Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                               <------MYB83                                                                             <------MYB46(1)                                                                             <---------MYB46(3)                                                                           <--------P                                                                         --------->ALFIN1                                                                        <-------MYC3                                                                        ------->MYC3  --------->GLK1(2)                                                                       <---------ANAC55(1)            <---------ANAC58 <----------CDC5                           --------->ANAC55(2)            <---------ANAC58--------->ZAT18                    ----------->GT1       <---------GLK1(1)          <-------TEIL ---------->DOF2                         <---------MYB46(3)    --------->GLK1(1) ----------->HVH21    --------->WRKY18(1)                     --------->ALFIN1<-------GAMYB <----------ID1       <-------TEIL         ---------->DOF2    <---------AtMYB61   <---------TOE2(3) ------->ANAC46<-----------HVH21<---------------------WRI1    <---------ZAT6<---------AtMYB61   taagcgacaaggttcagtgtcacgttcaagcgcagaggctgagtacaaagccgtagcaaatgcagtggtagaaacgtgttggttaagaaatctgtttttg  12415100                             <------MYB83                             <------MYB46(1)                             <---------MYB46(3)                                       ---------------                            <---------TOE2(2)                                         <---------TOE2(3)                           <---------MYB52(1)                                         <--------------                     --------->MYB46(3)                                               ---------------                    --------->ANAC46                                                  <---------TOE1(3)                    --------->ANAC58                                         <---------WRKY12                    --------->ANAC58                                        --------->WRKY18(1)                  ---------->DOF2                         <-----------GT1  <-----------HVH21                --------->ANAC58                   --------->ZAT14        ----------->GT1                --------->ANAC58                   <---------ZAT18        --------->LBD16           <---------At4g35610                     <---------ZAT14      <---------LBD16         <----           --------->At4g35610               <-----------HVH21  --------->ZAT14      <-----------GT1   gagtaacattgtctgatcactcaagcaacgttggttttttgcaacaatgtcagtgcagtttatctctccactaatccggtcaaatattaacgtactaaac  12415200      <---------WOX13(1)                                      --------->ARR14(2) >AtSPL8                                                      <---------ARR14(2) -AtSPL8                                --------->TOE1(2)    <---------CCA1(2)                   ---- >AtSPL3                                --------->TOE2(2)  --------->YAB1          --------->At4g35610 -----ICU4       <----------DOF2     ----------->RAV1(1)--------->WOX13(1)         <---------At4g35610   atgtcgagattgacattcactttgtccgagagaaggtagcaacatgcgaagttcgagtcattcatatccctgcttctcatcaatatgctgacattttcac  12415300                                                           --------->DEAR3(1)                                                           ------->GAMYB                                                          --------->DEAR3(2)                                                        ------->GAMYB                                                       <---------MYB52(2)                                                       <---------MYB55(2)                                                 --------->WOX13(1)                                               <------NtERF2                              <---------ARR14(2)                                              <-----------TGA1                 <------MYB46(1)                                              <-----------HVH21                <------MYB83--------->CCA1(2)                                             <---------bZIP60(1)          --------->HSFB2a(2)       <                                             --------->bZIP60(1)          <---------HSFB2a(2)       -                                             <---------ANAC58             --------->LBD16 --------->ARR11(3)                                             <---------ANAC58           <---------LBD16   <---------ARR11(3)                        <---------ATHB12     <---------ANAC46    ---------->DOF2<---------ARR11(3) <<             --------->ZAT14                ---------->ID1--------->MYB46(3) <--------P<------ZmHOX2a(1) ------>DOF2 <---------ZAT14       --------->ZAT14     --------->MYB46(3)<---------ANAC46 --------->ARR14(2)   aaagggtcttactacttcactgttcaatcgattcaagtccagtcttggcgtcattcaacgaccgacgaaaagactgcgggaaggtattaggagatatgtt  12415400                                    ------------>CBF                                 ------>ZmHOX2a(2)                                <---------GLK1(1)                                <------ZmHOX2a(2)                                --------->GLK1(1)                               <---------ARR11(3)                               --------->ARR14(2)                               --------->ARR11(3)                                                 <--                               <---------ARR14(3)                                                 <--                              <---------GLK1(1)                                                   ---               ------->TEIL   --------->GLK1(1)                                                   <-- <---------CCA1(1)          <------ZmHOX2a(1)                   <------------CBF         ------>ZmHOX2a(1) ---------ARR11(3)<---------HSFB2a(2)       <---------REM1(1) --------->AHL20(1)     <---------ALFIN1 -------->ARR11(3)--------->HSFB2a(2)  <------------CBF       --------->ARR11(3)<-----------ARR10 --- <<<<<<<RAP2.2<---------CCA1(2)<---------ARR14(2)            <-----------TBP  ---------->DOF2   -----   tagatattatgcgattgtatctagaatataggagatctctcaattgttgtaactgaaatgtgtatatattgaatcgaatgcaaagctactcctcaaggga  12415500                                                          <---------TOE2(3)                                                        <---------TOE1(1)                                                     --------->TOE1(2)                                                    --------->HSFB2a(1)                                                   <---------TOE1(2)             <-----------RAV1(2)                   --------->SPL7        <<<<<<<<<ARR1                           <---------ANAC58        <<<<<<<<<ARR2                           <---------ANAC58    ------------>CBF                           <---------------AtSPL3   <-----------GT1                             <-------TEIL -------ARR11(3)                           ----------->ARR10 -------GLK1(2)<---------At4g35610    --------->ICU4<---------HSFB2a(1) ------>ARR14(2)                    ---------->DOF2<---------TOE2(2)                  ------>ZmHOX2a(1) -------ARR14(2)                 ------->GAMYB--------->GLK1(2)             <-----------HVH21     <-- ------>ARR11(3)      *TSS    ----------->RAV1(1)<---------SPL7        <---------MYB52(1)--------->HSFC1(2) ------>ARR10=============================RAV<---------GLK1(2)     <-----------------AGL1<---------HSFC1(2)   gattttcacaatcttacaggtgatttgttgttcaacagaaaagatgagattcgtacgttcgaggttgtctctcgttatggtcacggtcctaagcttcttg  12415600                                                                                --------->AHL20(2)                                                                               <---------YAB1                                                                             <---------ICU4                                                                             -------->ATHB1                                                                            <---------YAB1                                                                            <---------AHL20(2)                                                                         --------->AHL20(2)                                                                         <---------AHL20(2)                                                 <------MYB83           <---------AHL20(1)            <-------GAMYB                        <------MYB46(1)        <---------AHL20(2)           <---------MYB46(3)                --------->ATHB12       <---------YAB1          <---------ANAC58             --------->LBD16     <---------ANAC58 --------->ICU4          <---------DREB2C(2)         --------->LBD16      <---------ANAC46 --------->AHL20(2)          <---------ANAC58            <---------LBD16 <------MYB83--------->YAB1<---------AHL20(2)       <-----------RAV1(1)           <---------LBD16  <------MYB46(1)--------->YAB1  <----------DOF2             <---------YAB1<---------YAB1 <---------ANAC58 --------->AHL20(1) <---------MYB52(1)     ----------->GT1<------NtERF2 --------->MYB59--------->ICU4   <-----------GT1 -------ORA47(1)       <------ZmHOX2a(1)  <--------P <---------AtMYB61  --------->AHL20(2)         --   gccggttttctggcggtcgaatcgaggagtttattaatgcccgggtatgtttggtttggtttcttgtgtaataataaaattattaattaaccatacccat  12415700                                       --------->MYB59                             --------->TOE2(3)                                       <---------MYB46(3)                       ------->GAMYB                                   <-----------RAV1(1)                         <---------MYB111(2)                              --------->YAB1                          <---------ARR11(3)                             <---------YAB1                           --------->ARR11(3)             <-----------RAV1(1)   <---------ZAT6  >>>>>>>>>>WRKY63   --------->ARR14(2)        --------->YAB1  --------->ANAC46<------MYB46(1)             ----------->ARR10  --------->ATHB12       <-------TEIL     --------->ANAC58<------MYB83     --------->YAB1        --------->MYB46(3)   - ------->ATHB12         --------->ANAC58<---------ANAC46<---------YAB1<---------ARR14(2)           <-   ttgattagattcattatgttgtgactacgaaatgatagtgttgggtctaaatttgactatgagaactgagaagatacttcaacaacctttgatttgtttt  12415800               --------->LBD16   --------->ATHB12 <---------ANAC58                 <---------ANAC58              <---------LBD16  <---------WOX13(1) <---------ANAC46                 <---------ANAC58     <---------TOE2(3)        <---------ANAC58    <---------ANAC58  --------->ANAC58   <-----------RAV1(1)  <---------WOX13(1)   ----------------->AG  <-----------RAV1(1)    --------->ANAC46   <---------MYB46(3) -------->ATHB12     <-----------GT1 --------->MYB52(1)      ----------->GT1   <---------At4g35610 --------YAB1<---------LBD16  <---------ANAC58  <---------ANAC46    --------->ANAC58<----------DOF2   tgtgattgatgttgaaccgggaattaccaattgagtgattaccggttttgttgtgtatcaattgagtaacaagaaacgtttagatgcttttgttggactt  12415900                                                                                      ---------->DOF2                                                                                     XXXXXXXXXXXXXXXX                                                                                     XXXXXXXXXXXXXXXX                                                                                     XXXXXXXXXXXXXXXX                                                                                    <---------------AGL15                                                                                    --------------->AGL15                                                                                   ----------------->AGL2                                                                                   ----------------->AG                                                                                   <-----------------AG                                                                                   <-----------------AGL1                                                                                   ----------------->AGL1                                                                            --------->LBD16              --------->ALFIN1                                             <---------HSFB2a(2)            <---------ANAC58                                               ----------->GT1            <---------ANAC58                                               --------->LBD16            <---------ANAC46                                              <---------LBD16        <---------ANAC46                                                 <---------LBD16        <---------ANAC58          <----------DOF2                      --------->ARR14(2)        <---------bZIP60(2)   <------ZmHOX2a(1)       <------ZmHOX2a(1)<---------ARR14(2)          --        <---------ANAC58   --------->YAB1    <---------ANAC46         <---------GLK1(1)           <--   cattaccatgacttgggtgtgtctacctataaggacctttgaatgtggtttgtttaggagtttttggttttggtatccgggaaataccaaaagaggtatg  12416000  Previous    Next  AGI:  At1g34097.1    Description:  transposable element gene. copia-like retrotransposon family, has a 2.3e-158 P-value blast match to GB:AAA57005 Hopscotch polyprotein (Ty1_Copia-element) (Zea mays) Range:  from: 12412760    to: 12415364    Orientation: Forward Links:  TAIR  MIPS    AGI:  At1g34100.1    Description:  choline kinase, putative, similar to choline kinase (GmCK2p) GI:1438881 from (Glycine max); contains Pfam profile PF01633: Choline/ethanolamine kinase; could not find a suitable start codon; this may be a pseudogene, a transposon insertion is found immediately upstream. Range:  from: 12415522    to: 12417150    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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