2        <---------GLK1(2)    <-----------RAV1(1)      <---------ANAC58 <---------ATHB12    ------>MYB46(1) ----------->GT1 <---------At4g35610 <------ZmHOX2a(2)   ------>MYB83  <---------LBD16<---------At4g35610  <---------ANAC58     <-------- --->MYB52(1)       --------->MYB52(1)   <---------AHL20(2)------------>CBF      <---------AtLEC2   ccgatcaagcaatcccttataccaactgattcgtgagcccggtttaatttggtgcagccccgtcaatggaatggctcgtgtttacatggagacgatgata  12441400                                                       <------NtERF2                                                      --------->LBD16                                                      --------->ORA47(1)                                                      ------>NtERF2                                                     --------->RAP2.6(2)                                                     --------->ATERF1(2)                                                     --------->DEAR3(1)                                                     <---------ATERF1(2)                                                    --------->ORA47(2)                                                    --------->DEAR4(2)           <---------GLK1(2)                        --------->ATERF1(1)          <---------ZAT2                           ------>NtERF2          <---------At4g35610                      <---------ATERF1(1)          --------->At4g35610                      --------->ABI4(1)                           ------       --------->TGA2(2)                          --------->DEAR3(1)                       <---------HSFB2a(2)      <-----------TGA1                           --------->MYB46(3)                        --------->HSFB2a(2)     <---------ANAC58                            --------->DEAR3(2)             <---------MYB52(1)  -     <---------ANAC58 <---------ATHB12         <---------ALFIN1         <----------DOF2    --------->HSFC1(1) -YAB1<-----------HVH21                       ------>ZmHOX2a(1)   <---------ATHB12         <---------HSFC1(1)   caaaaatgcgtcagcttctcccaaatcaaacaactccaatctcacttcctcaccgccggccatttccaatcttcctttctccgttctcgtcttctcgaac  12441500                                                                            <---------WOX13(1)                                                                          <------------ATHB5                                                                          -------->ATHB1                                                                          --------->ATHB12                                                                          <---------ICU4         <---                                                   --------->SPL7         <--------ATHB1         ----                                                   <-------TEIL           --------->YAB1         <---                                                --------->LBD16          <---------ATHB51      ------                                   <---------SPL7<---------MYB52(1)      <---------YAB1      --------                                  --------->DEAR3(1)                     <---------ATHB12    <-------                                 --------------->AtSPL8                  --------->ICU4    <---------LBD16  <---------ZAT18                --------------->AtSPL3         <----------DOF2      --------->WOX13(1) --------->ANAC58    <---------ARR11(3)        <---------HSFB2a(2)    ------------>ATHB5--------->YAB1 --------->ANAC58    --------->ARR11(3)        --------->HSFB2a(2)   --------->MYB46(3)<---------ATHB12 --->SPL7<-----------GT1<----------DOF2       <---------LBD16  --------->TOE1(3)  --------->ANAC58 ----->NtERF2       --------->GLK1(1)        <-----------GT1   --------->TOE2(3)  --------->ANAC58   gctgcgcaatctcaccattcggagacctttccttcgccgtacaaattttccggtacatccctaaacctttaaccaatgattggaacgcaatcatccgcgg  12441600       --------->HSFB2a(1)     <------NtERF2     <---------MYB52(1)    --------->LBD16       <---------ANAC46  <---------LBD16         <---------ANAC58                                 <----------DOF2 ------GLK1(2)            <---------ANAC58                              ------>NtERF2 ----->ARR14(2)   ------>ZmHOX2a(1)                                     <---------DEAR3(2) ------ARR14(2)   <-----------HVH21            <-----------RAV1(1)     <---------DEAR3(1)         <-- --->LBD16       --------->TOE2(3)      <---------ANAC58             <-----------HVH21            <-- ->LBD16 <---------ARR11(3)             <---------ANAC58       <-----------TGA1              <------- --LBD16 --------->ARR11(3)     <---------AtLEC2      <---------At4g35610<------NtERF2       ========   attcgccggaagttctcatccttcacttgcgttttcatggtatcgttccatgttgcagcaatcttcgtcatcgtcggctatatgtagagtcgatgctttg  12441700                                  <----------DOF2                              <---------ZAT18                            <-------MYC3                            <-------MYC4                            ------->MYC4                            <-------PIF5                            ------->PIF5                            ------->MYC2                            ------->PIF4                            <-------MYC2                                              --------->ARR14(2)                            ------->MYC3                                              <---------ARR14(2)                            <-------PIF4                                            <---------KAN4(2)                           --------->TGA1a                                      <------NtERF2                           ==================bZIP_DOF                         <---------DEAR3(1)                           <---------TGA1a                                    <---------ANAC46                          ------------>OsbHLH66                              <---------MYB52(1)                          ------->TEIL                                      <-----------HVH21                         <------------OsbHLH66                             ------->GAMYB                        <---------ZAT18                                   <------------AtMYB77      <     ================================bZIP_DOF                             --------->MYB46(3)  -------     <----------DOF2    --------->ZAT18                                  <---------At5g28300  <------  ---------->ID1   <---------ANAC58                                     <-----------GT1       <------ -------ANAC58     <---------ANAC58                                 --------->At4g35610   --------->LBD16 -------ANAC58 ======================bZIP_DOF                       <---------At4g35610   <---------At4g35610 ---DOF2       ---------->DOF2--------->ZAT18                   <-----------HVH21   ---------->TaMYB80 ====================================bZIP_DOF        <------ZmHOX2a(2)  --------->MYB52(1)--------->At4g35610   acttgttcttttactcttaaagcttgtgcacgtgcgctttgttcttccgctatggatcaacttcattgtcagattaaccgtcggggattatccgctgatt  12441800                        <---------ANAC58                                                        <----                        <---------ANAC58                                                        <----                 <---------ANAC46                     <---------ANAC58                       <-------    --------------->AtSPL8  --------->ZAT6            <---------ANAC46                  <-----------RAV1(1)   <----------DOF2<---------WOX13(1)             <---------ICU4                         <---------REM1(1) ----------DOF2  <---------ANAC58            <---------AHL20(2)                        --------->ARR11(3) -->ARR14(2)     <---------ANAC58            --------->AHL20(2)                 <-----------HVH21 ---GLK1(2)     <---------MYB46(3)          --------->AHL20(2)               <---------ANAC58<------- ---ARR14(2)  <---------MYB52(1)   --------->MYB52(1) <---------ANAC58       <---------ANAC58<-------   cgcttctttgtactacgttgcttgatgcttactctaaaaacggagatttaattagtgcgtataagttgttcgatgaaatgcctgtgagagatgttgcgtc  12441900  Previous    Next  AGI:  At1g34160.1    Description:  pentatricopeptide (PPR) repeat-containing protein. similar to unknown protein [Arabidopsis thaliana] (TAIR:AT4G21065.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO67549.1); contains InterPro domain Pentatricopeptide repeat (InterPro:IPR002885) Range:  from: 12441371    to: 12443234    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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