Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                         <---------ANAC58                                    <----------DOF2                           <---------DDF1                          --------->ETT(2)                          <---------ETT(2)       <---------ICU4     <<<<<<<<<<bZIP23                                 <----------DOF2      <---------ATHB12    >>>>>>>>>>bZIP19                       ------>ZmHOX2a(1)                  < ---------WOX13(1)        >>>>>>>>>>bZIP23                 <---------ARR14(2)          --------->MYB52(1) ------>ATHB12            <<<<<<<<<<bZIP19        <-----------RAV1(1)   <---------ARR11(3)      ----- ------YAB1              --------->DDF1<---------ANAC58    --------->ARR14(2)      <---------TOE2(3)-   tgattgaaatcaatacctcttgttcatgtcgacatcggctttcttgcagacaatgttggccaatctccttccaatacctttgatagaggtaagggcaaac  12371100                                    --------->ANAC55(1)                                    --------->ANAC46                                    --------->ANAC58                               <---------At4g35610                               --------->At4g35610                       --------->MYB52(2)        <---------ANAC58       <---------ZAT18        <---------ANAC58 <---------ZAT6                                                         -----   <----------DOF2   <---------MYB52(1)                                                         ----- ---------ARR11(3)  --------->TOE2(3)         --------->At4g35610                          --------->YAB1 ---->YAB1          --------->TOE1(3)         <---------At4g35610 -------->P      ----------->GT1 -------->GLK1(2) <---------TOE2(3) --------->ANAC58     ------>ZmHOX2a(1)     --------->AtLEC2 -----   ataatcttttgcttaccatcaacgttagtgttgagcacacgcaaaatgtgctgaaactcctcatttgcaaccagagactacatgcagtaacaaaaatcac  12371200                                         --------->TOE2(3)                                         <---------MYB59                                         --------->TOE1(3)                                   --------->ANAC55(2)                                   <---------ANAC55(2)           <---------ATHB12        --------->ANAC55(1)   <---------At5g28300             --------->ANAC46 ---->ANAC58                  --------->YAB1                                                 -------- ---->ANAC46 --------->TOE2(3)<---------ICU4                                                 -------- ---->ANAC58--------->YAB1   <---------ATHB12  <----------DOF2            <-------TEIL--------->ZAT6   acaattacagccaaacatcaaaaattccctaatcaacacataacctaaactttctgttcgatacttggttctctgattcatgaaattaacacaaacccta  12371300                                              --------->HSFB2a(2)                                              <---------HSFB2a(2)                                              >>>>>>>ZML2                   >>>>>>>>>MYB98                                              <---------HSFC1(1) ---------->DOF2             <-------                                   --------->ANAC58    ------>ZmHOX2a(2)----------->GT1     <-------- ->TOE2(3)                         --------->ANAC58    ================HOX2a_HOX2a      <-----------RAV1(1) ->TOE1(3)           ---------->DOF2          --------->HSFC1(1)<------ZmHOX2a(1)       <---------MYB46(3)   atctttctatgcaatatggatttgaaaggaagaggctaagctactgttctagatcgatcggaatcaggaaagcgaagtaacatatagtagttgttgggga  12371400                                      <---------YAB1                              --------->TOE2(3)                              --------->TOE1(3)                          --------->ARR14(2)                           ---------->DOF2   ------>NtERF2                          <---------ARR14(2)<---------YAB1      <---------ANAC58        --------->DEAR3(1)                   ---------->DOF2   >>>>>>>>>>>>>>>>>LFY       <---------ANAC58--------->At4g35610 --HSFB2a(2)     --------->ANAC58   <-----------GT1         --------->CCA1(2)   <---------GLK1(1) -LBD16          --------->ANAC58<---------ICU4        --------->CCA1(2)        <---------At4g35610<-   agagactaagacgagagaaacgaaagcgtaaaccctaattaccattgtgatttgaagataagagatgcctgagaaaagatggagctctcgccgtcttcaa  12371500                                 *TSS                            --------->ZAT2                            <---------ZAT2                  <---------------AGL15                            --------->At4g35610             --------------->AGL15                            <---------At4g35610            ==========================================                        <-----------HVH21                  <-----------------AGL2                       <---------ANAC58                    <-----------------AG        <---------ZAT14<---------ANAC58                   <---------At4g35610       <---------GLK1(2)        --------->ZAT14<---------ANAC46             <-----------TBP            <-----------GT1 ---------DOF2       ------->GAMYB             <---------RAP2.6(2)       --------->YAB1      --------   gctttctctcttcagtgattcaacagcgtgagctagggtttttttttgttcggcttatatagctcattttggctatcgaaattactgattttctgaaaag  12371600               <------MYB83         <---------MYB52(1)        --------------->AGL15       <-----------------AG       <-----------------AGL3    <-----------GT1                                           <-----------GT1  --------->YAB1                              <---------ARR14(2)        <---------ANAC55(2) <---------YAB1<------MYB46(1)                --------->ARR14(2)   <---------ICU4                   < =======================MADS_MADS      --------->AHL20(2)  <---------GLK1(1)                      <-- -->DOF2<---------------AGL15         <---------ATHB12     --------->GLK1(1)             <------ZmHOX2a(1)   actattatacccttatttggtttaagcccattcttgtccaattaaaccgatacacttagggatatcacattatcacttgaacatggacacaggacatttg  12371700                                                                                                 ----                                                                                                 <---             ----------->GT1                             >>>>>>>>>GATA-1                         ----            ----------->GT1                           <---------WOX13(1)                         ----          ---------->DOF2                           <--------ATHB1                        --------->ALFIN1       <---------HSFB2a(2)                          --------->YAB1                      <---------ANAC58       --------->HSFB2a(2)                          --------->ATHB12          ------>ZmHOX2a(1) <----    --------->GLK1(2)            ---------->DOF2   <---------YAB1         ------->TEIL  <---------ANAC58 -----------GT1                  <---------ICU4    <---------ATHB12       --------->ARR14(2)    <---- -------WOX13(1)--------->AHL20(2)             <---------ATHB12           <---------ARR14(2)   <-----   attaacaatctagaaagataaaatgtatggtctaataaagacgcttcaaatcaatgatagataaaacgatgacatgaatcctcttcgtaagcgtgtttca  12371800                                       --------->YAB1                           <---------AHL20(2)                          <---------AHL20(1)         ---------->DOF2  <---------ARR11(3) ----->ANAC46             --------->AHL20(1)                                          <---------ARR14(2) ------At4g35610          --------->ARR11(3)                               ------>ZmHOX2a(2) ------->GT1             --------->CCA1(2)                               --------->ARR11(3)         - ----->ANAC55(2)        <---------ARR11(3)                               <---------ARR11(3)  <------- -----TOE2(3)           --------->ARR11(3)                         <-------TEIL       --------->ARR14(2) -----TOE1(3)----------->GT1          <---------ATHB12       <---------ANAC55(2)      <---------GLK1(2) ------RAV1(2)      --------->YAB1  --------->WOX13(1)       --------->ANAC55(2)      --------->ARR11(1)   ggtaacaaaacaaaagagtgaatcaagatatatttgttcaatcaaatgagttatactactatcaagtgattcatcgatctttgaactagatttggagcac  12371900                                                                             --------->MYB52(2)                                                 <---------ZAT14  --------->ANAC46                                                 --------->ZAT14 --------->At4g35610      ---------->DOF2                     <---------ZAT14       <---------ALFIN1   --------->ANAC58                       --------->ZAT14      <---------ZAT14   --------->ANAC58                   --------->ANAC46         --------->ZAT18 ---------->HVH21                   <-----------GT1          <-----------HVH21                   <--- --At4g35610        <---------GLK1(2) <-----------GT1   <-----------GT1    <---------MYB52(1)    ----   atatgacgcaaaggagggtttggattcttacatatgttatacactatacagtatagaataacgcgtccactgcaaccgtttgtggtcttcacttcccatc  12372000  Previous    Next  AGI:  At1g34030.1    Description:  40S ribosomal protein S18 (RPS18B). Identical to 40S ribosomal protein S18 (RPS18C) [Arabidopsis Thaliana] (GB:P34788;GB:Q94K22); similar to RPS18C (S18 RIBOSOMAL PROTEIN), structural constituent of ribosome [Arabidopsis thaliana] (TAIR:AT4G09800.1); similar to PFL (POINTED FIRST LEAVES), structural constituent of ribosome [Arabidopsis thaliana] (TAIR:AT1G22780.1); similar to unknown [Populus trichocarpa] (GB:ABK92692.1); contains InterPro domain Ribosomal protein S13-like, H2TH; (InterPro:IPR010979); contains InterPro domain Ribosomal protein S13; (InterPro:IPR001892) Range:  from: 12370045    to: 12371533    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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