Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100   <------NtERF2 --->NtERF2 ----NtERF2 -->NtERF2 ------ATERF1(1) ----->DEAR3(1)                                                     --------->ANAC46 --->LBD16                                                         <---------ZAT18 ----LBD16<---------HSFC1(1)              -------->P              --------->DEAR3(1) --->At4g35610                     <---------HSFB2a(2)          --------->ABI4(1) >GAMYB   --------->HSFB2a(2) --------->HSFC1(2)               --------->DEAR3(1) ->MYB46(3)                   <---------HSFC1(2)               --------->AtMYB61 -----AtMYB77                 <---------HSFB2a(1)              <---------ALFIN1              -------- -At5g28300      --------->ZAT18   --------->HSFB2a(2)        --------->MYB46(3)           --------->LBD16 >HVH21   <---------HSFB2a(2) --------->HSFB2a(1)     <----------DOF2                <---------ALFIN1 ---OsCBT --------->HSFC1(1) ------->TEIL<-----------GT1 --------->YAB1           --------->LBD16   ggcctcagccttctcgaagttcacaaacccgaaccttctagacttaccttctccatctttcatcaccaccgcgctagttatctccccaaactccccaaag  12434300                                                                                          <---------TOE2(3)                                                                                   <---------LBD16                                                       <---------ZAT6             <---------ALFIN1                                                  --------->TOE2(3)           ----------->HVH21                  <-----------HVH21              <---------ICU4               --------->WRKY38(1)                 --------->ANAC46           --------->TOE2(3)                 --------->WRKY12            --------->At4g35610            --------->YAB1              <-----------GT1   --------->MYB52(1) -->DOF2  --------->YAB1                  >>>>>>>>>MYB98        --------->LBD16<---------WRKY18(1)   agcctcttcaaatcagcatccgtcgcagtctccaccaagtttttaacataaacattagtgaaaacccgagatttatcccattgaccacggctaacgaatg  12434400                             --------->ZAT18                     --------->LBD16                    <---------ANAC58                    <---------ANAC46                     <---------ZAT14                   <---------LBD16                     --------->ZAT14                <---------ANAC58                       --------->REM1(2)                <---------ANAC58                      --------->ALFIN1                           ----               --------->ATHB12                       <---------REM1(1)                      --------              <---------YAB1<---------ANAC58          <---------ANAC46                       <-------          --------->ARR11(3)<---------ANAC58        <---------ANAC46                         <-------        ------->TEIL<---------ANAC58           <---------ANAC58    <---------ARR11(3)       <--------   --------->YAB1<---------WOX13(1)            <---------ANAC58---------->DOF2         ------->TEIL   gacaaacatgaatatgttgattgcggatgagcgtgccattgtgaaaattgcatgcggtgtagactgaaaggtctgagtaaaactggacgaacccatatcc  12434500                        <---------ALFIN1                     --------->ANAC46        --------->HSFB2a(2)                                                              <---------GLK1(2)        <---------HSFB2a(2)<----------DOF2     <---------------AGL15                     --------->ARR11(1) -->ZmHOX2a(1)       --------->ANAC58         ----------------->AGL1               <---------ETT(2) ->ARR14(2)          --------->ANAC58         ----------------->AG         <---------ANAC58 --ARR11(3)   --------->YAB1              <----------DOF2                  <---------ANAC46         - --ARR14(2) --------->ANAC58           <---------ARR11(3)                  <---------ANAC58<-------TEIL -CCA1(2)   --------->ANAC58           --------->ARR11(3)           ---------->DOF2--------->ETT(2)<-   tttggaaactccagaagcatcacgagccactttgcaagagagaactttgccaaatgcagagaacatatcgcaaagttgcttgttgtcgatagattcgtct  12434600                            <---------ATHB12                        <---------ZAT18                        --------->ZAT18               --------->DOF5.7(2)              <-----------HVH21              <------ZmHOX2a(2)         <---------TOE2(2)      <------             --------->ANAC55(2)             =============================HOX2a_HOX2a         <------             --------->ANAC46               --------->ARR11(3)         <---------TOE1(2)      -------             --------->ANAC58              <------ZmHOX2a(1)       <---------YAB1             <------             --------->ANAC55(1)       <---------ANAC58            ------>ZmHOX2a(1)         <-------             <---------ANAC55(2)   <-------GAMYB     --------->HSFB2a(2)                     <-------             --------->ANAC58     <-----------RAV1(1)<---------HSFB2a(2)                     -------- -------->GLK1(2)    --------->TOE1(1) <---------ANAC46           --------->TOE2(3)        --------->YAB1 --------GLK1(2)     --------->TOE2(1) <---------ANAC58     --------->TOE2(3)    <----------DOF2    <   agattcttgacaaacacgttacctcgtccactcattctgttgctaggatcacgttctgaaaacattatcctcataggttttccctttaacttacaataat  12434700                                               <---------AHL20(2)                                               --------->AHL20(2)                                              <---------AHL20(2) <---------ALFIN1                             --------->AHL20(2) ------ATHB5                               --------->AHL20(2) <---------YAB1 ---ICU4                                  <---------AHL20(2)  <---------TOE2(3) -->ATHB51                            --------->AHL20(2)     <-----------GT1 ======================== --ATHB1                          --------->ANAC58         <---------ATHB12  <---------DOF5.7(2) --ATHB51  <---------ZAT14        --------->ANAC46       --------->WOX13(1)  ---------->DOF2 --ATHB12  --------->ZAT14       --------->LBD16--------->WOX13(1)         --------->DOF5.7(2)   <--- ->ICU4 --------------------->WRI1--------->ANAC58     ------------>CBF <-------TEIL             ---- ---------At4g35610        <-----------GT1--------->AHL20(2)--------->YAB1--------->TOE2(3) ---------   tcagcacctccattgcagtcttcgctgtttttccccacgaaaaaataaataaatcaaaccaattaacattcaaattcgttaaagaaaaatcgacataatt  12434800                                                                            <------------CBF                                                                           --------->YAB1                      <---------MYB59                                      <---------ICU4                 --------->ALFIN1                                          --------->ATHB12                ------->MYC3                                               --------->ATHB51                ------->MYC4                                               <------------ATHB5                <-------MYC2                                               <--------ATHB1                ------->MYC2                                               -------->ATHB1                <-------MYC4                                              <---------YAB1                <-------MYC3                                              --------->ICU4               ==============================================bZIP_DOF     <---------ATHB12               --------->ANAC55(2)                                      --------->WOX13(1)               --------->O2                                            --------->MYB46(3)           - ========================bZIP_DOF                                      ------------>ATHB5           - ------AHL20(2)<---------O2 --------->YAB1                  <---------TOE2(3)   ---------->DOF2     - ----->AHL20(2)--------->TGA1a                     --------->DAG2     <---------KAN4(2)         ----- >ICU4         <---------TGA1a--------->ZAT6      ---------->DOF2     ------------>CBF         ------   taaatcgaaacaaatacacgtgtgcctaaataatactaacaaaaaaaaactaaaaagtgttttagattagggaacaatcattgaaagtaaactatttcct  12434900     --------->MYB46(3)               ------------>CBF   --------->MYB52(1)             <---------YAB1 -------->ANAC58               --------->ICU4<---------YAB1 -------->ANAC46           ----------->RAV1(1)         ------->TEIL                                 < -------->ANAC58        --------->ANAC58    --------->AHL20(2)                            <---------MYB46(3) ->ZmHOX2a(1)           --------->ANAC58   --------->AHL20(2)               -------->P   <---------YAB1 --->TOE2(3)            --------->ANAC46   <---------AHL20(2)       <-----------GT1      <---------TOE2(3)   caacgtaacgactaaaccctagaaacaagcaacatgatgaaacaattaatatagacgaacatatagaatattacgacttaccttgagaactatggttgaa  12435000                                                <----------DOF2                                            ------->GAMYB               --------->ZAT18                                           <---------MYB52(2)           <---------ZAT14        --------->TOE2(3)             --------->ANAC58                  <---------ZAT18        --------->TOE1(3)             --------->RAP2.6(2)           --------->ATHB12              <--     --------->ARR14(2)               --------->ANAC58           --------->YAB1                ------     <---------ARR14(2)--------->ANAC46    <------------MYB.PH3(2) <---------YAB1        <---------ANAC46    --------->GLK1(1)  --------->ANAC58    --------->MYB46(3)  --------->ARR11(3)      <------MYB83 <---------TOE2(3)     --------->ANAC58  ----------->RAV1(1)   <---------ARR11(3)      <---------ANAC46 -----------GT1    --------->CCA1(2)<-----------HVH21  --------->ZAT14  --------->ZAT14<------MYB46(1)   attaacatatccataaccaagagacaagccagtgtttcggtcgcaacaaactttcactgaagaaatatcatgagtgaactcactgaatttggtgtataag  12435100                         ------>ZmHOX2a(2)                        <---------GLK1(1)                        --------->GLK1(1)                        <------ZmHOX2a(2)                       <---------ARR14(2)                                           --------->ANAC58                       <---------ARR14(3)                                           --------->ANAC46                       --------->ARR11(3)                                           --------->ANAC55(2)                       --------->ARR14(3)                                           --------->ANAC55(1)                       <---------AGP1                                               --------->O2                       --------->ARR14(2)                                <---------YAB1 <----------DOF2          <---------ALFIN1   ------>ZmHOX2a(1)                        <---------YAB1<---------O2       --------->ANAC46<---------ARR11(3)                           <-------TEIL    <---------ANAC55(2) ---------GT1      --------->YAB1        ------->TEIL           <---------TOE1(2)   --------->ANAC58 --->ANAC46       <---------ATHB12 <---------AHL20(2)           <---------TOE2(3) <---------ALFIN1---   tcaccctcttcgacactcgaatcaagatctcctatatataatgtatgcttctcaaatttgttctctgaggttcttatagttgaaacacgtctttgttctc  12435200  Previous    Next  AGI:  At1g34140.1    Description:  PAB1 (POLY(A) BINDING PROTEIN 1); RNA binding / translation initiation factor. similar to PAB5 (POLY(A)-BINDING PROTEIN), RNA binding [Arabidopsis thaliana] (TAIR:AT1G71770.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO71896.1); contains InterPro domain RNA recognition, region 1; (InterPro:IPR003954); contains InterPro domain RNA recognition motif, RNP-1; (InterPro:IPR000504); contains InterPro domain Nucleotide-binding, alpha-beta plait; (InterPro:IPR012677) Range:  from: 12433334    to: 12434713    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
	printer-friendly version