Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                       xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)                     xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)                     xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(l2)                     xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(i2)                    <---------------AtSPL8                 <----------DOF2                 <xxxxxxxxxxxxxxxxsmallRNA(s)               xxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)              <---------ANAC46  xxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)             xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)             xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)            xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)            xxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)            xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)            xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(s2)            xxxxxxxxxxxxxxxxxxxx>smallRNA(si3)           xxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)           xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)           xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)          xxxxxxxxxxxxxxxxxxxxxx>smallRNA(i2)          xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(i2)          xxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)         xxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)         xxxxxxxxxxxxxxxxxxxx>smallRNA(si3)         xxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)         xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)         xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(i2)         xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)         xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)         <---------ANAC58       xxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)         <---------ANAC58       xxxxxxxxxxxxxxxx>smallRNA(i)        xxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)       xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)       xxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)       xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(i2)       xxxxxxxxxxxxxxxxxxxxxx>smallRNA(i2)       xxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)       xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)       xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)       xxxxxxxxxxxxxxxxxxxx>smallRNA(le3)       xxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)       xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)      xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)      xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(l2)      xxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)      xxxxxxxxxxxxxxxx>smallRNA(i)      xxxxxxxxxxxxxxxxxxxxxx>smallRNA(i2)      xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)      xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)      xxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)     xxxxxxxxxxxxxxxx>smallRNA(i)     xxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)   xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)   xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)  xxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)  xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)    <------ZmHOX2a(2) ----------->HVH21 xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3) ---->ZmHOX2a(1) <xxxxxxxxxxxxxxxxsmallRNA(i)--------->KAN4(2)                   ---------->DOF2 ---GT1xxxxxxxxxxxxxxxxxxxx>smallRNA(si3)  <---------ATHB12                <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3) -DOF5.7(2)xxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3) <-----------------AGL3 <-----------GT1--------->ZAT18   cctctcacagtgagtgccggtttaagtacaacgatgaataatgcgatcattctatatatgagaaattgttttttttctgtataaaaagagcacaaattgt  12435500                                                                   <----------DOF2                                                             <---------AHL20(1)                                                             --------->AHL20(1)                                                             <---------ARR11(3)                                    --------->AHL20(2)       --------->ARR11(3)                                <---------AHL20(2)         <---------AHL20(2)                                --------->AHL20(2)         <---------AHL20(1)                      --                        --------->ANAC58                   --------->AHL20(1)                     ---                        --------->ANAC58        --------->DAG2  <---------AHL20(2)         ------->MYC3               ---------->DOF2  --------->AHL20(1)      <---------AHL20(2)                 <-------MYC3             <---------AHL20(2)--------->AHL20(2)       --------->AHL20(2)             --------->ZAT18 <----------DOF2        --------->ANAC46       ---------->DOF2  <-----------GT1        <---------ZAT18   tttctttttgtatatataaaagagacacacaaaaaaaattatacatacaaaaagagaataaaatattttcttttcaaaatttgtcttagggcacatgaaa  12435600                                               --------->YAB1                                         <---------MYB52(1)                                        <-------GAMYB                               <---------ARR14(2)                    <---------TGA1a     <-----------HVH21                    --------->TGA1a  --------->SPL7             <---------At4g35610   <---------SPL7                                         <------MYB46(1)             --------->At4g35610 <---------------AtSPL3                                   -----------      xxxxxxxxxxxxxxxx>smallRNA(i)<---------ANAC58                                        <------MYB83      <---------------AtSPL8   <---------GLK1(2)                                  <-----------------AG      <---------------AtSPL3   --------->ARR14(2)<---------YAB1                 <---------WRKY12    <---------At4g35610    <---------At4g35610<------ZmHOX2a(2)                --------->DOF5.7(2)    --------->ZAT2  <---------O2 --------------->AtSPL3  <---------AHL20(2)  ------>ZmHOX2a(2)    --------->At4g35610   ----------->RAV1(1)<---------ARR11(3)            <---------ARR14(2)    <---------ZAT2  --------->O2 <-------TEIL--------->ARR11(3)            <---------ARR11(3)       - ------->CCA1(2)    ============================MYC_MYB<---------AHL20(2)  --------->ARR14(2)     --- ------>AHL20(1)  <---------ALFIN1<---------ANAC58     --------->AHL20(2)  --------->ARR11(3)    <---   tatatgagctggtactgctcacacttggcaacagattcgtaccgttagatcataaatataaatttgaaacatatgtagatcgtcaacttatttggttaaa  12435700                                                                                              <------                                                                       ------>ZmHOX2a(2)  <----------DOF2                                                                       ----------->GT1  <---------YAB1                                                                     <---------ARR11(3)<---------ARR11(3)    --------->YAB1                                                   --------->ARR11(3)--------->ARR11(3) <---------AHL20(2)                                        --------->AHL20(2)        <---------YAB1 >GT1  <-----------GT1 --------->YAB1                      <---------AHL20(2)      <---------ICU4 -------->AHL20(2) <---------YAB1                         --------->AHL20(2)      <---------YAB1 ------>TOE2(3)----------->GT1            <---------AHL20(2)   <---------AHL20(2) --------->ICU4 ------ICU4  ---------->DOF2              --------->AHL20(2)  --------->AHL20(2) --------->TOE2(3)   cattaattttaactacaaagtataatcgtaaacttgttttgtattttattcaattcagaaattaataaatagatcgtcaaaaacattattatctttaaga  12435800                                               --------->YAB1             --------->TOE2(2)               --------->ZAT14             --------->TOE1(2)               <---------ZAT14--------->AHL20(2)          --------->AHL20(2)        <---------YAB1        ----------->GT1                          <- ---TOE2(3) xxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)          <---------ANAC55(2)                    ----   aaaaaaaaacaataacataagagggttttcagagaaatatgaataactatagtgactaatatgtaaatagagaaacatatgtagactcttgactaatccc  12435900                                                             ------->TEIL   --------->DEAR3(1)                           ---------->ID1                    --------->GLK1(2)                   --------->LBD16                           <---------ARR14(2)                   <------NtERF2                             --------->ARR14(2)    <---------MYB52(1)                   ------>NtERF2                         <------NtERF2     --------->ATERF1(1)                  --------->DEAR3(1)                    ------>NtERF2      --------->DEAR4(2)                 <------NtERF2  *TSS                    <-----------HVH21  --------->RAP2.3(1)                 --------->ATERF1(1)                   <---------DEAR3(1)  <------NtERF2                <---------ATERF1(1)                    --------->DEAR3(1) <---------ATERF1(1)       -                ------>NtERF2   <-----------HVH21      <---------ANAC46   <---------RAP2.3(1)       <               --------->DEAR3(1)                   ------->GAMYB         ------>NtERF2             <               <---------DEAR3(1) <---------MYB46(3)--------->DEAR3(1)   <---------DEAR3(1)        --            ----------->HVH21 <------NtERF2 <----------DOF2 <---------CCA1(2)------>NtERF2       ----    <---------GLK1(2)<----------DOF2 --------->WRKY12 --------->RAP2.3(1)--------->DEAR3(1)     <---- --------ALFIN1--------->ANAC46--------->ANAC46    --------->MYB46(3) <---------ANAC58        <------ ------->RAV1(1)<---------RAP2.3(1)<-------GAMYB   --------->DEAR3(2) <---------ANAC58    <----------DOF2   aacacagtttctcttcgacgccgcgttttgtccccgtcgttgaactcttttcaaccggcgtcgaatctcgtttcgtcgccgtctcgttggctcttttcac  12436000                                                                                                   <-                                                                                               <-----                                                                                              <------NtERF2                                                                                              -------                                                                                             <-------                                                                                             <-------                                                                                             ------>NtERF2                                                                                             <-------                                                                                             <-------                            <---------ANAC58                                                 <-------                       <------NtERF2                                                        <--------                      <---------RAP2.6(3)                                                   ---------                      ------>NtERF2                                                         <--------                     --------->DEAR3(1)                                                     <--------                     --------->ANAC46                                                       <--------      --------->ARR14(2)    <---------ANAC46                                                ---------      <---------ARR14(2)    <---------ANAC58                                               <---------ABI4(1)      ------->TEIL   --------->RAP2.3(3)                                                   <------NtERF2      --------->GLK1(2)<---------MYB52(1)                                             <------ZmHOX2a(2)     <---------CCA1(2)<-----------HVH21                                              --------->ARR14(2)  <------NtERF2     --------->RAP2.3(1)                                         --------->GLK1(2) --- ------>NtERF2      --------->ATERF1(1)                                         --------->ARR14(2)--- <-----------HVH21  <------NtERF2--------->ARR14(2)                             <---------ARR14(2)--- -------->DEAR3(1) <---------RAP2.3(1)                                    --------->ANAC58 --------->ATERF1(1) ---------ANAC46   ------>NtERF2 ------->TEIL                             --------->ANAC46------>NtERF2 ---------DEAR3(1) <---------ATERF1(1)                                  ------>NtERF2<---------ARR14(2) ------->RAP2.3(1)--------->DEAR3(1)                                   --------->DEAR3(1) <---------ATERF1(1) ----->DEAR3(1)   <---------DEAR3(1)                                   --------->ANAC46  <---------LBD16 -----LBD16    <---------ANAC58  <---------ARR14(2)        --------->YAB1 --------->ANAC58--------->LBD16 -----GT1      <---------ANAC58 <---------CCA1(2)         <-------TEIL ----------->HVH21<---------LBD16   cggcgtcgaatctcgtttcgtcgccgtcattcgtgtatccatcttaaaattcgaggctgattcatgactatctccgacgcaaaatccgatcccggcggcg  12436100 --------WRKY18(1) ----DEAR3(1) -->ATERF1(1) --ORA47(2) --RAP2.3(1) --ERF1--------->GLK1(2)                                                --------->SPL1(1) --ATERF1(1)                                                            <---------SPL1(1) --DEAR4(2)                                              <---------TOE2(3) -RAP2.3(2)                                              <---------TOE1(3) >ATERF1(2)                                          <-----------HVH21 <---------SPL1(2) -RAP2.3(3)                                    --------->ARR14(2)      <---------SPL7 -ATERF1(2)                                    <---------ARR14(2)<-----------ARR10 -DEAR3(1)                                   --------->LBD16     <---------ARR11(3) >DEAR3(1)                                  --------->ANAC55(2)  --------->ARR11(3) ------>WRKY12                             <---------LBD16----------->GT1--------->SPL7 -------->HVH21               --------->AGP1--------->ANAC46    --------->RVE1(1)   <---------At4g35610 ------>WRKY38(1)   ---------->DOF2 <---------ZAT6  <---------ANAC46 --------------->AtSPL3   atgaccgagactctgaaatcgccaaagaaacagaactagtgtttctccgtaatcgcgtcaaggtaaaaatctccgtacgacttgtcatcttcttagcttc  12436200                                                                                        <---------TOE2(3)                                                                                        <---------TOE1(3)                                                                                      ---------->DOF2                                       --------->MYB52(2)                           <----------DOF2                                     <---------MYB52(1)                            <---------ANAC58         <---------ZAT14         --------->ZAT18                                   <---------ANAC46         --------->ZAT14         <---------ZAT18          --------->MYB52(2)       <---------ANAC58   ttcaacgtctctgtagtctcttcgctcaatgtttgtgcccttcgttgttaagcattttgttagtggaacgattcgattacacattgcttaaaggttgagt  12436300                                                            <---------WOX13(1)                                                           <---------ANAC58               <----------                              ------>ZmHOX2a(1)       <---------MYB46(3)               --------->YAB1                    <---------MYB52(1)  <---------MYB52(1) <---------ANAC58      <---------ARR11(3)                   <-------GAMYB       --------->TOE1(3)  --------->ATHB12       --------->ARR11(3)                  ----------->GT1      --------->TOE2(3) <---------YAB1         <---------CCA1(2)            ------->TEIL    ----------->RAV1(2)  <---------ZAT14         <---------MYB46(3)  <------ZmHOX2a(1)   ttgaaactatgttgaatcttcggttaattctcctgtagaaacgttagatagtgaagttgttgattgtttcattgtttgttctatatctctcatcaggagt  12436400  Previous    Next  AGI:  At1g34150.1    Description:  tRNA pseudouridine synthase family protein. similar to tRNA pseudouridine synthase family protein [Arabidopsis thaliana] (TAIR:AT3G06950.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO67545.1); contains InterPro domain tRNA pseudouridine synthase; (InterPro:IPR001406) Range:  from: 12435932    to: 12439477    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
	printer-friendly version